Wall clock time and date at job start Tue Mar 31 2020 13:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46961 * 2 1 4 4 N 1.46902 * 109.46720 * 240.00608 * 2 1 3 5 5 C 1.46899 * 111.00336 * 85.00103 * 4 2 1 6 6 C 1.52996 * 109.47265 * 179.97438 * 5 4 2 7 7 N 1.46902 * 109.47307 * 185.10354 * 6 5 4 8 8 C 1.47900 * 111.00240 * 184.52814 * 7 6 5 9 9 C 1.53990 * 107.06071 * 145.84479 * 8 7 6 10 10 C 1.54599 * 105.13927 * 358.77033 * 9 8 7 11 11 H 1.09001 * 110.72209 * 96.57922 * 10 9 8 12 12 C 1.53001 * 110.72403 * 219.68518 * 10 9 8 13 13 C 1.48732 * 111.04259 * 302.10208 * 7 6 5 14 14 C 1.50697 * 109.47142 * 120.00548 * 2 1 3 15 15 C 1.38293 * 119.93183 * 79.72973 * 14 2 1 16 16 C 1.38105 * 120.07073 * 179.72710 * 15 14 2 17 17 C 1.38877 * 119.92434 * 0.54125 * 16 15 14 18 18 O 1.35757 * 120.06811 * 179.75213 * 17 16 15 19 19 C 1.34829 * 117.00122 * 185.58852 * 18 17 16 20 20 H 1.08000 * 119.99819 * 354.93749 * 19 18 17 21 21 C 1.38650 * 119.99781 * 174.92952 * 19 18 17 22 22 N 1.31555 * 120.00266 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46913 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47519 * 120.00402 * 23 21 19 26 26 H 1.48503 * 109.47050 * 240.00856 * 23 21 19 27 27 C 1.38878 * 119.86714 * 359.72854 * 17 16 15 28 28 C 1.38101 * 119.92926 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.47253 * 299.99859 * 1 2 3 30 30 H 1.09006 * 109.47569 * 59.99864 * 1 2 3 31 31 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 32 32 H 1.00896 * 111.00091 * 321.04008 * 4 2 1 33 33 H 1.09007 * 109.46908 * 59.99538 * 5 4 2 34 34 H 1.08999 * 109.47206 * 299.99871 * 5 4 2 35 35 H 1.09002 * 109.46834 * 65.10310 * 6 5 4 36 36 H 1.08994 * 109.47631 * 305.10368 * 6 5 4 37 37 H 1.08999 * 109.91756 * 26.48568 * 8 7 6 38 38 H 1.09003 * 109.91360 * 265.19448 * 8 7 6 39 39 H 1.09004 * 110.30545 * 239.85487 * 9 8 7 40 40 H 1.08997 * 110.39608 * 117.73079 * 9 8 7 41 41 H 1.09000 * 109.46861 * 56.15019 * 12 10 9 42 42 H 1.08996 * 109.46891 * 296.14962 * 12 10 9 43 43 H 1.08999 * 109.47088 * 176.15003 * 12 10 9 44 44 H 1.09000 * 110.83751 * 81.95948 * 13 7 6 45 45 H 1.09003 * 110.58439 * 318.77192 * 13 7 6 46 46 H 1.08000 * 119.97004 * 359.97438 * 15 14 2 47 47 H 1.07996 * 120.03502 * 180.27152 * 16 15 14 48 48 H 0.97005 * 120.00158 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.03831 * 180.02562 * 27 17 16 50 50 H 1.07998 * 119.96479 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2227 -2.3469 6 6 2.5960 -0.5326 -3.5743 7 7 2.7749 0.4077 -4.6886 8 6 3.1677 -0.3034 -5.9245 9 6 2.5259 0.4513 -7.1034 10 6 1.7263 1.6055 -6.4566 11 1 2.3076 2.5276 -6.4616 12 6 0.3897 1.8065 -7.1735 13 6 1.5015 1.1071 -5.0069 14 6 2.0323 -0.7105 1.2304 15 6 2.0609 -2.0927 1.2657 16 6 2.5259 -2.7467 2.3896 17 6 2.9547 -2.0149 3.4894 18 8 3.4077 -2.6549 4.5976 19 6 3.6988 -1.8909 5.6697 20 1 3.6466 -0.8147 5.5959 21 6 4.0651 -2.4869 6.8668 22 7 4.1290 -3.7978 6.9564 23 14 4.4678 -1.4284 8.3523 24 1 4.3211 0.0051 7.9931 25 1 3.5375 -1.7579 9.4618 26 1 5.8646 -1.6907 8.7830 27 6 2.9195 -0.6271 3.4529 28 6 2.4581 0.0211 2.3241 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.4495 -1.4978 -1.4101 33 1 2.7588 1.0464 -2.1182 34 1 1.0870 0.6165 -2.5525 35 1 1.8743 -1.2988 -3.8577 36 1 3.5509 -1.0024 -3.3385 37 1 2.7998 -1.3290 -5.8956 38 1 4.2529 -0.2982 -6.0269 39 1 1.8574 -0.2088 -7.6562 40 1 3.2961 0.8486 -7.7645 41 1 -0.1697 0.8710 -7.1681 42 1 0.5724 2.1147 -8.2029 43 1 -0.1857 2.5769 -6.6602 44 1 1.3414 1.9476 -4.3316 45 1 0.6621 0.4129 -4.9646 46 1 1.7229 -2.6613 0.4120 47 1 2.5521 -3.8261 2.4149 48 1 4.3856 -4.2148 7.7939 49 1 3.2526 -0.0552 4.3064 50 1 2.4301 1.1003 2.2953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775336637.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:23 Heat of formation + Delta-G solvation = -5.843080 kcal Electronic energy + Delta-G solvation = -25795.798558 eV Core-core repulsion = 22209.032646 eV Total energy + Delta-G solvation = -3586.765911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.58622 -39.09928 -37.56712 -35.78766 -33.92036 -32.25593 -31.31694 -30.14837 -29.68810 -27.93090 -27.27023 -25.74822 -25.34051 -22.75228 -22.40817 -21.63582 -21.01138 -20.44734 -19.94645 -17.87740 -16.94707 -16.60382 -15.88667 -15.83500 -15.26099 -14.73982 -14.45813 -14.43716 -14.16014 -13.91331 -13.62125 -13.58038 -13.41319 -13.29069 -12.98955 -12.85421 -12.66663 -12.51562 -12.41395 -12.09895 -11.94594 -11.64618 -11.54949 -11.34531 -11.24796 -11.18911 -11.12423 -11.07812 -10.88039 -10.65431 -10.54317 -10.36681 -10.36369 -9.26861 -8.78512 -8.71914 -8.34585 -8.08745 -7.08631 -6.40448 -3.99038 2.30069 2.39511 3.14851 3.16323 3.21849 3.55493 4.00441 4.19523 4.22311 4.37741 4.55739 4.66912 4.84885 4.90541 4.94914 5.05241 5.08194 5.10813 5.17558 5.26406 5.31524 5.32706 5.35263 5.36542 5.37965 5.44339 5.49289 5.62383 5.67860 5.70798 5.73179 5.76811 5.81901 5.83784 5.92043 5.96436 6.01022 6.16918 6.29252 6.48629 6.57615 6.74840 6.78023 6.91783 7.06454 7.13834 7.36239 7.41626 7.48847 7.51860 7.90346 8.05098 9.05606 9.77273 10.77920 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.001880 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.262704 B =14891.195989 C =15079.157586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.143 3.857 3 H 0.076 0.924 4 N -0.678 5.678 5 C 0.063 3.937 6 C 0.049 3.951 7 N -0.517 5.517 8 C 0.037 3.963 9 C -0.128 4.128 10 C -0.098 4.098 11 H 0.083 0.917 12 C -0.144 4.144 13 C 0.038 3.962 14 C -0.166 4.166 15 C -0.053 4.053 16 C -0.194 4.194 17 C 0.153 3.847 18 O -0.181 6.181 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.233 4.233 28 C -0.068 4.068 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.337 0.663 33 H 0.079 0.921 34 H 0.025 0.975 35 H 0.031 0.969 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.108 0.892 47 H 0.114 0.886 48 H 0.268 0.732 49 H 0.125 0.875 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 9.761 -25.107 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.034 3.966 3 H 0.094 0.906 4 N -0.309 5.309 5 C -0.067 4.067 6 C -0.079 4.079 7 N -0.241 5.241 8 C -0.091 4.091 9 C -0.166 4.166 10 C -0.117 4.117 11 H 0.101 0.899 12 C -0.201 4.201 13 C -0.090 4.090 14 C -0.167 4.167 15 C -0.072 4.072 16 C -0.214 4.214 17 C 0.100 3.900 18 O -0.085 6.085 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.252 4.252 28 C -0.087 4.087 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.126 0.874 47 H 0.133 0.867 48 H 0.078 0.922 49 H 0.143 0.857 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.894 9.786 -24.542 27.071 hybrid contribution -1.335 -0.002 0.379 1.388 sum -7.229 9.784 -24.163 27.053 Atomic orbital electron populations 1.22494 0.97332 1.02105 1.01509 1.20167 0.91714 0.96739 0.87997 0.90612 1.60519 1.57830 1.09395 1.03167 1.21933 0.98985 0.95956 0.89777 1.22264 1.01627 0.93409 0.90614 1.64731 1.28258 1.26563 1.04567 1.22845 1.01146 0.96066 0.89084 1.22491 0.99448 0.97160 0.97466 1.22083 0.96506 0.98852 0.94276 0.89897 1.21779 0.96321 1.01755 1.00267 1.23354 0.91111 0.98421 0.96116 1.19059 1.09132 0.93537 0.94989 1.20297 0.97715 0.93392 0.95790 1.20203 1.08326 0.99285 0.93540 1.19390 0.91292 0.90925 0.88433 1.83980 1.71009 1.35288 1.18174 1.21362 1.47125 0.90770 0.87378 0.89088 1.25275 0.96924 0.96280 0.98122 1.70051 1.44557 1.08627 1.26725 0.85660 0.78353 0.79270 0.80210 1.19139 1.20211 1.20186 1.21108 1.09683 0.94397 1.00018 1.20542 0.97310 0.98085 0.92754 0.91789 0.93533 0.92401 0.84517 0.90208 0.95685 0.95065 0.89435 0.93742 0.90214 0.91494 0.91011 0.92743 0.92413 0.92404 0.90018 0.93811 0.87437 0.86744 0.92166 0.85687 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.14 37.16 0.34 -1.68 16 2 C 0.14 1.90 2.79 -68.87 -0.19 1.71 16 3 H 0.08 1.00 7.66 -51.93 -0.40 0.60 16 4 N -0.68 -8.19 5.71 -107.95 -0.62 -8.81 16 5 C 0.06 0.66 5.16 -3.83 -0.02 0.64 16 6 C 0.05 0.48 5.11 -3.82 -0.02 0.46 16 7 N -0.52 -4.78 5.35 -230.28 -1.23 -6.01 16 8 C 0.04 0.29 6.70 -2.76 -0.02 0.27 16 9 C -0.13 -0.82 6.51 -25.37 -0.17 -0.99 16 10 C -0.10 -0.65 3.65 -88.76 -0.32 -0.98 16 11 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 12 C -0.14 -0.78 9.15 37.16 0.34 -0.44 16 13 C 0.04 0.30 4.81 -1.79 -0.01 0.29 16 14 C -0.17 -2.83 4.96 -104.58 -0.52 -3.35 16 15 C -0.05 -0.96 9.31 -39.61 -0.37 -1.33 16 16 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16 17 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16 18 O -0.18 -5.26 9.76 0.03 0.00 -5.26 16 19 C -0.39 -11.07 9.49 30.88 0.29 -10.78 16 20 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 21 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 23 Si 0.94 20.82 29.55 -169.99 -5.02 15.79 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 C -0.23 -5.16 9.17 -39.39 -0.36 -5.52 16 28 C -0.07 -1.27 9.66 -39.61 -0.38 -1.65 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.46 7.45 -51.93 -0.39 0.08 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.34 3.74 7.82 -39.29 -0.31 3.43 16 33 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 34 H 0.03 0.24 6.47 -51.93 -0.34 -0.09 16 35 H 0.03 0.29 7.97 -51.93 -0.41 -0.12 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.35 7.66 -51.93 -0.40 -0.05 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.39 7.84 -51.93 -0.41 -0.01 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.30 8.13 -51.93 -0.42 -0.13 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.66 7.79 -51.93 -0.40 0.25 16 45 H 0.04 0.35 7.93 -51.93 -0.41 -0.06 16 46 H 0.11 1.64 7.25 -52.49 -0.38 1.26 16 47 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 48 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 50 H 0.10 1.65 8.03 -52.49 -0.42 1.23 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -30.61 395.47 -10.92 -41.53 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.61 Total: 5.19 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -2.16 Total: -23.46 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: -1.09 Total: -39.75 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.61 -10.92 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775336637.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.688 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds