Wall clock time and date at job start Tue Mar 31 2020 12:21:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52998 * 109.47227 * 2 1
4 4 N 1.46501 * 109.47488 * 180.02562 * 3 2 1
5 5 C 1.46494 * 119.99787 * 269.99847 * 4 3 2
6 6 C 1.39050 * 119.99660 * 89.99469 * 4 3 2
7 7 C 1.39213 * 119.93401 * 359.73078 * 6 4 3
8 8 C 1.37612 * 120.06418 * 179.72008 * 7 6 4
9 9 C 1.39795 * 119.93222 * 0.57404 * 8 7 6
10 10 C 1.47524 * 120.06518 * 179.67836 * 9 8 7
11 11 O 1.21594 * 119.99323 * 137.35186 * 10 9 8
12 12 N 1.34771 * 120.00191 * 317.35090 * 10 9 8
13 13 C 1.46501 * 119.99955 * 212.78110 * 12 10 9
14 14 C 1.50698 * 109.47361 * 89.99599 * 13 12 10
15 15 H 1.08002 * 119.99850 * 0.02562 * 14 13 12
16 16 C 1.37877 * 120.00002 * 179.97438 * 14 13 12
17 17 N 1.31514 * 119.99943 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 120.00216 * 180.02562 * 16 14 13
19 19 H 1.48505 * 109.46965 * 90.00029 * 18 16 14
20 20 H 1.48496 * 109.47581 * 210.00056 * 18 16 14
21 21 H 1.48503 * 109.47088 * 330.00516 * 18 16 14
22 22 C 1.46494 * 120.00284 * 32.77736 * 12 10 9
23 23 C 1.53003 * 109.47122 * 301.30061 * 22 12 10
24 24 C 1.53000 * 109.47122 * 61.29796 * 22 12 10
25 25 C 1.39794 * 119.86384 * 359.70106 * 9 8 7
26 26 C 1.37614 * 119.92739 * 359.97438 * 25 9 8
27 27 H 1.08992 * 109.47379 * 60.00240 * 1 2 3
28 28 H 1.09006 * 109.46950 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.46810 * 299.99626 * 1 2 3
30 30 H 1.08997 * 109.47244 * 239.99753 * 2 1 3
31 31 H 1.09000 * 109.47075 * 119.99827 * 2 1 3
32 32 H 1.09006 * 109.46726 * 300.00286 * 3 2 1
33 33 H 1.08997 * 109.47211 * 59.99732 * 3 2 1
34 34 H 1.09006 * 109.47124 * 90.00198 * 5 4 3
35 35 H 1.08998 * 109.47177 * 209.99507 * 5 4 3
36 36 H 1.08996 * 109.47073 * 329.99909 * 5 4 3
37 37 H 1.08001 * 119.96784 * 359.97438 * 7 6 4
38 38 H 1.08004 * 120.03203 * 180.27245 * 8 7 6
39 39 H 1.08997 * 109.47131 * 210.00353 * 13 12 10
40 40 H 1.09008 * 109.47095 * 329.99821 * 13 12 10
41 41 H 0.97004 * 120.00282 * 179.97438 * 17 16 14
42 42 H 1.08995 * 109.47631 * 181.30394 * 22 12 10
43 43 H 1.09001 * 109.47035 * 13.40803 * 23 22 12
44 44 H 1.09001 * 109.47001 * 133.40787 * 23 22 12
45 45 H 1.08999 * 109.47313 * 253.40567 * 23 22 12
46 46 H 1.09000 * 109.46957 * 104.03366 * 24 22 12
47 47 H 1.09001 * 109.47516 * 224.03019 * 24 22 12
48 48 H 1.09000 * 109.47111 * 344.02806 * 24 22 12
49 49 H 1.07990 * 120.03762 * 179.97438 * 25 9 8
50 50 H 1.08003 * 119.95982 * 180.02562 * 26 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 -0.0006
5 6 4.2380 1.4424 1.2678
6 6 4.1997 1.4426 -1.2052
7 6 3.5017 1.4370 -2.4096
8 6 4.1864 1.4429 -3.6033
9 6 5.5844 1.4424 -3.6055
10 6 6.3214 1.4416 -4.8835
11 8 7.2963 2.1547 -5.0234
12 7 5.9142 0.6505 -5.8957
13 6 6.8973 0.0761 -6.8176
14 6 7.3573 -1.2597 -6.2930
15 1 6.9570 -1.6427 -5.3659
16 6 8.2884 -1.9933 -6.9972
17 7 8.7754 -1.5272 -8.1264
18 14 8.8580 -3.6494 -6.3474
19 1 7.9777 -4.7199 -6.8809
20 1 10.2566 -3.8969 -6.7810
21 1 8.7926 -3.6482 -4.8639
22 6 4.4885 0.3649 -6.0743
23 6 3.9391 -0.2989 -4.8100
24 6 3.7352 1.6713 -6.3329
25 6 6.2824 1.4423 -2.3943
26 6 5.5919 1.4431 -1.2040
27 1 -0.3634 0.5137 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.8934 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 1.6766 1.9563 -0.8900
33 1 1.6767 1.9563 0.8899
34 1 4.4199 0.4147 1.5822
35 1 5.1904 1.9562 1.1371
36 1 3.6492 1.9561 2.0277
37 1 2.4217 1.4321 -2.4073
38 1 3.6444 1.4430 -4.5374
39 1 6.4414 -0.0562 -7.7987
40 1 7.7521 0.7473 -6.9016
41 1 9.4307 -2.0431 -8.6217
42 1 4.3557 -0.3053 -6.9235
43 1 4.6595 -0.1888 -3.9994
44 1 2.9999 0.1773 -4.5285
45 1 3.7664 -1.3580 -5.0013
46 1 3.4873 1.7442 -7.3919
47 1 2.8184 1.6849 -5.7435
48 1 4.3630 2.5154 -6.0476
49 1 7.3623 1.4415 -2.3928
50 1 6.1307 1.4434 -0.2679
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000608814945.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:21:42
Heat of formation + Delta-G solvation = 73.445412 kcal
Electronic energy + Delta-G solvation = -27951.033221 eV
Core-core repulsion = 24367.705517 eV
Total energy + Delta-G solvation = -3583.327704 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.83443 -38.83821 -36.71276 -36.03324 -33.78024 -33.05220 -31.63262 -30.49304
-29.78628 -27.76234 -27.08844 -26.68552 -25.17926 -23.20347 -22.56470 -22.02850
-21.34827 -20.72619 -18.31277 -17.54647 -16.46136 -16.14388 -15.97906 -15.60479
-15.10670 -14.91610 -14.78722 -14.59915 -14.26746 -13.80787 -13.72993 -13.38955
-13.25947 -13.16496 -12.90839 -12.41640 -12.31018 -12.22578 -12.13851 -12.02475
-11.84089 -11.59201 -11.55709 -11.49679 -11.16396 -11.00972 -10.90407 -10.81714
-10.64447 -10.50143 -10.10894 -10.02387 -9.58319 -9.38195 -8.95306 -8.41643
-8.28652 -7.49495 -7.10575 -6.01433 -4.07434 1.55013 1.75620 2.99932
3.30978 3.36686 3.38733 3.44270 3.99066 4.22386 4.46295 4.57299
4.69177 4.80629 5.00211 5.03078 5.09819 5.11551 5.17015 5.23794
5.25482 5.32071 5.34131 5.37175 5.46068 5.51202 5.56712 5.69073
5.71540 5.73160 5.80736 5.87088 5.90356 5.97110 5.99843 6.01613
6.21413 6.30935 6.38453 6.46106 6.53865 6.67657 6.85992 6.95399
7.20750 7.22615 7.50407 7.52904 7.70804 7.98433 8.27692 8.54967
8.91586 9.11181 9.58317 11.05617
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.014573 B = 0.003566 C = 0.003480
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1920.960105 B = 7849.015504 C = 8044.904078
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.146 4.146
3 C 0.123 3.877
4 N -0.631 5.631
5 C 0.093 3.907
6 C 0.237 3.763
7 C -0.239 4.239
8 C -0.039 4.039
9 C -0.206 4.206
10 C 0.577 3.423
11 O -0.539 6.539
12 N -0.612 5.612
13 C 0.249 3.751
14 C -0.530 4.530
15 H 0.059 0.941
16 C 0.061 3.939
17 N -0.893 5.893
18 Si 0.896 3.104
19 H -0.280 1.280
20 H -0.285 1.285
21 H -0.274 1.274
22 C 0.139 3.861
23 C -0.200 4.200
24 C -0.178 4.178
25 C -0.012 4.012
26 C -0.226 4.226
27 H 0.056 0.944
28 H 0.056 0.944
29 H 0.053 0.947
30 H 0.069 0.931
31 H 0.061 0.939
32 H 0.077 0.923
33 H 0.070 0.930
34 H 0.046 0.954
35 H 0.070 0.930
36 H 0.063 0.937
37 H 0.121 0.879
38 H 0.172 0.828
39 H 0.030 0.970
40 H 0.044 0.956
41 H 0.263 0.737
42 H 0.094 0.906
43 H 0.101 0.899
44 H 0.067 0.933
45 H 0.054 0.946
46 H 0.064 0.936
47 H 0.067 0.933
48 H 0.065 0.935
49 H 0.125 0.875
50 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.662 5.201 16.208 24.529
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.185 4.185
3 C 0.000 4.000
4 N -0.341 5.341
5 C -0.051 4.051
6 C 0.135 3.865
7 C -0.261 4.261
8 C -0.057 4.057
9 C -0.212 4.212
10 C 0.366 3.634
11 O -0.416 6.416
12 N -0.345 5.345
13 C 0.130 3.870
14 C -0.569 4.569
15 H 0.077 0.923
16 C -0.141 4.141
17 N -0.532 5.532
18 Si 0.724 3.276
19 H -0.206 1.206
20 H -0.211 1.211
21 H -0.199 1.199
22 C 0.034 3.966
23 C -0.257 4.257
24 C -0.236 4.236
25 C -0.032 4.032
26 C -0.248 4.248
27 H 0.075 0.925
28 H 0.075 0.925
29 H 0.072 0.928
30 H 0.087 0.913
31 H 0.080 0.920
32 H 0.095 0.905
33 H 0.088 0.912
34 H 0.065 0.935
35 H 0.089 0.911
36 H 0.081 0.919
37 H 0.139 0.861
38 H 0.188 0.812
39 H 0.048 0.952
40 H 0.062 0.938
41 H 0.073 0.927
42 H 0.112 0.888
43 H 0.119 0.881
44 H 0.086 0.914
45 H 0.073 0.927
46 H 0.083 0.917
47 H 0.085 0.915
48 H 0.084 0.916
49 H 0.143 0.857
50 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -17.067 5.541 16.128 24.126
hybrid contribution 0.374 -1.283 0.419 1.401
sum -16.693 4.257 16.547 23.887
Atomic orbital electron populations
1.21706 0.95339 1.01969 1.01766 1.21996 0.95832 0.97753 1.02889
1.21497 0.79462 0.96482 1.02546 1.46311 1.04614 1.79887 1.03279
1.21630 0.97345 1.01097 0.84990 1.17897 0.91126 0.91950 0.85478
1.20430 0.99207 1.15701 0.90804 1.22701 0.94002 0.88727 1.00265
1.19984 0.93856 1.12838 0.94477 1.17972 0.83399 0.78721 0.83262
1.90687 1.29894 1.38236 1.82825 1.47965 1.06432 1.49397 1.30738
1.19289 0.87150 0.93085 0.87462 1.21560 1.23922 1.03378 1.08078
0.92293 1.24945 0.96002 0.98231 0.94907 1.69943 1.30070 1.38297
1.14931 0.86527 0.77978 0.83850 0.79263 1.20630 1.21116 1.19888
1.20954 0.81564 0.95459 0.98650 1.23722 1.01434 1.00726 0.99771
1.22716 1.00002 0.98592 1.02262 1.20868 0.99793 0.92093 0.90439
1.20446 0.91838 1.14332 0.98221 0.92499 0.92497 0.92830 0.91253
0.92008 0.90504 0.91164 0.93545 0.91131 0.91865 0.86119 0.81207
0.95153 0.93833 0.92732 0.88789 0.88064 0.91449 0.92705 0.91669
0.91467 0.91641 0.85699 0.86138
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16
2 C -0.15 -1.12 6.26 -26.73 -0.17 -1.29 16
3 C 0.12 0.98 5.18 -4.04 -0.02 0.96 16
4 N -0.63 -6.39 2.99 -179.63 -0.54 -6.92 16
5 C 0.09 0.75 10.22 59.84 0.61 1.36 16
6 C 0.24 3.08 6.55 -83.86 -0.55 2.53 16
7 C -0.24 -3.07 8.91 -39.45 -0.35 -3.42 16
8 C -0.04 -0.58 4.88 -39.23 -0.19 -0.77 16
9 C -0.21 -3.80 4.28 -104.95 -0.45 -4.25 16
10 C 0.58 13.04 5.83 -12.48 -0.07 12.97 16
11 O -0.54 -14.17 16.80 5.28 0.09 -14.08 16
12 N -0.61 -13.58 2.38 -168.70 -0.40 -13.98 16
13 C 0.25 6.66 5.32 -5.19 -0.03 6.63 16
14 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16
15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16
16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
17 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16
18 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16
19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
21 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16
22 C 0.14 2.38 3.27 -67.93 -0.22 2.15 16
23 C -0.20 -3.03 7.72 37.16 0.29 -2.75 16
24 C -0.18 -2.44 8.37 37.16 0.31 -2.13 16
25 C -0.01 -0.21 9.65 -39.23 -0.38 -0.59 16
26 C -0.23 -3.23 9.18 -39.44 -0.36 -3.59 16
27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16
30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
32 H 0.08 0.60 6.18 -51.93 -0.32 0.28 16
33 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16
34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16
35 H 0.07 0.57 6.17 -51.93 -0.32 0.25 16
36 H 0.06 0.39 7.89 -51.93 -0.41 -0.02 16
37 H 0.12 1.26 6.12 -52.49 -0.32 0.94 16
38 H 0.17 2.29 1.06 -53.86 -0.06 2.24 16
39 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16
40 H 0.04 1.31 7.37 -51.92 -0.38 0.93 16
41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
42 H 0.09 1.63 7.80 -51.93 -0.41 1.23 16
43 H 0.10 1.77 4.01 -61.30 -0.25 1.52 16
44 H 0.07 0.80 5.23 -51.93 -0.27 0.53 16
45 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16
46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
47 H 0.07 0.71 6.17 -51.93 -0.32 0.39 16
48 H 0.06 1.02 6.82 -51.93 -0.35 0.66 16
49 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16
50 H 0.12 1.46 6.11 -52.48 -0.32 1.14 16
LS Contribution 382.75 15.07 5.77 5.77
Total: -1.00 -33.53 382.75 -8.90 -42.43
By element:
Atomic # 1 Polarization: 10.27 SS G_CDS: -7.90 Total: 2.37 kcal
Atomic # 6 Polarization: -4.86 SS G_CDS: -1.64 Total: -6.50 kcal
Atomic # 7 Polarization: -46.67 SS G_CDS: -0.20 Total: -46.87 kcal
Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.08 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -33.53 -8.90 -42.43 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000608814945.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.874 kcal
(2) G-P(sol) polarization free energy of solvation -33.526 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.348 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.445 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds