Wall clock time and date at job start Tue Mar 31 2020 13:21:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47298 * 2 1
4 4 N 1.46893 * 109.47051 * 120.00129 * 2 1 3
5 5 C 1.46908 * 111.00015 * 274.99933 * 4 2 1
6 6 C 1.53002 * 109.47286 * 180.02562 * 5 4 2
7 7 N 1.46892 * 109.47115 * 180.02562 * 6 5 4
8 8 C 1.48525 * 111.00371 * 52.60043 * 7 6 5
9 9 C 1.54936 * 103.23163 * 159.72439 * 8 7 6
10 10 C 1.54601 * 102.91853 * 322.58374 * 9 8 7
11 11 H 1.08994 * 110.31214 * 263.04610 * 10 9 8
12 12 C 1.53005 * 110.39355 * 140.91413 * 10 9 8
13 13 C 1.47898 * 110.99929 * 170.00050 * 7 6 5
14 14 C 1.50703 * 109.47139 * 239.99923 * 2 1 3
15 15 C 1.38299 * 119.93055 * 279.72820 * 14 2 1
16 16 C 1.38102 * 120.06754 * 179.72579 * 15 14 2
17 17 C 1.38880 * 119.92807 * 0.54589 * 16 15 14
18 18 O 1.35752 * 120.06474 * 179.75232 * 17 16 15
19 19 C 1.34834 * 116.99790 * 174.44160 * 18 17 16
20 20 H 1.08006 * 119.99997 * 5.05994 * 19 18 17
21 21 C 1.38648 * 119.99900 * 185.05290 * 19 18 17
22 22 N 1.31559 * 119.99909 * 180.02562 * 21 19 18
23 23 Si 1.86795 * 120.00156 * 0.02562 * 21 19 18
24 24 H 1.48503 * 109.47240 * 89.99841 * 23 21 19
25 25 H 1.48501 * 109.47291 * 209.99908 * 23 21 19
26 26 H 1.48500 * 109.47265 * 330.00119 * 23 21 19
27 27 C 1.38881 * 119.86614 * 359.72661 * 17 16 15
28 28 C 1.38099 * 119.92501 * 0.02562 * 27 17 16
29 29 H 1.09010 * 109.47055 * 60.00018 * 1 2 3
30 30 H 1.09000 * 109.47130 * 300.00446 * 1 2 3
31 31 H 1.09000 * 109.47298 * 179.97438 * 1 2 3
32 32 H 1.00897 * 111.00445 * 38.95309 * 4 2 1
33 33 H 1.08998 * 109.46866 * 300.00147 * 5 4 2
34 34 H 1.08995 * 109.47119 * 59.99877 * 5 4 2
35 35 H 1.09006 * 109.46421 * 300.00286 * 6 5 4
36 36 H 1.09003 * 109.47221 * 59.99443 * 6 5 4
37 37 H 1.09008 * 110.66749 * 278.15636 * 8 7 6
38 38 H 1.09005 * 110.66753 * 41.28645 * 8 7 6
39 39 H 1.08998 * 110.72693 * 204.23357 * 9 8 7
40 40 H 1.08998 * 110.87866 * 81.01242 * 9 8 7
41 41 H 1.08997 * 109.46600 * 304.23805 * 12 10 9
42 42 H 1.08997 * 109.46628 * 64.23761 * 12 10 9
43 43 H 1.08997 * 109.46946 * 184.23650 * 12 10 9
44 44 H 1.09003 * 109.91707 * 333.50287 * 13 7 6
45 45 H 1.08999 * 109.92195 * 94.79982 * 13 7 6
46 46 H 1.08003 * 119.96237 * 0.02562 * 15 14 2
47 47 H 1.07997 * 120.03371 * 180.27544 * 16 15 14
48 48 H 0.97006 * 120.00311 * 180.02562 * 22 21 19
49 49 H 1.07992 * 120.03590 * 180.02562 * 27 17 16
50 50 H 1.08010 * 119.96221 * 179.97438 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6925 1.1994
5 6 2.0824 0.2226 2.3469
6 6 2.5962 -0.5329 3.5742
7 7 2.6584 0.3820 4.7217
8 6 1.3592 1.0733 4.9225
9 6 1.4319 1.5437 6.3969
10 6 2.1587 0.3729 7.0978
11 1 1.4357 -0.2972 7.5628
12 6 3.1391 0.9046 8.1453
13 6 2.9196 -0.3575 5.9756
14 6 2.0323 -0.7104 -1.2305
15 6 2.0714 -2.0925 -1.2617
16 6 2.5259 -2.7466 -2.3899
17 6 2.9546 -2.0147 -3.4896
18 8 3.4066 -2.6547 -4.5982
19 6 3.6984 -1.8904 -5.6700
20 1 3.6474 -0.8141 -5.5958
21 6 4.0641 -2.4862 -6.8673
22 7 4.3493 -1.7405 -7.9130
23 14 4.1519 -4.3477 -6.9959
24 1 2.8316 -4.8772 -7.4222
25 1 5.1833 -4.7268 -7.9947
26 1 4.5105 -4.9189 -5.6729
27 6 2.9195 -0.6268 -3.4531
28 6 2.4591 0.0212 -2.3238
29 1 -0.3634 0.5139 -0.8901
30 1 -0.3633 0.5139 0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 1.4495 -1.4979 1.4100
33 1 2.7588 1.0462 2.1182
34 1 1.0871 0.6163 2.5525
35 1 1.9200 -1.3567 3.8029
36 1 3.5916 -0.9263 3.3683
37 1 1.2697 1.9269 4.2504
38 1 0.5291 0.3813 4.7799
39 1 0.4317 1.6783 6.8086
40 1 2.0101 2.4636 6.4832
41 1 3.8323 1.6010 7.6736
42 1 2.5868 1.4184 8.9320
43 1 3.6966 0.0730 8.5763
44 1 2.5559 -1.3811 5.8857
45 1 3.9881 -0.3579 6.1909
46 1 1.7416 -2.6610 -0.4046
47 1 2.5520 -3.8259 -2.4153
48 1 4.6048 -2.1573 -8.7508
49 1 3.2518 -0.0550 -4.3068
50 1 2.4318 1.1005 -2.2946
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000775336640.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:21:31
Heat of formation + Delta-G solvation = -21.482972 kcal
Electronic energy + Delta-G solvation = -25809.894678 eV
Core-core repulsion = 22222.450570 eV
Total energy + Delta-G solvation = -3587.444108 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.94720 -40.22216 -39.10837 -37.18020 -34.79774 -34.36511 -32.17186 -31.73650
-30.57863 -29.55671 -28.20940 -27.24242 -25.83068 -24.06001 -23.87684 -23.19090
-21.64489 -21.26436 -20.91604 -19.70213 -19.08441 -17.25205 -17.01443 -16.71774
-16.55512 -16.18605 -15.82494 -15.67860 -15.41892 -15.14303 -14.93728 -14.71616
-14.41787 -14.31628 -14.12627 -14.01525 -13.97965 -13.84288 -13.49560 -13.31981
-12.98347 -12.87281 -12.67673 -12.46030 -12.44643 -12.26350 -12.12202 -11.98919
-11.98427 -11.76493 -11.64034 -11.51912 -11.45022 -11.24337 -10.88096 -9.75826
-9.38052 -9.30919 -8.91743 -8.48943 -6.21143 0.61332 0.69587 1.31190
1.35497 1.52221 2.28776 2.73813 2.86226 3.09486 3.19085 3.46457
3.70411 3.77502 3.94160 3.96277 4.06827 4.14422 4.19114 4.22496
4.35878 4.38760 4.39932 4.50126 4.57307 4.61721 4.63569 4.65526
4.71536 4.82512 4.87579 4.89362 4.92896 4.98956 5.01152 5.03772
5.08157 5.15935 5.21950 5.25779 5.26837 5.28508 5.43914 5.44463
5.59275 5.76690 5.82704 5.93769 5.95925 6.06853 6.17713 6.29496
6.52079 6.85621 7.61350 8.62782
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.031836 B = 0.001912 C = 0.001871
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 879.285121 B =14639.130731 C =14960.215487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.145 3.855
3 H 0.082 0.918
4 N -0.688 5.688
5 C 0.070 3.930
6 C 0.056 3.944
7 N -0.529 5.529
8 C 0.031 3.969
9 C -0.118 4.118
10 C -0.103 4.103
11 H 0.080 0.920
12 C -0.139 4.139
13 C 0.037 3.963
14 C -0.133 4.133
15 C -0.048 4.048
16 C -0.193 4.193
17 C 0.115 3.885
18 O -0.248 6.248
19 C -0.398 4.398
20 H 0.080 0.920
21 C 0.008 3.992
22 N -0.924 5.924
23 Si 0.972 3.028
24 H -0.265 1.265
25 H -0.267 1.267
26 H -0.264 1.264
27 C -0.236 4.236
28 C -0.074 4.074
29 H 0.058 0.942
30 H 0.068 0.932
31 H 0.061 0.939
32 H 0.346 0.654
33 H 0.067 0.933
34 H 0.041 0.959
35 H 0.039 0.961
36 H 0.072 0.928
37 H 0.081 0.919
38 H 0.046 0.954
39 H 0.082 0.918
40 H 0.072 0.928
41 H 0.052 0.948
42 H 0.062 0.938
43 H 0.058 0.942
44 H 0.044 0.956
45 H 0.075 0.925
46 H 0.148 0.852
47 H 0.126 0.874
48 H 0.284 0.716
49 H 0.106 0.894
50 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.105 4.216 31.734 33.282
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.036 3.964
3 H 0.100 0.900
4 N -0.319 5.319
5 C -0.059 4.059
6 C -0.073 4.073
7 N -0.254 5.254
8 C -0.096 4.096
9 C -0.156 4.156
10 C -0.122 4.122
11 H 0.098 0.902
12 C -0.196 4.196
13 C -0.090 4.090
14 C -0.134 4.134
15 C -0.066 4.066
16 C -0.212 4.212
17 C 0.066 3.934
18 O -0.155 6.155
19 C -0.475 4.475
20 H 0.097 0.903
21 C -0.190 4.190
22 N -0.565 5.565
23 Si 0.794 3.206
24 H -0.190 1.190
25 H -0.192 1.192
26 H -0.188 1.188
27 C -0.256 4.256
28 C -0.092 4.092
29 H 0.077 0.923
30 H 0.087 0.913
31 H 0.080 0.920
32 H 0.165 0.835
33 H 0.085 0.915
34 H 0.059 0.941
35 H 0.057 0.943
36 H 0.090 0.910
37 H 0.100 0.900
38 H 0.064 0.936
39 H 0.101 0.899
40 H 0.091 0.909
41 H 0.071 0.929
42 H 0.081 0.919
43 H 0.077 0.923
44 H 0.063 0.937
45 H 0.094 0.906
46 H 0.166 0.834
47 H 0.144 0.856
48 H 0.094 0.906
49 H 0.124 0.876
50 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -7.907 4.443 31.214 32.505
hybrid contribution -1.073 -0.831 -0.723 1.538
sum -8.981 3.612 30.491 31.991
Atomic orbital electron populations
1.22415 0.95254 1.02705 1.02496 1.20131 0.93123 0.96492 0.86682
0.89981 1.60385 1.58185 1.10048 1.03325 1.21888 0.99589 0.95238
0.89212 1.22149 1.01349 0.93682 0.90122 1.64745 1.30661 1.27013
1.03009 1.23285 0.90175 0.98510 0.97651 1.22593 1.01050 0.98211
0.93773 1.22016 0.97560 0.97094 0.95518 0.90178 1.21796 0.98681
1.01070 0.98085 1.23016 1.01096 0.95796 0.89129 1.19678 1.04493
0.93656 0.95576 1.20729 0.96270 0.93953 0.95688 1.20526 1.07647
0.99955 0.93102 1.19679 0.93891 0.92027 0.87778 1.83513 1.75475
1.36596 1.19966 1.20704 1.47176 0.91484 0.88121 0.90297 1.25284
0.95582 1.04908 0.93189 1.69735 1.46436 1.38004 1.02355 0.85205
0.78836 0.77973 0.78604 1.19032 1.19179 1.18831 1.21230 1.09468
0.94059 1.00803 1.20895 0.96505 0.99888 0.91919 0.92291 0.91264
0.91976 0.83456 0.91494 0.94054 0.94285 0.90982 0.90044 0.93552
0.89923 0.90900 0.92913 0.91863 0.92299 0.93729 0.90617 0.83432
0.85613 0.90628 0.87650 0.84978
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.02 9.14 71.98 0.66 -2.36 16
2 C 0.15 3.15 2.79 44.17 0.12 3.27 16
3 H 0.08 1.78 7.66 -2.39 -0.02 1.76 16
4 N -0.69 -13.22 5.70 -495.45 -2.82 -16.04 16
5 C 0.07 1.17 5.14 86.30 0.44 1.61 16
6 C 0.06 0.90 5.29 86.31 0.46 1.36 16
7 N -0.53 -8.35 5.40 -883.01 -4.76 -13.12 16
8 C 0.03 0.40 5.10 86.65 0.44 0.84 16
9 C -0.12 -1.23 6.61 31.80 0.21 -1.02 16
10 C -0.10 -1.07 3.58 -9.91 -0.04 -1.11 16
11 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
12 C -0.14 -1.28 8.90 71.98 0.64 -0.64 16
13 C 0.04 0.51 6.36 86.45 0.55 1.06 16
14 C -0.13 -3.98 4.96 -19.83 -0.10 -4.08 16
15 C -0.05 -1.50 9.32 22.25 0.21 -1.29 16
16 C -0.19 -7.56 9.99 22.39 0.22 -7.33 16
17 C 0.11 5.53 6.65 22.58 0.15 5.68 16
18 O -0.25 -13.84 8.59 -22.80 -0.20 -14.03 16
19 C -0.40 -24.07 9.95 67.92 0.68 -23.39 16
20 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16
21 C 0.01 0.50 5.49 84.83 0.47 0.96 16
22 N -0.92 -56.14 13.96 21.61 0.30 -55.84 16
23 Si 0.97 46.36 28.62 68.60 1.96 48.32 16
24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
26 H -0.26 -12.61 7.11 99.48 0.71 -11.91 16
27 C -0.24 -10.70 9.17 22.39 0.21 -10.50 16
28 C -0.07 -2.61 9.66 22.25 0.21 -2.39 16
29 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16
30 H 0.07 0.98 7.45 -2.39 -0.02 0.96 16
31 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16
32 H 0.35 5.67 7.81 -89.70 -0.70 4.97 16
33 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16
34 H 0.04 0.60 6.09 -2.39 -0.01 0.58 16
35 H 0.04 0.58 7.81 -2.38 -0.02 0.56 16
36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
37 H 0.08 1.04 7.66 -2.38 -0.02 1.02 16
38 H 0.05 0.56 8.00 -2.38 -0.02 0.54 16
39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
40 H 0.07 0.82 7.85 -2.39 -0.02 0.80 16
41 H 0.05 0.58 8.11 -2.39 -0.02 0.56 16
42 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
43 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
44 H 0.04 0.59 7.57 -2.39 -0.02 0.57 16
45 H 0.08 1.09 7.68 -2.39 -0.02 1.07 16
46 H 0.15 3.50 7.23 -2.91 -0.02 3.48 16
47 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16
48 H 0.28 15.81 8.31 -92.70 -0.77 15.04 16
49 H 0.11 5.26 5.64 -2.91 -0.02 5.25 16
50 H 0.13 3.95 8.03 -2.91 -0.02 3.93 16
Total: -1.00 -67.05 393.11 0.23 -66.82
By element:
Atomic # 1 Polarization: 23.00 SS G_CDS: 0.21 Total: 23.22 kcal
Atomic # 6 Polarization: -44.87 SS G_CDS: 5.53 Total: -39.34 kcal
Atomic # 7 Polarization: -77.71 SS G_CDS: -7.28 Total: -84.99 kcal
Atomic # 8 Polarization: -13.84 SS G_CDS: -0.20 Total: -14.03 kcal
Atomic # 14 Polarization: 46.36 SS G_CDS: 1.96 Total: 48.32 kcal
Total: -67.05 0.23 -66.82 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000775336640.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.341 kcal
(2) G-P(sol) polarization free energy of solvation -67.053 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.713 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.824 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds