Wall clock time and date at job start Tue Mar 31 2020 12:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46906 * 2 1 4 4 N 1.46905 * 109.47022 * 184.80824 * 3 2 1 5 5 C 1.46903 * 110.99824 * 289.31247 * 4 3 2 6 6 C 1.53001 * 109.47257 * 296.85516 * 5 4 3 7 7 C 1.46903 * 110.99751 * 165.36546 * 4 3 2 8 8 C 1.53002 * 109.46608 * 189.99976 * 7 4 3 9 9 N 1.46499 * 109.47040 * 180.02562 * 8 7 4 10 10 C 1.34777 * 119.99894 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00360 * 359.97438 * 10 9 8 12 12 C 1.50709 * 119.99918 * 179.97438 * 10 9 8 13 13 C 1.50697 * 109.46969 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12799 * 265.30078 * 13 12 10 15 15 C 1.38606 * 120.25017 * 180.32316 * 14 13 12 16 16 C 1.38664 * 120.49855 * 359.67140 * 15 14 13 17 17 C 1.37594 * 120.24747 * 0.02562 * 16 15 14 18 18 C 1.40690 * 120.13001 * 85.00104 * 13 12 10 19 19 C 1.41398 * 120.24329 * 359.97384 * 18 13 12 20 20 H 1.08004 * 120.00016 * 26.11134 * 19 18 13 21 21 C 1.39947 * 120.00260 * 206.11524 * 19 18 13 22 22 N 1.30823 * 119.99794 * 16.76580 * 21 19 18 23 23 Si 1.86794 * 120.00195 * 196.77180 * 21 19 18 24 24 H 1.48505 * 109.47030 * 265.01578 * 23 21 19 25 25 H 1.48505 * 109.47239 * 25.01521 * 23 21 19 26 26 H 1.48506 * 109.47376 * 145.01620 * 23 21 19 27 27 H 1.09001 * 109.47460 * 300.00048 * 1 2 3 28 28 H 1.09001 * 109.47522 * 60.00441 * 1 2 3 29 29 H 1.09000 * 109.47347 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46760 * 240.00199 * 2 1 3 31 31 H 1.08996 * 109.46780 * 120.00038 * 2 1 3 32 32 H 1.09002 * 109.47499 * 64.80509 * 3 2 1 33 33 H 1.09010 * 109.47302 * 304.80271 * 3 2 1 34 34 H 1.09005 * 109.46533 * 56.85285 * 5 4 3 35 35 H 1.08991 * 109.46878 * 176.84981 * 5 4 3 36 36 H 1.09006 * 109.47166 * 59.59085 * 6 5 4 37 37 H 1.08998 * 109.46919 * 179.59123 * 6 5 4 38 38 H 1.08993 * 109.46901 * 299.59106 * 6 5 4 39 39 H 1.08990 * 109.47582 * 69.99880 * 7 4 3 40 40 H 1.08998 * 109.46965 * 309.98857 * 7 4 3 41 41 H 1.08996 * 109.47663 * 59.99715 * 8 7 4 42 42 H 1.09002 * 109.46933 * 299.99769 * 8 7 4 43 43 H 0.97003 * 119.99973 * 359.97438 * 9 8 7 44 44 H 1.08996 * 109.47064 * 59.99365 * 12 10 9 45 45 H 1.08999 * 109.46618 * 299.99529 * 12 10 9 46 46 H 1.08010 * 119.87376 * 0.02562 * 14 13 12 47 47 H 1.07997 * 119.75590 * 179.69330 * 15 14 13 48 48 H 1.08003 * 119.87516 * 180.02562 * 16 15 14 49 49 H 1.08004 * 120.12455 * 180.02562 * 17 16 15 50 50 H 0.97001 * 120.00300 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5044 1.4441 -0.1161 5 6 4.1309 0.9552 1.1194 6 6 3.7943 1.9035 2.2719 7 6 4.0032 2.7809 -0.4659 8 6 5.4889 2.6939 -0.8210 9 7 5.9866 4.0270 -1.1693 10 6 7.2773 4.1942 -1.5192 11 8 8.0269 3.2413 -1.5454 12 6 7.7892 5.5656 -1.8781 13 6 9.2525 5.4799 -2.2277 14 6 10.2077 5.7285 -1.2684 15 6 11.5543 5.6570 -1.5889 16 6 11.9552 5.3282 -2.8750 17 6 11.0177 5.0696 -3.8484 18 6 9.6476 5.1393 -3.5343 19 6 8.6753 4.8751 -4.5263 20 1 7.6924 5.3162 -4.4502 21 6 8.9865 4.0419 -5.6068 22 7 10.0294 3.2544 -5.5464 23 14 7.9128 4.0542 -7.1353 24 1 6.9070 2.9656 -7.0426 25 1 7.2180 5.3624 -7.2417 26 1 8.7598 3.8445 -8.3370 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.7486 1.9309 0.9299 33 1 1.6080 1.9806 -0.8439 34 1 3.7544 -0.0420 1.3476 35 1 5.2119 0.9138 0.9867 36 1 2.7128 1.9504 2.3998 37 1 4.2532 1.5367 3.1900 38 1 4.1770 2.8989 2.0469 39 1 3.8712 3.4516 0.3830 40 1 3.4470 3.1637 -1.3216 41 1 5.6210 2.0231 -1.6699 42 1 6.0451 2.3109 0.0346 43 1 5.3869 4.7892 -1.1488 44 1 7.6574 6.2362 -1.0290 45 1 7.2327 5.9486 -2.7335 46 1 9.9068 5.9850 -0.2633 47 1 12.2971 5.8584 -0.8312 48 1 13.0072 5.2750 -3.1135 49 1 11.3321 4.8133 -4.8493 50 1 10.2450 2.6766 -6.2952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777404398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:06 Heat of formation + Delta-G solvation = -27.025398 kcal Electronic energy + Delta-G solvation = -26601.692445 eV Core-core repulsion = 23014.007999 eV Total energy + Delta-G solvation = -3587.684446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.33633 -38.59342 -37.22566 -34.64450 -33.52836 -33.41397 -31.69023 -30.55168 -29.40338 -28.74717 -26.64072 -25.35985 -24.88877 -23.87185 -21.54225 -20.87942 -20.44819 -19.99198 -19.12775 -17.12994 -16.54083 -16.42355 -16.13743 -15.57223 -15.23028 -14.86058 -14.55628 -14.32090 -14.20098 -13.95117 -13.52499 -13.42347 -13.08555 -12.84777 -12.76999 -12.51384 -12.29041 -12.18576 -12.05673 -11.71622 -11.60580 -11.45268 -11.39978 -11.19625 -11.07123 -11.05753 -10.97937 -10.81922 -10.64158 -10.55944 -10.35291 -9.42008 -9.28764 -9.07011 -9.01103 -8.54429 -8.48658 -7.25268 -7.23688 -6.64076 -4.24536 2.85468 3.01845 3.11607 3.14852 3.32419 3.43493 3.53790 4.00006 4.10949 4.59586 4.70087 4.75342 4.78858 4.94477 4.97354 5.09073 5.12454 5.17863 5.30013 5.33460 5.37698 5.47754 5.58097 5.70377 5.73557 5.76670 5.84312 5.91189 5.94067 5.99235 6.01122 6.08267 6.17039 6.28399 6.34986 6.43750 6.58458 6.79691 6.83800 6.87867 6.98665 7.18564 7.34791 7.48643 7.70974 7.96977 8.05633 8.13501 8.19229 8.39361 8.71639 8.98396 9.05583 9.08219 10.31278 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.003059 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.149180 B = 9152.355367 C =10697.041039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.051 3.949 4 N -0.533 5.533 5 C 0.042 3.958 6 C -0.194 4.194 7 C 0.042 3.958 8 C 0.126 3.874 9 N -0.748 5.748 10 C 0.516 3.484 11 O -0.510 6.510 12 C -0.068 4.068 13 C -0.182 4.182 14 C -0.080 4.080 15 C -0.243 4.243 16 C -0.105 4.105 17 C -0.163 4.163 18 C 0.131 3.869 19 C -0.460 4.460 20 H 0.075 0.925 21 C 0.079 3.921 22 N -0.789 5.789 23 Si 0.901 3.099 24 H -0.272 1.272 25 H -0.261 1.261 26 H -0.276 1.276 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.392 0.608 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.115 0.885 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.774 -1.730 9.997 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.077 4.077 4 N -0.256 5.256 5 C -0.086 4.086 6 C -0.253 4.253 7 C -0.086 4.086 8 C 0.001 3.999 9 N -0.404 5.404 10 C 0.302 3.698 11 O -0.382 6.382 12 C -0.108 4.108 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.262 4.262 16 C -0.124 4.124 17 C -0.182 4.182 18 C 0.128 3.872 19 C -0.489 4.489 20 H 0.093 0.907 21 C -0.139 4.139 22 N -0.414 5.414 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.185 1.185 26 H -0.201 1.201 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.225 0.775 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.133 0.867 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.934 -2.968 9.443 18.758 hybrid contribution -0.976 0.673 0.005 1.186 sum -16.910 -2.295 9.448 19.506 Atomic orbital electron populations 1.21738 0.95752 1.01725 1.01668 1.21511 0.95167 0.96421 1.02746 1.22219 0.87305 0.97478 1.00712 1.62111 1.05718 1.24303 1.33464 1.22278 1.00636 0.98394 0.87292 1.22421 1.01696 1.01196 0.99944 1.22306 0.95929 0.89977 1.00405 1.21113 0.92102 0.85588 1.01090 1.46048 1.11748 1.09610 1.72949 1.21074 0.80591 0.92346 0.75747 1.90711 1.55840 1.42271 1.49423 1.20242 0.96591 0.92740 1.01187 1.18992 0.91188 1.13918 0.94288 1.20284 0.93196 1.00191 0.96192 1.20288 0.94634 1.14692 0.96604 1.20667 0.97287 1.00395 0.94019 1.21254 0.92835 1.05322 0.98773 1.17326 0.92545 0.87089 0.90218 1.19435 0.99186 1.25444 1.04866 0.90744 1.25840 0.95198 0.93555 0.99337 1.69845 1.24591 1.16279 1.30708 0.86427 0.80492 0.79580 0.80975 1.19706 1.18487 1.20080 0.93015 0.92646 0.92581 0.90959 0.92131 0.94282 0.90933 0.90488 0.90002 0.92528 0.91967 0.92182 0.93862 0.90325 0.91008 0.92108 0.77509 0.90901 0.89082 0.89836 0.89733 0.89647 0.86701 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.94 5.86 -26.73 -0.16 -1.10 16 3 C 0.05 0.43 4.83 -3.82 -0.02 0.41 16 4 N -0.53 -5.50 4.68 -234.62 -1.10 -6.60 16 5 C 0.04 0.40 5.69 -3.82 -0.02 0.38 16 6 C -0.19 -1.64 9.27 37.16 0.34 -1.29 16 7 C 0.04 0.45 4.84 -3.82 -0.02 0.43 16 8 C 0.13 1.80 5.60 -4.04 -0.02 1.78 16 9 N -0.75 -11.39 5.56 -60.29 -0.33 -11.72 16 10 C 0.52 10.57 7.82 -10.98 -0.09 10.49 16 11 O -0.51 -13.22 16.03 5.56 0.09 -13.13 16 12 C -0.07 -1.34 5.35 -29.03 -0.16 -1.50 16 13 C -0.18 -4.46 4.43 -103.92 -0.46 -4.92 16 14 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 15 C -0.24 -5.77 10.05 -39.29 -0.39 -6.17 16 16 C -0.11 -2.62 10.02 -39.66 -0.40 -3.01 16 17 C -0.16 -4.42 8.68 -38.88 -0.34 -4.75 16 18 C 0.13 3.55 5.55 -106.83 -0.59 2.95 16 19 C -0.46 -12.25 8.45 -37.74 -0.32 -12.57 16 20 H 0.07 1.86 6.37 -52.48 -0.33 1.53 16 21 C 0.08 2.04 5.15 -17.34 -0.09 1.95 16 22 N -0.79 -21.48 11.02 55.55 0.61 -20.87 16 23 Si 0.90 19.20 29.59 -169.99 -5.03 14.17 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.47 6.86 -51.93 -0.36 0.11 16 32 H 0.04 0.31 5.92 -51.93 -0.31 0.00 16 33 H 0.07 0.61 7.84 -51.92 -0.41 0.20 16 34 H 0.08 0.68 6.63 -51.93 -0.34 0.33 16 35 H 0.08 0.90 6.43 -51.93 -0.33 0.56 16 36 H 0.06 0.44 6.25 -51.93 -0.32 0.12 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.55 6.31 -51.93 -0.33 0.22 16 39 H 0.04 0.41 6.03 -51.93 -0.31 0.10 16 40 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 0.92 6.54 -51.93 -0.34 0.58 16 43 H 0.39 4.54 8.47 -40.82 -0.35 4.20 16 44 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 45 H 0.09 1.72 6.49 -51.93 -0.34 1.38 16 46 H 0.08 1.73 8.06 -52.48 -0.42 1.30 16 47 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 48 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 49 H 0.12 3.20 6.27 -52.48 -0.33 2.87 16 50 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -32.13 393.02 -10.75 -42.87 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.17 Total: 9.16 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.74 Total: -19.80 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.82 Total: -39.19 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.13 -10.75 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777404398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.848 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds