Wall clock time and date at job start Tue Mar 31 2020 13:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46961 * 2 1 4 4 N 1.46902 * 109.46720 * 240.00608 * 2 1 3 5 5 C 1.46899 * 111.00336 * 85.00103 * 4 2 1 6 6 C 1.52996 * 109.47265 * 179.97438 * 5 4 2 7 7 N 1.46902 * 109.47307 * 185.10354 * 6 5 4 8 8 C 1.47900 * 111.00240 * 184.52814 * 7 6 5 9 9 C 1.53990 * 107.06071 * 145.84479 * 8 7 6 10 10 C 1.54599 * 105.13927 * 358.77033 * 9 8 7 11 11 H 1.09001 * 110.72209 * 96.57922 * 10 9 8 12 12 C 1.53001 * 110.72403 * 219.68518 * 10 9 8 13 13 C 1.48732 * 111.04259 * 302.10208 * 7 6 5 14 14 C 1.50697 * 109.47142 * 120.00548 * 2 1 3 15 15 C 1.38293 * 119.93183 * 79.72973 * 14 2 1 16 16 C 1.38105 * 120.07073 * 179.72710 * 15 14 2 17 17 C 1.38877 * 119.92434 * 0.54125 * 16 15 14 18 18 O 1.35757 * 120.06811 * 179.75213 * 17 16 15 19 19 C 1.34829 * 117.00122 * 185.58852 * 18 17 16 20 20 H 1.08000 * 119.99819 * 354.93749 * 19 18 17 21 21 C 1.38650 * 119.99781 * 174.92952 * 19 18 17 22 22 N 1.31555 * 120.00266 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46913 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47519 * 120.00402 * 23 21 19 26 26 H 1.48503 * 109.47050 * 240.00856 * 23 21 19 27 27 C 1.38878 * 119.86714 * 359.72854 * 17 16 15 28 28 C 1.38101 * 119.92926 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.47253 * 299.99859 * 1 2 3 30 30 H 1.09006 * 109.47569 * 59.99864 * 1 2 3 31 31 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 32 32 H 1.00896 * 111.00091 * 321.04008 * 4 2 1 33 33 H 1.09007 * 109.46908 * 59.99538 * 5 4 2 34 34 H 1.08999 * 109.47206 * 299.99871 * 5 4 2 35 35 H 1.09002 * 109.46834 * 65.10310 * 6 5 4 36 36 H 1.08994 * 109.47631 * 305.10368 * 6 5 4 37 37 H 1.08999 * 109.91756 * 26.48568 * 8 7 6 38 38 H 1.09003 * 109.91360 * 265.19448 * 8 7 6 39 39 H 1.09004 * 110.30545 * 239.85487 * 9 8 7 40 40 H 1.08997 * 110.39608 * 117.73079 * 9 8 7 41 41 H 1.09000 * 109.46861 * 56.15019 * 12 10 9 42 42 H 1.08996 * 109.46891 * 296.14962 * 12 10 9 43 43 H 1.08999 * 109.47088 * 176.15003 * 12 10 9 44 44 H 1.09000 * 110.83751 * 81.95948 * 13 7 6 45 45 H 1.09003 * 110.58439 * 318.77192 * 13 7 6 46 46 H 1.08000 * 119.97004 * 359.97438 * 15 14 2 47 47 H 1.07996 * 120.03502 * 180.27152 * 16 15 14 48 48 H 0.97005 * 120.00158 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.03831 * 180.02562 * 27 17 16 50 50 H 1.07998 * 119.96479 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2227 -2.3469 6 6 2.5960 -0.5326 -3.5743 7 7 2.7749 0.4077 -4.6886 8 6 3.1677 -0.3034 -5.9245 9 6 2.5259 0.4513 -7.1034 10 6 1.7263 1.6055 -6.4566 11 1 2.3076 2.5276 -6.4616 12 6 0.3897 1.8065 -7.1735 13 6 1.5015 1.1071 -5.0069 14 6 2.0323 -0.7105 1.2304 15 6 2.0609 -2.0927 1.2657 16 6 2.5259 -2.7467 2.3896 17 6 2.9547 -2.0149 3.4894 18 8 3.4077 -2.6549 4.5976 19 6 3.6988 -1.8909 5.6697 20 1 3.6466 -0.8147 5.5959 21 6 4.0651 -2.4869 6.8668 22 7 4.1290 -3.7978 6.9564 23 14 4.4678 -1.4284 8.3523 24 1 4.3211 0.0051 7.9931 25 1 3.5375 -1.7579 9.4618 26 1 5.8646 -1.6907 8.7830 27 6 2.9195 -0.6271 3.4529 28 6 2.4581 0.0211 2.3241 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.4495 -1.4978 -1.4101 33 1 2.7588 1.0464 -2.1182 34 1 1.0870 0.6165 -2.5525 35 1 1.8743 -1.2988 -3.8577 36 1 3.5509 -1.0024 -3.3385 37 1 2.7998 -1.3290 -5.8956 38 1 4.2529 -0.2982 -6.0269 39 1 1.8574 -0.2088 -7.6562 40 1 3.2961 0.8486 -7.7645 41 1 -0.1697 0.8710 -7.1681 42 1 0.5724 2.1147 -8.2029 43 1 -0.1857 2.5769 -6.6602 44 1 1.3414 1.9476 -4.3316 45 1 0.6621 0.4129 -4.9646 46 1 1.7229 -2.6613 0.4120 47 1 2.5521 -3.8261 2.4149 48 1 4.3856 -4.2148 7.7939 49 1 3.2526 -0.0552 4.3064 50 1 2.4301 1.1003 2.2953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775336637.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:22 Heat of formation + Delta-G solvation = -25.329629 kcal Electronic energy + Delta-G solvation = -25796.643558 eV Core-core repulsion = 22209.032646 eV Total energy + Delta-G solvation = -3587.610912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84029 -40.16773 -39.01073 -37.11940 -34.75086 -34.18776 -32.28389 -31.74377 -30.47207 -29.32189 -27.97298 -27.34514 -26.39748 -24.03303 -23.66753 -22.81779 -21.80431 -21.33292 -20.99760 -19.73357 -18.80647 -17.27160 -16.94663 -16.67190 -16.33807 -16.29503 -15.97300 -15.51567 -15.41414 -15.16293 -15.05012 -14.73463 -14.38801 -14.15292 -14.03121 -13.97567 -13.79440 -13.59624 -13.50506 -13.24097 -13.08701 -12.88934 -12.64638 -12.55291 -12.39865 -12.22488 -12.09982 -11.97885 -11.95791 -11.77095 -11.62279 -11.58032 -11.39152 -11.13523 -10.77512 -9.72628 -9.39579 -9.29401 -8.83314 -8.45617 -6.13416 0.64979 0.75632 1.35119 1.43699 1.53592 2.18690 2.76656 2.89558 3.19287 3.47351 3.56111 3.67886 3.77331 3.96439 3.99330 4.10066 4.18489 4.21083 4.25244 4.30080 4.39783 4.41498 4.49994 4.57928 4.61992 4.63813 4.73139 4.73808 4.79661 4.84386 4.88310 4.89845 4.98770 5.01347 5.06035 5.10104 5.13681 5.19308 5.24225 5.28192 5.30078 5.33271 5.43759 5.62594 5.75204 5.80801 5.94575 6.05374 6.07273 6.19088 6.29304 6.51853 6.99367 7.81892 8.78104 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.033275 B = 0.001880 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.262704 B =14891.195989 C =15079.157586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.147 3.853 3 H 0.085 0.915 4 N -0.689 5.689 5 C 0.073 3.927 6 C 0.056 3.944 7 N -0.531 5.531 8 C 0.033 3.967 9 C -0.124 4.124 10 C -0.097 4.097 11 H 0.079 0.921 12 C -0.140 4.140 13 C 0.038 3.962 14 C -0.140 4.140 15 C -0.046 4.046 16 C -0.206 4.206 17 C 0.109 3.891 18 O -0.236 6.236 19 C -0.412 4.412 20 H 0.101 0.899 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.019 2.981 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.269 1.269 27 C -0.242 4.242 28 C -0.069 4.069 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.345 0.655 33 H 0.068 0.932 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.045 0.955 46 H 0.142 0.858 47 H 0.110 0.890 48 H 0.272 0.728 49 H 0.116 0.884 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.448 12.155 -27.543 31.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.038 3.962 3 H 0.103 0.897 4 N -0.321 5.321 5 C -0.057 4.057 6 C -0.073 4.073 7 N -0.256 5.256 8 C -0.094 4.094 9 C -0.162 4.162 10 C -0.116 4.116 11 H 0.097 0.903 12 C -0.197 4.197 13 C -0.090 4.090 14 C -0.142 4.142 15 C -0.064 4.064 16 C -0.226 4.226 17 C 0.059 3.941 18 O -0.143 6.143 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.194 1.194 27 C -0.261 4.261 28 C -0.088 4.088 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.164 0.836 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.159 0.841 47 H 0.128 0.872 48 H 0.081 0.919 49 H 0.134 0.866 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.286 12.206 -27.045 30.554 hybrid contribution -1.010 -0.665 0.764 1.431 sum -8.295 11.541 -26.281 29.878 Atomic orbital electron populations 1.22418 0.95393 1.02528 1.02528 1.20123 0.93017 0.96503 0.86590 0.89726 1.60394 1.58222 1.10053 1.03421 1.21834 0.99440 0.95226 0.89163 1.22134 1.00917 0.93536 0.90706 1.64715 1.29172 1.26742 1.04941 1.22888 1.01107 0.96247 0.89203 1.22487 0.99674 0.97080 0.96994 1.22080 0.97173 0.98619 0.93708 0.90304 1.21747 0.95540 1.01909 1.00539 1.23377 0.90511 0.98227 0.96872 1.19636 1.05316 0.93322 0.95900 1.20659 0.96215 0.94219 0.95344 1.20463 1.08671 0.99397 0.94020 1.19934 0.93283 0.92470 0.88393 1.83939 1.73959 1.36762 1.19607 1.21851 1.47500 0.91422 0.88024 0.88219 1.26591 0.96519 0.97805 1.01294 1.70196 1.47099 1.10891 1.27889 0.84524 0.78331 0.77796 0.75501 1.17510 1.19300 1.19356 1.21206 1.10213 0.93485 1.01207 1.20921 0.96152 0.99941 0.91754 0.92115 0.91271 0.92320 0.83616 0.91341 0.94283 0.94471 0.90950 0.93701 0.90586 0.90715 0.90400 0.92675 0.91711 0.92119 0.90141 0.93647 0.84060 0.87228 0.91917 0.86584 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 9.14 71.98 0.66 -2.53 16 2 C 0.15 3.33 2.79 44.17 0.12 3.46 16 3 H 0.08 1.85 7.66 -2.38 -0.02 1.84 16 4 N -0.69 -14.26 5.71 -495.45 -2.83 -17.08 16 5 C 0.07 1.28 5.16 86.30 0.45 1.73 16 6 C 0.06 0.96 5.11 86.30 0.44 1.40 16 7 N -0.53 -8.79 5.35 -882.49 -4.72 -13.51 16 8 C 0.03 0.47 6.70 86.45 0.58 1.05 16 9 C -0.12 -1.34 6.51 31.47 0.20 -1.14 16 10 C -0.10 -1.07 3.65 -9.59 -0.03 -1.11 16 11 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 12 C -0.14 -1.16 9.15 71.98 0.66 -0.50 16 13 C 0.04 0.51 4.81 86.61 0.42 0.92 16 14 C -0.14 -4.41 4.96 -19.84 -0.10 -4.51 16 15 C -0.05 -1.58 9.31 22.25 0.21 -1.37 16 16 C -0.21 -9.08 9.99 22.39 0.22 -8.86 16 17 C 0.11 5.61 6.65 22.58 0.15 5.76 16 18 O -0.24 -14.61 9.76 -22.81 -0.22 -14.83 16 19 C -0.41 -24.60 9.49 67.92 0.64 -23.95 16 20 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 21 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 22 N -0.92 -57.71 13.67 21.61 0.30 -57.41 16 23 Si 1.02 43.78 29.55 68.60 2.03 45.80 16 24 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 C -0.24 -10.87 9.17 22.39 0.21 -10.66 16 28 C -0.07 -2.45 9.66 22.25 0.21 -2.23 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.04 7.45 -2.38 -0.02 1.02 16 31 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 32 H 0.34 6.32 7.82 -89.70 -0.70 5.61 16 33 H 0.07 1.40 8.06 -2.38 -0.02 1.38 16 34 H 0.04 0.60 6.47 -2.39 -0.02 0.59 16 35 H 0.04 0.59 7.97 -2.39 -0.02 0.58 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 0.62 7.66 -2.39 -0.02 0.60 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 0.70 7.84 -2.39 -0.02 0.68 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 0.46 8.13 -2.39 -0.02 0.44 16 42 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 44 H 0.08 1.09 7.79 -2.39 -0.02 1.07 16 45 H 0.05 0.60 7.93 -2.39 -0.02 0.58 16 46 H 0.14 3.87 7.25 -2.91 -0.02 3.85 16 47 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 48 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 49 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 50 H 0.14 3.92 8.03 -2.91 -0.02 3.90 16 Total: -1.00 -70.98 395.47 0.27 -70.72 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.21 Total: 29.86 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 5.51 Total: -43.54 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -7.25 Total: -88.01 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.22 Total: -14.83 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -70.98 0.27 -70.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775336637.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.387 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds