Wall clock time and date at job start Tue Mar 31 2020 12:21:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52998 * 109.47227 * 2 1
4 4 N 1.46501 * 109.47488 * 180.02562 * 3 2 1
5 5 C 1.46494 * 119.99787 * 269.99847 * 4 3 2
6 6 C 1.39050 * 119.99660 * 89.99469 * 4 3 2
7 7 C 1.39213 * 119.93401 * 359.73078 * 6 4 3
8 8 C 1.37612 * 120.06418 * 179.72008 * 7 6 4
9 9 C 1.39795 * 119.93222 * 0.57404 * 8 7 6
10 10 C 1.47524 * 120.06518 * 179.67836 * 9 8 7
11 11 O 1.21594 * 119.99323 * 137.35186 * 10 9 8
12 12 N 1.34771 * 120.00191 * 317.35090 * 10 9 8
13 13 C 1.46501 * 119.99955 * 212.78110 * 12 10 9
14 14 C 1.50698 * 109.47361 * 89.99599 * 13 12 10
15 15 H 1.08002 * 119.99850 * 0.02562 * 14 13 12
16 16 C 1.37877 * 120.00002 * 179.97438 * 14 13 12
17 17 N 1.31514 * 119.99943 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 120.00216 * 180.02562 * 16 14 13
19 19 H 1.48505 * 109.46965 * 90.00029 * 18 16 14
20 20 H 1.48496 * 109.47581 * 210.00056 * 18 16 14
21 21 H 1.48503 * 109.47088 * 330.00516 * 18 16 14
22 22 C 1.46494 * 120.00284 * 32.77736 * 12 10 9
23 23 C 1.53003 * 109.47122 * 301.30061 * 22 12 10
24 24 C 1.53000 * 109.47122 * 61.29796 * 22 12 10
25 25 C 1.39794 * 119.86384 * 359.70106 * 9 8 7
26 26 C 1.37614 * 119.92739 * 359.97438 * 25 9 8
27 27 H 1.08992 * 109.47379 * 60.00240 * 1 2 3
28 28 H 1.09006 * 109.46950 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.46810 * 299.99626 * 1 2 3
30 30 H 1.08997 * 109.47244 * 239.99753 * 2 1 3
31 31 H 1.09000 * 109.47075 * 119.99827 * 2 1 3
32 32 H 1.09006 * 109.46726 * 300.00286 * 3 2 1
33 33 H 1.08997 * 109.47211 * 59.99732 * 3 2 1
34 34 H 1.09006 * 109.47124 * 90.00198 * 5 4 3
35 35 H 1.08998 * 109.47177 * 209.99507 * 5 4 3
36 36 H 1.08996 * 109.47073 * 329.99909 * 5 4 3
37 37 H 1.08001 * 119.96784 * 359.97438 * 7 6 4
38 38 H 1.08004 * 120.03203 * 180.27245 * 8 7 6
39 39 H 1.08997 * 109.47131 * 210.00353 * 13 12 10
40 40 H 1.09008 * 109.47095 * 329.99821 * 13 12 10
41 41 H 0.97004 * 120.00282 * 179.97438 * 17 16 14
42 42 H 1.08995 * 109.47631 * 181.30394 * 22 12 10
43 43 H 1.09001 * 109.47035 * 13.40803 * 23 22 12
44 44 H 1.09001 * 109.47001 * 133.40787 * 23 22 12
45 45 H 1.08999 * 109.47313 * 253.40567 * 23 22 12
46 46 H 1.09000 * 109.46957 * 104.03366 * 24 22 12
47 47 H 1.09001 * 109.47516 * 224.03019 * 24 22 12
48 48 H 1.09000 * 109.47111 * 344.02806 * 24 22 12
49 49 H 1.07990 * 120.03762 * 179.97438 * 25 9 8
50 50 H 1.08003 * 119.95982 * 180.02562 * 26 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 -0.0006
5 6 4.2380 1.4424 1.2678
6 6 4.1997 1.4426 -1.2052
7 6 3.5017 1.4370 -2.4096
8 6 4.1864 1.4429 -3.6033
9 6 5.5844 1.4424 -3.6055
10 6 6.3214 1.4416 -4.8835
11 8 7.2963 2.1547 -5.0234
12 7 5.9142 0.6505 -5.8957
13 6 6.8973 0.0761 -6.8176
14 6 7.3573 -1.2597 -6.2930
15 1 6.9570 -1.6427 -5.3659
16 6 8.2884 -1.9933 -6.9972
17 7 8.7754 -1.5272 -8.1264
18 14 8.8580 -3.6494 -6.3474
19 1 7.9777 -4.7199 -6.8809
20 1 10.2566 -3.8969 -6.7810
21 1 8.7926 -3.6482 -4.8639
22 6 4.4885 0.3649 -6.0743
23 6 3.9391 -0.2989 -4.8100
24 6 3.7352 1.6713 -6.3329
25 6 6.2824 1.4423 -2.3943
26 6 5.5919 1.4431 -1.2040
27 1 -0.3634 0.5137 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.8934 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 1.6766 1.9563 -0.8900
33 1 1.6767 1.9563 0.8899
34 1 4.4199 0.4147 1.5822
35 1 5.1904 1.9562 1.1371
36 1 3.6492 1.9561 2.0277
37 1 2.4217 1.4321 -2.4073
38 1 3.6444 1.4430 -4.5374
39 1 6.4414 -0.0562 -7.7987
40 1 7.7521 0.7473 -6.9016
41 1 9.4307 -2.0431 -8.6217
42 1 4.3557 -0.3053 -6.9235
43 1 4.6595 -0.1888 -3.9994
44 1 2.9999 0.1773 -4.5285
45 1 3.7664 -1.3580 -5.0013
46 1 3.4873 1.7442 -7.3919
47 1 2.8184 1.6849 -5.7435
48 1 4.3630 2.5154 -6.0476
49 1 7.3623 1.4415 -2.3928
50 1 6.1307 1.4434 -0.2679
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000608814945.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:21:41
Heat of formation + Delta-G solvation = 53.983027 kcal
Electronic energy + Delta-G solvation = -27951.877174 eV
Core-core repulsion = 24367.705517 eV
Total energy + Delta-G solvation = -3584.171657 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.19055 -40.01293 -38.16425 -37.28380 -35.33578 -34.28097 -33.28141 -31.70752
-30.95350 -29.14081 -28.36758 -27.84158 -26.32460 -24.79505 -23.98498 -22.96128
-22.65510 -21.68299 -19.71450 -18.68516 -18.59152 -17.51758 -17.38157 -16.73277
-16.49551 -16.25916 -16.00453 -15.65671 -15.57307 -15.07919 -14.84319 -14.62406
-14.59972 -14.13473 -13.95154 -13.86687 -13.60508 -13.42560 -13.32620 -13.17894
-12.96834 -12.84714 -12.76046 -12.68006 -12.50689 -12.44422 -12.16499 -12.13264
-12.03308 -11.75299 -11.67134 -11.51894 -11.17348 -10.74690 -10.65352 -10.46705
-9.39615 -9.31794 -8.23901 -8.11972 -6.39334 0.30012 0.61799 1.35251
1.38179 1.48756 1.78642 2.20669 2.32056 2.46029 2.96453 3.05659
3.78327 3.83813 3.90422 3.96527 4.09125 4.15682 4.17845 4.28218
4.32624 4.45478 4.52959 4.53641 4.64555 4.69764 4.71585 4.74235
4.78031 4.82077 4.88329 4.93749 5.01206 5.02160 5.03920 5.12531
5.18167 5.21148 5.27181 5.28776 5.32157 5.39213 5.49199 5.51791
5.59959 5.67723 5.82110 5.94960 6.08108 6.38619 6.55150 6.70110
6.83644 7.23632 7.39977 8.83870
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.014573 B = 0.003566 C = 0.003480
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1920.960105 B = 7849.015504 C = 8044.904078
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.141 4.141
3 C 0.117 3.883
4 N -0.625 5.625
5 C 0.084 3.916
6 C 0.249 3.751
7 C -0.233 4.233
8 C -0.027 4.027
9 C -0.240 4.240
10 C 0.570 3.430
11 O -0.598 6.598
12 N -0.618 5.618
13 C 0.265 3.735
14 C -0.545 4.545
15 H 0.055 0.945
16 C 0.008 3.992
17 N -0.928 5.928
18 Si 0.969 3.031
19 H -0.262 1.262
20 H -0.280 1.280
21 H -0.272 1.272
22 C 0.127 3.873
23 C -0.194 4.194
24 C -0.171 4.171
25 C -0.031 4.031
26 C -0.229 4.229
27 H 0.062 0.938
28 H 0.054 0.946
29 H 0.063 0.937
30 H 0.052 0.948
31 H 0.057 0.943
32 H 0.084 0.916
33 H 0.093 0.907
34 H 0.050 0.950
35 H 0.067 0.933
36 H 0.089 0.911
37 H 0.157 0.843
38 H 0.185 0.815
39 H 0.020 0.980
40 H -0.007 1.007
41 H 0.268 0.732
42 H 0.086 0.914
43 H 0.081 0.919
44 H 0.111 0.889
45 H 0.054 0.946
46 H 0.076 0.924
47 H 0.112 0.888
48 H 0.043 0.957
49 H 0.100 0.900
50 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.539 4.316 18.957 29.016
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.180 4.180
3 C -0.005 4.005
4 N -0.332 5.332
5 C -0.059 4.059
6 C 0.143 3.857
7 C -0.255 4.255
8 C -0.045 4.045
9 C -0.245 4.245
10 C 0.363 3.637
11 O -0.480 6.480
12 N -0.350 5.350
13 C 0.144 3.856
14 C -0.584 4.584
15 H 0.074 0.926
16 C -0.191 4.191
17 N -0.568 5.568
18 Si 0.793 3.207
19 H -0.187 1.187
20 H -0.205 1.205
21 H -0.197 1.197
22 C 0.023 3.977
23 C -0.250 4.250
24 C -0.229 4.229
25 C -0.051 4.051
26 C -0.252 4.252
27 H 0.081 0.919
28 H 0.073 0.927
29 H 0.082 0.918
30 H 0.071 0.929
31 H 0.076 0.924
32 H 0.102 0.898
33 H 0.111 0.889
34 H 0.068 0.932
35 H 0.086 0.914
36 H 0.108 0.892
37 H 0.174 0.826
38 H 0.201 0.799
39 H 0.038 0.962
40 H 0.011 0.989
41 H 0.077 0.923
42 H 0.105 0.895
43 H 0.099 0.901
44 H 0.129 0.871
45 H 0.073 0.927
46 H 0.095 0.905
47 H 0.130 0.870
48 H 0.062 0.938
49 H 0.119 0.881
50 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -21.023 4.646 18.919 28.661
hybrid contribution 1.505 -0.964 -0.315 1.815
sum -19.518 3.682 18.604 27.214
Atomic orbital electron populations
1.21684 0.94012 1.02165 1.02635 1.21930 0.96921 0.97238 1.01903
1.21752 0.77735 0.96934 1.04098 1.46621 1.05826 1.77928 1.02875
1.21834 0.97686 1.01739 0.84601 1.18032 0.90727 0.89946 0.86977
1.20732 1.00755 1.14311 0.89704 1.22747 0.92135 0.87836 1.01762
1.19657 0.95435 1.17387 0.92028 1.18752 0.82944 0.77504 0.84532
1.90627 1.32763 1.40843 1.83785 1.47963 1.07988 1.49018 1.30030
1.18758 0.86809 0.91859 0.88191 1.21762 1.24555 1.04000 1.08049
0.92634 1.25895 0.95817 1.02371 0.95019 1.70072 1.30536 1.40004
1.16145 0.85393 0.77786 0.78987 0.78528 1.18716 1.20523 1.19673
1.21338 0.78945 0.97614 0.99757 1.23660 1.02559 1.00993 0.97765
1.22659 1.00755 0.95450 1.03995 1.20816 0.98975 0.93681 0.91618
1.20543 0.92865 1.14195 0.97555 0.91866 0.92706 0.91754 0.92908
0.92406 0.89777 0.88867 0.93153 0.91398 0.89245 0.82578 0.79932
0.96210 0.98851 0.92341 0.89535 0.90086 0.87109 0.92675 0.90475
0.86978 0.93783 0.88147 0.84369
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16
2 C -0.14 -1.61 6.26 30.59 0.19 -1.42 16
3 C 0.12 1.29 5.18 86.38 0.45 1.73 16
4 N -0.62 -10.19 2.99 -722.22 -2.16 -12.35 16
5 C 0.08 1.05 10.22 127.77 1.31 2.36 16
6 C 0.25 5.74 6.55 38.47 0.25 5.99 16
7 C -0.23 -5.14 8.91 22.36 0.20 -4.95 16
8 C -0.03 -0.75 4.88 22.50 0.11 -0.65 16
9 C -0.24 -9.13 4.28 -20.08 -0.09 -9.22 16
10 C 0.57 27.65 5.83 86.69 0.51 28.15 16
11 O -0.60 -34.53 16.80 -4.01 -0.07 -34.60 16
12 N -0.62 -29.06 2.38 -805.90 -1.92 -30.98 16
13 C 0.26 15.24 5.32 85.63 0.46 15.70 16
14 C -0.55 -32.47 9.39 25.60 0.24 -32.23 16
15 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16
16 C 0.01 0.47 5.46 84.65 0.46 0.94 16
17 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16
18 Si 0.97 45.73 29.54 68.60 2.03 47.75 16
19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16
20 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16
21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16
22 C 0.13 4.34 3.27 44.99 0.15 4.49 16
23 C -0.19 -5.53 7.72 71.98 0.56 -4.98 16
24 C -0.17 -4.45 8.37 71.98 0.60 -3.85 16
25 C -0.03 -1.12 9.65 22.50 0.22 -0.91 16
26 C -0.23 -6.36 9.18 22.36 0.21 -6.15 16
27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16
28 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16
29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16
30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16
31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
32 H 0.08 0.85 6.18 -2.38 -0.01 0.84 16
33 H 0.09 0.68 7.89 -2.39 -0.02 0.66 16
34 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16
35 H 0.07 0.91 6.17 -2.39 -0.01 0.90 16
36 H 0.09 0.69 7.89 -2.39 -0.02 0.67 16
37 H 0.16 2.36 6.12 -2.91 -0.02 2.34 16
38 H 0.18 4.42 1.06 -4.20 0.00 4.42 16
39 H 0.02 1.15 7.93 -2.39 -0.02 1.13 16
40 H -0.01 -0.44 7.37 -2.38 -0.02 -0.46 16
41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16
42 H 0.09 3.05 7.80 -2.39 -0.02 3.03 16
43 H 0.08 2.78 4.01 -11.19 -0.04 2.73 16
44 H 0.11 2.16 5.23 -2.39 -0.01 2.15 16
45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
46 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
47 H 0.11 1.89 6.17 -2.39 -0.01 1.87 16
48 H 0.04 1.36 6.82 -2.39 -0.02 1.35 16
49 H 0.10 3.97 8.06 -2.92 -0.02 3.95 16
50 H 0.14 3.21 6.11 -2.91 -0.02 3.19 16
Total: -1.00 -80.06 382.75 5.59 -74.47
By element:
Atomic # 1 Polarization: 17.53 SS G_CDS: 0.90 Total: 18.42 kcal
Atomic # 6 Polarization: -12.00 SS G_CDS: 6.52 Total: -5.47 kcal
Atomic # 7 Polarization: -96.78 SS G_CDS: -3.79 Total: -100.57 kcal
Atomic # 8 Polarization: -34.53 SS G_CDS: -0.07 Total: -34.60 kcal
Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal
Total: -80.06 5.59 -74.47 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000608814945.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.450 kcal
(2) G-P(sol) polarization free energy of solvation -80.058 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.392 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.467 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds