Wall clock time and date at job start Tue Mar 31 2020 13:17:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08996 * 109.47456 * 2 1
4 4 N 1.46901 * 109.47439 * 239.99219 * 2 1 3
5 5 C 1.46902 * 110.99393 * 85.00444 * 4 2 1
6 6 C 1.53001 * 109.46791 * 180.02562 * 5 4 2
7 7 N 1.46902 * 109.47167 * 179.97438 * 6 5 4
8 8 C 1.47846 * 111.00064 * 291.45863 * 7 6 5
9 9 C 1.54905 * 104.79556 * 213.63701 * 8 7 6
10 10 C 1.55131 * 101.65477 * 37.06732 * 9 8 7
11 11 C 1.47446 * 111.00137 * 170.61488 * 7 6 5
12 12 H 1.09000 * 109.89019 * 242.66435 * 11 7 6
13 13 C 1.52997 * 109.88592 * 3.85284 * 11 7 6
14 14 C 1.50703 * 109.47063 * 119.99733 * 2 1 3
15 15 C 1.38300 * 119.93122 * 79.72217 * 14 2 1
16 16 C 1.38101 * 120.06761 * 179.72710 * 15 14 2
17 17 C 1.38880 * 119.92995 * 0.55085 * 16 15 14
18 18 O 1.35750 * 120.06548 * 179.74593 * 17 16 15
19 19 C 1.34837 * 116.99826 * 185.35086 * 18 17 16
20 20 H 1.07999 * 119.99601 * 356.09457 * 19 18 17
21 21 C 1.38654 * 120.00017 * 176.08481 * 19 18 17
22 22 N 1.31553 * 119.99822 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 119.99920 * 180.02562 * 21 19 18
24 24 H 1.48502 * 109.47022 * 60.00209 * 23 21 19
25 25 H 1.48494 * 109.47188 * 180.02562 * 23 21 19
26 26 H 1.48508 * 109.47008 * 300.00378 * 23 21 19
27 27 C 1.38874 * 119.86226 * 359.72375 * 17 16 15
28 28 C 1.38101 * 119.93106 * 0.02562 * 27 17 16
29 29 H 1.08996 * 109.47456 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47118 * 300.00557 * 1 2 3
31 31 H 1.09000 * 109.46852 * 59.99954 * 1 2 3
32 32 H 1.00897 * 110.99988 * 321.05336 * 4 2 1
33 33 H 1.09003 * 109.46934 * 299.99636 * 5 4 2
34 34 H 1.08992 * 109.47355 * 60.00477 * 5 4 2
35 35 H 1.09005 * 109.47171 * 299.99514 * 6 5 4
36 36 H 1.08999 * 109.47562 * 59.99829 * 6 5 4
37 37 H 1.08998 * 110.37176 * 332.46898 * 8 7 6
38 38 H 1.09000 * 110.37302 * 94.80203 * 8 7 6
39 39 H 1.09003 * 110.98924 * 278.97203 * 9 8 7
40 40 H 1.09002 * 111.01837 * 155.18021 * 9 8 7
41 41 H 1.08995 * 110.70844 * 205.96433 * 10 9 8
42 42 H 1.09006 * 110.70377 * 82.72840 * 10 9 8
43 43 H 1.09003 * 109.47338 * 54.76720 * 13 11 7
44 44 H 1.09004 * 109.47280 * 174.76863 * 13 11 7
45 45 H 1.09001 * 109.47061 * 294.76838 * 13 11 7
46 46 H 1.07998 * 119.96405 * 0.02562 * 15 14 2
47 47 H 1.08002 * 120.03700 * 180.27571 * 16 15 14
48 48 H 0.97008 * 119.99643 * 179.97438 * 22 21 19
49 49 H 1.08009 * 120.03329 * 180.02562 * 27 17 16
50 50 H 1.08004 * 119.96369 * 180.02562 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0197 -0.6926 -1.1993
5 6 2.0826 0.2224 -2.3468
6 6 2.5952 -0.5334 -3.5743
7 7 2.6576 0.3814 -4.7220
8 6 1.3015 0.7769 -5.1586
9 6 1.4121 0.9386 -6.6952
10 6 2.3853 -0.2125 -7.0622
11 6 3.3531 -0.2459 -5.8607
12 1 4.2575 0.3146 -6.0973
13 6 3.7091 -1.6942 -5.5192
14 6 2.0323 -0.7104 1.2305
15 6 2.0607 -2.0926 1.2661
16 6 2.5258 -2.7464 2.3901
17 6 2.9544 -2.0145 3.4898
18 8 3.4073 -2.6545 4.5981
19 6 3.7031 -1.8898 5.6685
20 1 3.6364 -0.8141 5.5987
21 6 4.0927 -2.4844 6.8589
22 7 4.1742 -3.7947 6.9438
23 14 4.5019 -1.4251 8.3421
24 1 3.3132 -0.6176 8.7167
25 1 4.8881 -2.2960 9.4811
26 1 5.6301 -0.5193 8.0073
27 6 2.9193 -0.6267 3.4531
28 6 2.4581 0.0213 2.3242
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 1.4496 -1.4980 -1.4099
33 1 1.0872 0.6161 -2.5525
34 1 2.7590 1.0459 -2.1182
35 1 3.5906 -0.9275 -3.3689
36 1 1.9186 -1.3568 -3.8029
37 1 0.5806 -0.0019 -4.9098
38 1 1.0148 1.7219 -4.6972
39 1 1.8374 1.9077 -6.9562
40 1 0.4429 0.7982 -7.1738
41 1 2.9220 0.0155 -7.9831
42 1 1.8487 -1.1571 -7.1513
43 1 2.8088 -2.2273 -5.2136
44 1 4.1386 -2.1792 -6.3959
45 1 4.4335 -1.7079 -4.7049
46 1 1.7234 -2.6612 0.4121
47 1 2.5519 -3.8258 2.4157
48 1 4.4472 -4.2107 7.7766
49 1 3.2525 -0.0548 4.3067
50 1 2.4309 1.1006 2.2949
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000776163769.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:17:40
Heat of formation + Delta-G solvation = -17.294748 kcal
Electronic energy + Delta-G solvation = -26071.415025 eV
Core-core repulsion = 22484.152532 eV
Total energy + Delta-G solvation = -3587.262493 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.84871 -40.46784 -39.00979 -37.05378 -34.37566 -33.82364 -32.42453 -31.81255
-31.28157 -29.31612 -27.43485 -27.33420 -26.39666 -24.10146 -23.82659 -23.01264
-21.91784 -21.50797 -20.21883 -19.72464 -18.78952 -17.42140 -16.90196 -16.67586
-16.36446 -16.30874 -16.05047 -15.50545 -15.37896 -15.23717 -15.05533 -14.66278
-14.55000 -14.35898 -14.00841 -13.96577 -13.72064 -13.50482 -13.26926 -13.21845
-12.92835 -12.88515 -12.61078 -12.42353 -12.35695 -12.20536 -12.13925 -11.97345
-11.92926 -11.89485 -11.62787 -11.59706 -11.49380 -11.13701 -10.75716 -9.72180
-9.30673 -9.20174 -8.82787 -8.44978 -6.12735 0.65440 0.76297 1.35112
1.46246 1.51550 2.19312 2.76769 2.89663 3.19969 3.48234 3.56211
3.75699 3.80571 3.97036 3.98421 4.10376 4.18336 4.20565 4.27954
4.33544 4.40329 4.43018 4.48476 4.52454 4.60981 4.64333 4.65258
4.74072 4.75577 4.88647 4.89621 4.94520 5.02373 5.03529 5.07443
5.11444 5.14104 5.18295 5.23399 5.25739 5.28958 5.33881 5.43108
5.63217 5.75524 5.81806 6.05561 6.09101 6.13876 6.22158 6.30194
6.54055 6.99700 7.82162 8.78289
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.029093 B = 0.002009 C = 0.001959
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 962.203210 B =13935.987978 C =14287.549826
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.147 3.853
3 H 0.084 0.916
4 N -0.688 5.688
5 C 0.072 3.928
6 C 0.058 3.942
7 N -0.538 5.538
8 C 0.038 3.962
9 C -0.127 4.127
10 C -0.135 4.135
11 C 0.065 3.935
12 H 0.081 0.919
13 C -0.166 4.166
14 C -0.140 4.140
15 C -0.046 4.046
16 C -0.206 4.206
17 C 0.109 3.891
18 O -0.235 6.235
19 C -0.413 4.413
20 H 0.100 0.900
21 C -0.025 4.025
22 N -0.922 5.922
23 Si 1.019 2.981
24 H -0.257 1.257
25 H -0.272 1.272
26 H -0.258 1.258
27 C -0.242 4.242
28 C -0.069 4.069
29 H 0.058 0.942
30 H 0.059 0.941
31 H 0.068 0.932
32 H 0.344 0.656
33 H 0.035 0.965
34 H 0.066 0.934
35 H 0.077 0.923
36 H 0.038 0.962
37 H 0.045 0.955
38 H 0.078 0.922
39 H 0.075 0.925
40 H 0.084 0.916
41 H 0.083 0.917
42 H 0.069 0.931
43 H 0.055 0.945
44 H 0.069 0.931
45 H 0.056 0.944
46 H 0.142 0.858
47 H 0.110 0.890
48 H 0.272 0.728
49 H 0.117 0.883
50 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.446 10.445 -27.288 30.152
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.038 3.962
3 H 0.102 0.898
4 N -0.320 5.320
5 C -0.057 4.057
6 C -0.070 4.070
7 N -0.263 5.263
8 C -0.089 4.089
9 C -0.165 4.165
10 C -0.173 4.173
11 C -0.043 4.043
12 H 0.099 0.901
13 C -0.224 4.224
14 C -0.142 4.142
15 C -0.064 4.064
16 C -0.226 4.226
17 C 0.059 3.941
18 O -0.142 6.142
19 C -0.489 4.489
20 H 0.118 0.882
21 C -0.222 4.222
22 N -0.561 5.561
23 Si 0.838 3.162
24 H -0.182 1.182
25 H -0.196 1.196
26 H -0.182 1.182
27 C -0.261 4.261
28 C -0.088 4.088
29 H 0.077 0.923
30 H 0.078 0.922
31 H 0.087 0.913
32 H 0.163 0.837
33 H 0.054 0.946
34 H 0.084 0.916
35 H 0.095 0.905
36 H 0.057 0.943
37 H 0.063 0.937
38 H 0.096 0.904
39 H 0.093 0.907
40 H 0.103 0.897
41 H 0.102 0.898
42 H 0.088 0.912
43 H 0.074 0.926
44 H 0.088 0.912
45 H 0.075 0.925
46 H 0.159 0.841
47 H 0.128 0.872
48 H 0.081 0.919
49 H 0.135 0.865
50 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -6.409 10.572 -26.787 29.502
hybrid contribution -0.891 -0.670 0.736 1.336
sum -7.300 9.902 -26.051 28.810
Atomic orbital electron populations
1.22412 0.95455 1.02495 1.02472 1.20117 0.92976 0.96485 0.86661
0.89816 1.60404 1.58113 1.10031 1.03438 1.21821 0.99395 0.95174
0.89304 1.22205 1.01483 0.93453 0.89895 1.63596 1.16810 1.39890
1.05965 1.23125 0.89366 1.00579 0.95829 1.22697 1.00176 0.99149
0.94521 1.22863 0.97229 0.99047 0.98204 1.22465 0.97728 0.94072
0.90033 0.90140 1.22326 1.01704 0.96101 1.02262 1.19640 1.05309
0.93329 0.95890 1.20653 0.96200 0.94201 0.95334 1.20461 1.08710
0.99389 0.94005 1.19929 0.93351 0.92475 0.88342 1.83937 1.73945
1.36675 1.19647 1.21770 1.47196 0.91454 0.88481 0.88240 1.26594
0.96487 0.97824 1.01330 1.70186 1.46635 1.10953 1.28278 0.84650
0.79480 0.77058 0.75028 1.18160 1.19602 1.18225 1.21208 1.10232
0.93487 1.01217 1.20918 0.96161 0.99927 0.91764 0.92319 0.92159
0.91345 0.83702 0.94641 0.91577 0.90492 0.94345 0.93687 0.90412
0.90652 0.89729 0.89804 0.91206 0.92551 0.91221 0.92483 0.84071
0.87231 0.91914 0.86547 0.84461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.24 9.14 71.98 0.66 -2.58 16
2 C 0.15 3.37 2.79 44.17 0.12 3.49 16
3 H 0.08 1.87 7.66 -2.39 -0.02 1.85 16
4 N -0.69 -14.32 5.71 -495.45 -2.83 -17.15 16
5 C 0.07 1.31 5.52 86.30 0.48 1.78 16
6 C 0.06 0.98 3.93 86.30 0.34 1.32 16
7 N -0.54 -8.67 5.17 -860.53 -4.45 -13.11 16
8 C 0.04 0.51 5.75 86.77 0.50 1.01 16
9 C -0.13 -1.31 7.08 31.98 0.23 -1.08 16
10 C -0.14 -1.41 6.47 31.77 0.21 -1.21 16
11 C 0.06 0.90 4.02 45.26 0.18 1.08 16
12 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
13 C -0.17 -2.22 7.82 71.98 0.56 -1.66 16
14 C -0.14 -4.42 4.96 -19.83 -0.10 -4.52 16
15 C -0.05 -1.56 9.31 22.25 0.21 -1.36 16
16 C -0.21 -9.08 9.99 22.39 0.22 -8.86 16
17 C 0.11 5.61 6.65 22.58 0.15 5.76 16
18 O -0.24 -14.57 9.76 -22.81 -0.22 -14.79 16
19 C -0.41 -24.65 9.49 67.92 0.64 -24.01 16
20 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16
21 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16
22 N -0.92 -57.71 13.67 21.61 0.30 -57.42 16
23 Si 1.02 43.72 29.55 68.60 2.03 45.75 16
24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16
25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
26 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16
27 C -0.24 -10.88 9.17 22.39 0.21 -10.67 16
28 C -0.07 -2.45 9.66 22.25 0.21 -2.24 16
29 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16
30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
31 H 0.07 1.06 7.45 -2.39 -0.02 1.04 16
32 H 0.34 6.35 7.82 -89.70 -0.70 5.65 16
33 H 0.04 0.58 6.76 -2.39 -0.02 0.56 16
34 H 0.07 1.38 8.05 -2.39 -0.02 1.36 16
35 H 0.08 1.51 6.22 -2.38 -0.01 1.50 16
36 H 0.04 0.62 6.70 -2.39 -0.02 0.60 16
37 H 0.04 0.59 7.63 -2.39 -0.02 0.57 16
38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
42 H 0.07 0.71 7.85 -2.38 -0.02 0.69 16
43 H 0.06 0.77 6.66 -2.39 -0.02 0.76 16
44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
45 H 0.06 0.88 6.68 -2.39 -0.02 0.86 16
46 H 0.14 3.87 7.25 -2.91 -0.02 3.85 16
47 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16
48 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16
49 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16
50 H 0.14 3.93 8.03 -2.91 -0.02 3.91 16
Total: -1.00 -70.71 389.51 0.33 -70.38
By element:
Atomic # 1 Polarization: 30.87 SS G_CDS: 0.22 Total: 31.09 kcal
Atomic # 6 Polarization: -50.03 SS G_CDS: 5.29 Total: -44.74 kcal
Atomic # 7 Polarization: -80.70 SS G_CDS: -6.98 Total: -87.68 kcal
Atomic # 8 Polarization: -14.57 SS G_CDS: -0.22 Total: -14.79 kcal
Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal
Total: -70.71 0.33 -70.38 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776163769.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.085 kcal
(2) G-P(sol) polarization free energy of solvation -70.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds