Wall clock time and date at job start Tue Mar 31 2020 13:17:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08996 * 109.47456 * 2 1
4 4 N 1.46901 * 109.47439 * 239.99219 * 2 1 3
5 5 C 1.46902 * 110.99393 * 85.00444 * 4 2 1
6 6 C 1.53001 * 109.46791 * 180.02562 * 5 4 2
7 7 N 1.46902 * 109.47167 * 179.97438 * 6 5 4
8 8 C 1.47846 * 111.00064 * 291.45863 * 7 6 5
9 9 C 1.54905 * 104.79556 * 213.63701 * 8 7 6
10 10 C 1.55131 * 101.65477 * 37.06732 * 9 8 7
11 11 C 1.47446 * 111.00137 * 170.61488 * 7 6 5
12 12 H 1.09000 * 109.89019 * 242.66435 * 11 7 6
13 13 C 1.52997 * 109.88592 * 3.85284 * 11 7 6
14 14 C 1.50703 * 109.47063 * 119.99733 * 2 1 3
15 15 C 1.38300 * 119.93122 * 79.72217 * 14 2 1
16 16 C 1.38101 * 120.06761 * 179.72710 * 15 14 2
17 17 C 1.38880 * 119.92995 * 0.55085 * 16 15 14
18 18 O 1.35750 * 120.06548 * 179.74593 * 17 16 15
19 19 C 1.34837 * 116.99826 * 185.35086 * 18 17 16
20 20 H 1.07999 * 119.99601 * 356.09457 * 19 18 17
21 21 C 1.38654 * 120.00017 * 176.08481 * 19 18 17
22 22 N 1.31553 * 119.99822 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 119.99920 * 180.02562 * 21 19 18
24 24 H 1.48502 * 109.47022 * 60.00209 * 23 21 19
25 25 H 1.48494 * 109.47188 * 180.02562 * 23 21 19
26 26 H 1.48508 * 109.47008 * 300.00378 * 23 21 19
27 27 C 1.38874 * 119.86226 * 359.72375 * 17 16 15
28 28 C 1.38101 * 119.93106 * 0.02562 * 27 17 16
29 29 H 1.08996 * 109.47456 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47118 * 300.00557 * 1 2 3
31 31 H 1.09000 * 109.46852 * 59.99954 * 1 2 3
32 32 H 1.00897 * 110.99988 * 321.05336 * 4 2 1
33 33 H 1.09003 * 109.46934 * 299.99636 * 5 4 2
34 34 H 1.08992 * 109.47355 * 60.00477 * 5 4 2
35 35 H 1.09005 * 109.47171 * 299.99514 * 6 5 4
36 36 H 1.08999 * 109.47562 * 59.99829 * 6 5 4
37 37 H 1.08998 * 110.37176 * 332.46898 * 8 7 6
38 38 H 1.09000 * 110.37302 * 94.80203 * 8 7 6
39 39 H 1.09003 * 110.98924 * 278.97203 * 9 8 7
40 40 H 1.09002 * 111.01837 * 155.18021 * 9 8 7
41 41 H 1.08995 * 110.70844 * 205.96433 * 10 9 8
42 42 H 1.09006 * 110.70377 * 82.72840 * 10 9 8
43 43 H 1.09003 * 109.47338 * 54.76720 * 13 11 7
44 44 H 1.09004 * 109.47280 * 174.76863 * 13 11 7
45 45 H 1.09001 * 109.47061 * 294.76838 * 13 11 7
46 46 H 1.07998 * 119.96405 * 0.02562 * 15 14 2
47 47 H 1.08002 * 120.03700 * 180.27571 * 16 15 14
48 48 H 0.97008 * 119.99643 * 179.97438 * 22 21 19
49 49 H 1.08009 * 120.03329 * 180.02562 * 27 17 16
50 50 H 1.08004 * 119.96369 * 180.02562 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0197 -0.6926 -1.1993
5 6 2.0826 0.2224 -2.3468
6 6 2.5952 -0.5334 -3.5743
7 7 2.6576 0.3814 -4.7220
8 6 1.3015 0.7769 -5.1586
9 6 1.4121 0.9386 -6.6952
10 6 2.3853 -0.2125 -7.0622
11 6 3.3531 -0.2459 -5.8607
12 1 4.2575 0.3146 -6.0973
13 6 3.7091 -1.6942 -5.5192
14 6 2.0323 -0.7104 1.2305
15 6 2.0607 -2.0926 1.2661
16 6 2.5258 -2.7464 2.3901
17 6 2.9544 -2.0145 3.4898
18 8 3.4073 -2.6545 4.5981
19 6 3.7031 -1.8898 5.6685
20 1 3.6364 -0.8141 5.5987
21 6 4.0927 -2.4844 6.8589
22 7 4.1742 -3.7947 6.9438
23 14 4.5019 -1.4251 8.3421
24 1 3.3132 -0.6176 8.7167
25 1 4.8881 -2.2960 9.4811
26 1 5.6301 -0.5193 8.0073
27 6 2.9193 -0.6267 3.4531
28 6 2.4581 0.0213 2.3242
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 1.4496 -1.4980 -1.4099
33 1 1.0872 0.6161 -2.5525
34 1 2.7590 1.0459 -2.1182
35 1 3.5906 -0.9275 -3.3689
36 1 1.9186 -1.3568 -3.8029
37 1 0.5806 -0.0019 -4.9098
38 1 1.0148 1.7219 -4.6972
39 1 1.8374 1.9077 -6.9562
40 1 0.4429 0.7982 -7.1738
41 1 2.9220 0.0155 -7.9831
42 1 1.8487 -1.1571 -7.1513
43 1 2.8088 -2.2273 -5.2136
44 1 4.1386 -2.1792 -6.3959
45 1 4.4335 -1.7079 -4.7049
46 1 1.7234 -2.6612 0.4121
47 1 2.5519 -3.8258 2.4157
48 1 4.4472 -4.2107 7.7766
49 1 3.2525 -0.0548 4.3067
50 1 2.4309 1.1006 2.2949
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000776163769.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:17:40
Heat of formation + Delta-G solvation = 2.123100 kcal
Electronic energy + Delta-G solvation = -26070.573004 eV
Core-core repulsion = 22484.152532 eV
Total energy + Delta-G solvation = -3586.420472 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-39.88720 -39.11068 -37.54072 -35.69002 -33.16242 -32.19362 -31.79018 -30.42871
-30.03469 -27.89339 -26.62298 -25.82822 -25.34491 -23.00756 -22.47362 -21.73587
-21.26268 -20.11035 -19.47467 -17.87167 -16.93433 -16.70546 -16.03838 -15.81516
-15.19077 -14.82895 -14.46397 -14.40668 -14.10051 -13.97394 -13.90634 -13.55491
-13.40010 -13.08397 -12.88179 -12.66745 -12.63564 -12.44696 -12.24199 -12.10064
-11.74945 -11.63570 -11.56271 -11.38335 -11.28057 -11.21326 -11.12335 -11.07260
-10.87174 -10.63628 -10.57947 -10.36900 -10.35287 -9.27256 -8.77288 -8.57528
-8.31342 -8.08129 -7.08065 -6.39806 -3.98377 2.30647 2.40433 3.16135
3.17029 3.19798 3.53971 4.00950 4.18162 4.31473 4.42417 4.55027
4.68536 4.86735 4.90590 5.00490 5.07279 5.08290 5.12317 5.18360
5.21247 5.29502 5.35799 5.36780 5.39436 5.43294 5.45816 5.56880
5.61273 5.67879 5.72716 5.74341 5.81557 5.84870 5.88523 5.98039
6.00279 6.03060 6.18583 6.29791 6.49307 6.72330 6.78347 6.81211
6.93539 7.08436 7.13890 7.36811 7.44397 7.49647 7.52520 7.90963
8.05445 9.05972 9.77557 10.78416
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.029093 B = 0.002009 C = 0.001959
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 962.203210 B =13935.987978 C =14287.549826
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.143 3.857
3 H 0.076 0.924
4 N -0.679 5.679
5 C 0.064 3.936
6 C 0.050 3.950
7 N -0.525 5.525
8 C 0.041 3.959
9 C -0.131 4.131
10 C -0.139 4.139
11 C 0.069 3.931
12 H 0.086 0.914
13 C -0.171 4.171
14 C -0.166 4.166
15 C -0.053 4.053
16 C -0.195 4.195
17 C 0.153 3.847
18 O -0.180 6.180
19 C -0.391 4.391
20 H 0.091 0.909
21 C 0.038 3.962
22 N -0.865 5.865
23 Si 0.940 3.060
24 H -0.270 1.270
25 H -0.278 1.278
26 H -0.270 1.270
27 C -0.233 4.233
28 C -0.068 4.068
29 H 0.057 0.943
30 H 0.063 0.937
31 H 0.046 0.954
32 H 0.336 0.664
33 H 0.024 0.976
34 H 0.078 0.922
35 H 0.090 0.910
36 H 0.034 0.966
37 H 0.044 0.956
38 H 0.079 0.921
39 H 0.075 0.925
40 H 0.071 0.929
41 H 0.073 0.927
42 H 0.067 0.933
43 H 0.058 0.942
44 H 0.059 0.941
45 H 0.067 0.933
46 H 0.107 0.893
47 H 0.114 0.886
48 H 0.269 0.731
49 H 0.125 0.875
50 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.148 8.219 -24.794 26.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.034 3.966
3 H 0.094 0.906
4 N -0.309 5.309
5 C -0.066 4.066
6 C -0.078 4.078
7 N -0.249 5.249
8 C -0.087 4.087
9 C -0.169 4.169
10 C -0.177 4.177
11 C -0.039 4.039
12 H 0.104 0.896
13 C -0.229 4.229
14 C -0.167 4.167
15 C -0.072 4.072
16 C -0.214 4.214
17 C 0.099 3.901
18 O -0.084 6.084
19 C -0.467 4.467
20 H 0.108 0.892
21 C -0.166 4.166
22 N -0.500 5.500
23 Si 0.765 3.235
24 H -0.196 1.196
25 H -0.203 1.203
26 H -0.195 1.195
27 C -0.252 4.252
28 C -0.087 4.087
29 H 0.076 0.924
30 H 0.082 0.918
31 H 0.065 0.935
32 H 0.154 0.846
33 H 0.042 0.958
34 H 0.096 0.904
35 H 0.108 0.892
36 H 0.052 0.948
37 H 0.062 0.938
38 H 0.097 0.903
39 H 0.094 0.906
40 H 0.090 0.910
41 H 0.092 0.908
42 H 0.086 0.914
43 H 0.077 0.923
44 H 0.078 0.922
45 H 0.086 0.914
46 H 0.126 0.874
47 H 0.132 0.868
48 H 0.079 0.921
49 H 0.143 0.857
50 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -5.087 8.321 -24.227 26.116
hybrid contribution -1.190 -0.068 0.336 1.238
sum -6.277 8.252 -23.891 26.044
Atomic orbital electron populations
1.22489 0.97360 1.02065 1.01503 1.20162 0.91698 0.96739 0.88015
0.90623 1.60525 1.57758 1.09415 1.03235 1.21913 0.99079 0.95848
0.89752 1.22351 1.02200 0.93377 0.89891 1.63620 1.15901 1.39783
1.05633 1.23088 0.90070 1.00716 0.94824 1.22698 0.99520 0.99187
0.95479 1.22884 0.97508 0.98871 0.98485 1.22420 0.97579 0.94142
0.89737 0.89629 1.22384 1.02119 0.96166 1.02217 1.19069 1.09097
0.93533 0.95005 1.20295 0.97706 0.93397 0.95778 1.20200 1.08383
0.99271 0.93533 1.19381 0.91398 0.90928 0.88354 1.83977 1.71010
1.35198 1.18207 1.21264 1.46849 0.90755 0.87842 0.89198 1.25268
0.96881 0.96287 0.98145 1.70033 1.44095 1.08692 1.27172 0.85797
0.79138 0.78911 0.79663 1.19568 1.20331 1.19542 1.21104 1.09722
0.94392 1.00024 1.20542 0.97304 0.98084 0.92755 0.92437 0.91829
0.93513 0.84607 0.95795 0.90372 0.89210 0.94807 0.93752 0.90310
0.90648 0.90995 0.90823 0.91437 0.92310 0.92222 0.91390 0.87450
0.86765 0.92067 0.85706 0.87814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.04 9.14 37.16 0.34 -1.70 16
2 C 0.14 1.91 2.79 -68.86 -0.19 1.72 16
3 H 0.08 1.01 7.66 -51.93 -0.40 0.61 16
4 N -0.68 -8.21 5.71 -107.95 -0.62 -8.82 16
5 C 0.06 0.67 5.52 -3.82 -0.02 0.65 16
6 C 0.05 0.48 3.93 -3.82 -0.02 0.46 16
7 N -0.52 -4.75 5.17 -223.35 -1.15 -5.91 16
8 C 0.04 0.32 5.75 -2.30 -0.01 0.31 16
9 C -0.13 -0.84 7.08 -24.60 -0.17 -1.01 16
10 C -0.14 -0.89 6.47 -24.91 -0.16 -1.05 16
11 C 0.07 0.54 4.02 -66.73 -0.27 0.27 16
12 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
13 C -0.17 -1.27 7.82 37.16 0.29 -0.98 16
14 C -0.17 -2.83 4.96 -104.57 -0.52 -3.35 16
15 C -0.05 -0.96 9.31 -39.61 -0.37 -1.33 16
16 C -0.19 -4.20 9.99 -39.39 -0.39 -4.59 16
17 C 0.15 3.77 6.65 -39.11 -0.26 3.51 16
18 O -0.18 -5.24 9.76 0.03 0.00 -5.24 16
19 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16
20 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16
21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16
22 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16
23 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16
24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16
25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
26 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16
27 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16
28 C -0.07 -1.27 9.66 -39.61 -0.38 -1.65 16
29 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16
30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
31 H 0.05 0.47 7.45 -51.93 -0.39 0.09 16
32 H 0.34 3.74 7.82 -39.29 -0.31 3.43 16
33 H 0.02 0.24 6.76 -51.93 -0.35 -0.11 16
34 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16
35 H 0.09 0.95 6.22 -51.93 -0.32 0.62 16
36 H 0.03 0.31 6.70 -51.93 -0.35 -0.03 16
37 H 0.04 0.35 7.63 -51.93 -0.40 -0.04 16
38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
42 H 0.07 0.43 7.85 -51.93 -0.41 0.02 16
43 H 0.06 0.45 6.66 -51.93 -0.35 0.11 16
44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
45 H 0.07 0.55 6.68 -51.93 -0.35 0.21 16
46 H 0.11 1.64 7.25 -52.49 -0.38 1.26 16
47 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16
48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
49 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16
50 H 0.10 1.66 8.03 -52.48 -0.42 1.23 16
LS Contribution 389.51 15.07 5.87 5.87
Total: -1.00 -30.49 389.51 -10.81 -41.30
By element:
Atomic # 1 Polarization: 14.40 SS G_CDS: -8.34 Total: 6.06 kcal
Atomic # 6 Polarization: -21.80 SS G_CDS: -2.30 Total: -24.10 kcal
Atomic # 7 Polarization: -38.66 SS G_CDS: -1.01 Total: -39.67 kcal
Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -30.49 -10.81 -41.30 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776163769.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.420 kcal
(2) G-P(sol) polarization free energy of solvation -30.491 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.929 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds