Wall clock time and date at job start Tue Mar 31 2020 13:21:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47298 * 2 1
4 4 N 1.46893 * 109.47051 * 120.00129 * 2 1 3
5 5 C 1.46908 * 111.00015 * 274.99933 * 4 2 1
6 6 C 1.53002 * 109.47286 * 180.02562 * 5 4 2
7 7 N 1.46892 * 109.47115 * 180.02562 * 6 5 4
8 8 C 1.48525 * 111.00371 * 52.60043 * 7 6 5
9 9 C 1.54936 * 103.23163 * 159.72439 * 8 7 6
10 10 C 1.54601 * 102.91853 * 322.58374 * 9 8 7
11 11 H 1.08994 * 110.31214 * 263.04610 * 10 9 8
12 12 C 1.53005 * 110.39355 * 140.91413 * 10 9 8
13 13 C 1.47898 * 110.99929 * 170.00050 * 7 6 5
14 14 C 1.50703 * 109.47139 * 239.99923 * 2 1 3
15 15 C 1.38299 * 119.93055 * 279.72820 * 14 2 1
16 16 C 1.38102 * 120.06754 * 179.72579 * 15 14 2
17 17 C 1.38880 * 119.92807 * 0.54589 * 16 15 14
18 18 O 1.35752 * 120.06474 * 179.75232 * 17 16 15
19 19 C 1.34834 * 116.99790 * 174.44160 * 18 17 16
20 20 H 1.08006 * 119.99997 * 5.05994 * 19 18 17
21 21 C 1.38648 * 119.99900 * 185.05290 * 19 18 17
22 22 N 1.31559 * 119.99909 * 180.02562 * 21 19 18
23 23 Si 1.86795 * 120.00156 * 0.02562 * 21 19 18
24 24 H 1.48503 * 109.47240 * 89.99841 * 23 21 19
25 25 H 1.48501 * 109.47291 * 209.99908 * 23 21 19
26 26 H 1.48500 * 109.47265 * 330.00119 * 23 21 19
27 27 C 1.38881 * 119.86614 * 359.72661 * 17 16 15
28 28 C 1.38099 * 119.92501 * 0.02562 * 27 17 16
29 29 H 1.09010 * 109.47055 * 60.00018 * 1 2 3
30 30 H 1.09000 * 109.47130 * 300.00446 * 1 2 3
31 31 H 1.09000 * 109.47298 * 179.97438 * 1 2 3
32 32 H 1.00897 * 111.00445 * 38.95309 * 4 2 1
33 33 H 1.08998 * 109.46866 * 300.00147 * 5 4 2
34 34 H 1.08995 * 109.47119 * 59.99877 * 5 4 2
35 35 H 1.09006 * 109.46421 * 300.00286 * 6 5 4
36 36 H 1.09003 * 109.47221 * 59.99443 * 6 5 4
37 37 H 1.09008 * 110.66749 * 278.15636 * 8 7 6
38 38 H 1.09005 * 110.66753 * 41.28645 * 8 7 6
39 39 H 1.08998 * 110.72693 * 204.23357 * 9 8 7
40 40 H 1.08998 * 110.87866 * 81.01242 * 9 8 7
41 41 H 1.08997 * 109.46600 * 304.23805 * 12 10 9
42 42 H 1.08997 * 109.46628 * 64.23761 * 12 10 9
43 43 H 1.08997 * 109.46946 * 184.23650 * 12 10 9
44 44 H 1.09003 * 109.91707 * 333.50287 * 13 7 6
45 45 H 1.08999 * 109.92195 * 94.79982 * 13 7 6
46 46 H 1.08003 * 119.96237 * 0.02562 * 15 14 2
47 47 H 1.07997 * 120.03371 * 180.27544 * 16 15 14
48 48 H 0.97006 * 120.00311 * 180.02562 * 22 21 19
49 49 H 1.07992 * 120.03590 * 180.02562 * 27 17 16
50 50 H 1.08010 * 119.96221 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6925 1.1994
5 6 2.0824 0.2226 2.3469
6 6 2.5962 -0.5329 3.5742
7 7 2.6584 0.3820 4.7217
8 6 1.3592 1.0733 4.9225
9 6 1.4319 1.5437 6.3969
10 6 2.1587 0.3729 7.0978
11 1 1.4357 -0.2972 7.5628
12 6 3.1391 0.9046 8.1453
13 6 2.9196 -0.3575 5.9756
14 6 2.0323 -0.7104 -1.2305
15 6 2.0714 -2.0925 -1.2617
16 6 2.5259 -2.7466 -2.3899
17 6 2.9546 -2.0147 -3.4896
18 8 3.4066 -2.6547 -4.5982
19 6 3.6984 -1.8904 -5.6700
20 1 3.6474 -0.8141 -5.5958
21 6 4.0641 -2.4862 -6.8673
22 7 4.3493 -1.7405 -7.9130
23 14 4.1519 -4.3477 -6.9959
24 1 2.8316 -4.8772 -7.4222
25 1 5.1833 -4.7268 -7.9947
26 1 4.5105 -4.9189 -5.6729
27 6 2.9195 -0.6268 -3.4531
28 6 2.4591 0.0212 -2.3238
29 1 -0.3634 0.5139 -0.8901
30 1 -0.3633 0.5139 0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 1.4495 -1.4979 1.4100
33 1 2.7588 1.0462 2.1182
34 1 1.0871 0.6163 2.5525
35 1 1.9200 -1.3567 3.8029
36 1 3.5916 -0.9263 3.3683
37 1 1.2697 1.9269 4.2504
38 1 0.5291 0.3813 4.7799
39 1 0.4317 1.6783 6.8086
40 1 2.0101 2.4636 6.4832
41 1 3.8323 1.6010 7.6736
42 1 2.5868 1.4184 8.9320
43 1 3.6966 0.0730 8.5763
44 1 2.5559 -1.3811 5.8857
45 1 3.9881 -0.3579 6.1909
46 1 1.7416 -2.6610 -0.4046
47 1 2.5520 -3.8259 -2.4153
48 1 4.6048 -2.1573 -8.7508
49 1 3.2518 -0.0550 -4.3068
50 1 2.4318 1.1005 -2.2946
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000775336640.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:21:32
Heat of formation + Delta-G solvation = -3.194522 kcal
Electronic energy + Delta-G solvation = -25809.101631 eV
Core-core repulsion = 22222.450570 eV
Total energy + Delta-G solvation = -3586.651061 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-39.66676 -39.24346 -37.71420 -35.92301 -33.98216 -32.35177 -31.15703 -30.22060
-29.97141 -28.18484 -27.47324 -25.36167 -25.15702 -23.17389 -22.46303 -21.88294
-20.84969 -20.39591 -19.93422 -17.79193 -17.26780 -16.50794 -16.16163 -15.85417
-15.19394 -14.97768 -14.43707 -14.29656 -14.10447 -13.91239 -13.79240 -13.68177
-13.57441 -13.37265 -12.98705 -12.85117 -12.64795 -12.43975 -12.25736 -12.23801
-12.09802 -11.90151 -11.65167 -11.40611 -11.33375 -11.18511 -11.12420 -11.06005
-10.95998 -10.64802 -10.59071 -10.50617 -10.10665 -9.34302 -8.82927 -8.73928
-8.40570 -8.18331 -7.23970 -6.38242 -4.04622 2.19584 2.27732 3.24138
3.27578 3.42877 3.54352 4.11839 4.26572 4.29314 4.32975 4.47052
4.58168 4.83182 4.88473 4.91121 4.94829 5.01567 5.08870 5.10287
5.13511 5.18391 5.25479 5.30877 5.32898 5.38262 5.44491 5.54332
5.61176 5.63486 5.67696 5.70827 5.71968 5.74641 5.78071 5.89714
5.92235 5.94135 6.11994 6.19523 6.39340 6.55544 6.61891 6.71693
6.81434 6.95794 7.15690 7.33288 7.35843 7.39748 7.66587 7.84362
8.08064 8.97416 9.60918 10.69565
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.031836 B = 0.001912 C = 0.001871
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.285121 B =14639.130731 C =14960.215487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.142 3.858
3 H 0.077 0.923
4 N -0.679 5.679
5 C 0.061 3.939
6 C 0.049 3.951
7 N -0.515 5.515
8 C 0.032 3.968
9 C -0.121 4.121
10 C -0.105 4.105
11 H 0.072 0.928
12 C -0.141 4.141
13 C 0.040 3.960
14 C -0.158 4.158
15 C -0.055 4.055
16 C -0.194 4.194
17 C 0.158 3.842
18 O -0.220 6.220
19 C -0.388 4.388
20 H 0.106 0.894
21 C 0.062 3.938
22 N -0.881 5.881
23 Si 0.905 3.095
24 H -0.274 1.274
25 H -0.283 1.283
26 H -0.260 1.260
27 C -0.220 4.220
28 C -0.069 4.069
29 H 0.064 0.936
30 H 0.047 0.953
31 H 0.057 0.943
32 H 0.337 0.663
33 H 0.079 0.921
34 H 0.027 0.973
35 H 0.032 0.968
36 H 0.087 0.913
37 H 0.082 0.918
38 H 0.043 0.957
39 H 0.069 0.931
40 H 0.076 0.924
41 H 0.060 0.940
42 H 0.054 0.946
43 H 0.055 0.945
44 H 0.044 0.956
45 H 0.081 0.919
46 H 0.110 0.890
47 H 0.114 0.886
48 H 0.279 0.721
49 H 0.132 0.868
50 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.401 4.779 28.270 29.611
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.032 3.968
3 H 0.096 0.904
4 N -0.309 5.309
5 C -0.069 4.069
6 C -0.079 4.079
7 N -0.239 5.239
8 C -0.095 4.095
9 C -0.159 4.159
10 C -0.124 4.124
11 H 0.091 0.909
12 C -0.199 4.199
13 C -0.088 4.088
14 C -0.159 4.159
15 C -0.074 4.074
16 C -0.213 4.213
17 C 0.106 3.894
18 O -0.125 6.125
19 C -0.464 4.464
20 H 0.123 0.877
21 C -0.141 4.141
22 N -0.519 5.519
23 Si 0.731 3.269
24 H -0.200 1.200
25 H -0.208 1.208
26 H -0.184 1.184
27 C -0.239 4.239
28 C -0.088 4.088
29 H 0.083 0.917
30 H 0.066 0.934
31 H 0.076 0.924
32 H 0.155 0.845
33 H 0.098 0.902
34 H 0.046 0.954
35 H 0.050 0.950
36 H 0.105 0.895
37 H 0.101 0.899
38 H 0.061 0.939
39 H 0.087 0.913
40 H 0.095 0.905
41 H 0.079 0.921
42 H 0.073 0.927
43 H 0.074 0.926
44 H 0.062 0.938
45 H 0.099 0.901
46 H 0.128 0.872
47 H 0.133 0.867
48 H 0.089 0.911
49 H 0.149 0.851
50 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -6.185 4.990 27.701 28.818
hybrid contribution -1.503 -1.176 0.010 1.908
sum -7.688 3.814 27.710 29.009
Atomic orbital electron populations
1.22490 0.97196 1.02124 1.01643 1.20189 0.91825 0.96840 0.87934
0.90449 1.60513 1.57811 1.09416 1.03210 1.21987 0.99161 0.95948
0.89771 1.22279 1.02107 0.93492 0.90068 1.64765 1.29675 1.26780
1.02720 1.23253 0.90760 0.98648 0.96885 1.22592 1.00342 0.98469
0.94461 1.22007 0.97449 0.97096 0.95825 0.90946 1.21823 0.98865
1.01080 0.98116 1.22984 1.01146 0.95638 0.89075 1.19135 1.08247
0.93558 0.95002 1.20301 0.97892 0.93433 0.95777 1.20201 1.08491
0.99192 0.93444 1.19131 0.91752 0.90959 0.87515 1.83574 1.72838
1.36627 1.19472 1.20764 1.46676 0.92158 0.86798 0.87676 1.24458
0.95762 1.00163 0.93669 1.69650 1.44521 1.36129 1.01649 0.86183
0.78200 0.83783 0.78740 1.19966 1.20833 1.18372 1.21225 1.08279
0.94321 1.00066 1.20601 0.97174 0.98370 0.92662 0.91705 0.93434
0.92404 0.84514 0.90213 0.95449 0.94966 0.89488 0.89924 0.93910
0.91253 0.90516 0.92078 0.92705 0.92639 0.93811 0.90073 0.87245
0.86749 0.91127 0.85053 0.87499
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.93 9.14 37.16 0.34 -1.59 16
2 C 0.14 1.79 2.79 -68.87 -0.19 1.60 16
3 H 0.08 0.98 7.66 -51.93 -0.40 0.58 16
4 N -0.68 -7.79 5.70 -107.95 -0.61 -8.41 16
5 C 0.06 0.60 5.14 -3.82 -0.02 0.58 16
6 C 0.05 0.46 5.29 -3.83 -0.02 0.44 16
7 N -0.51 -4.58 5.40 -230.45 -1.24 -5.83 16
8 C 0.03 0.25 5.10 -1.90 -0.01 0.24 16
9 C -0.12 -0.77 6.61 -24.87 -0.16 -0.94 16
10 C -0.10 -0.66 3.58 -89.25 -0.32 -0.98 16
11 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
12 C -0.14 -0.78 8.90 37.16 0.33 -0.45 16
13 C 0.04 0.30 6.36 -2.75 -0.02 0.29 16
14 C -0.16 -2.58 4.96 -104.57 -0.52 -3.10 16
15 C -0.06 -0.94 9.32 -39.61 -0.37 -1.31 16
16 C -0.19 -3.89 9.99 -39.39 -0.39 -4.29 16
17 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16
18 O -0.22 -5.89 8.59 0.03 0.00 -5.89 16
19 C -0.39 -11.08 9.95 30.88 0.31 -10.77 16
20 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16
21 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16
22 N -0.88 -25.68 13.96 55.48 0.77 -24.91 16
23 Si 0.91 21.94 28.62 -169.99 -4.86 17.07 16
24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16
25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
26 H -0.26 -6.33 7.11 56.52 0.40 -5.92 16
27 C -0.22 -4.79 9.17 -39.39 -0.36 -5.15 16
28 C -0.07 -1.26 9.66 -39.61 -0.38 -1.64 16
29 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16
30 H 0.05 0.45 7.45 -51.93 -0.39 0.06 16
31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16
32 H 0.34 3.52 7.81 -39.29 -0.31 3.21 16
33 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16
34 H 0.03 0.25 6.09 -51.93 -0.32 -0.06 16
35 H 0.03 0.29 7.81 -51.93 -0.41 -0.12 16
36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
37 H 0.08 0.63 7.66 -51.92 -0.40 0.24 16
38 H 0.04 0.33 8.00 -51.93 -0.42 -0.09 16
39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
40 H 0.08 0.51 7.85 -51.93 -0.41 0.10 16
41 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16
42 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16
43 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16
44 H 0.04 0.33 7.57 -51.93 -0.39 -0.06 16
45 H 0.08 0.63 7.68 -51.93 -0.40 0.23 16
46 H 0.11 1.56 7.23 -52.48 -0.38 1.18 16
47 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16
48 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16
49 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16
50 H 0.11 1.68 8.03 -52.48 -0.42 1.26 16
LS Contribution 393.11 15.07 5.92 5.92
Total: -1.00 -29.48 393.11 -10.73 -40.22
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: -8.56 Total: 3.78 kcal
Atomic # 6 Polarization: -19.81 SS G_CDS: -2.15 Total: -21.96 kcal
Atomic # 7 Polarization: -38.06 SS G_CDS: -1.08 Total: -39.14 kcal
Atomic # 8 Polarization: -5.89 SS G_CDS: 0.00 Total: -5.89 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.07 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -29.48 -10.73 -40.22 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000775336640.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.025 kcal
(2) G-P(sol) polarization free energy of solvation -29.484 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.540 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.195 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds