Wall clock time and date at job start Tue Mar 31 2020 12:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46906 * 2 1 4 4 N 1.46905 * 109.47022 * 184.80824 * 3 2 1 5 5 C 1.46903 * 110.99824 * 289.31247 * 4 3 2 6 6 C 1.53001 * 109.47257 * 296.85516 * 5 4 3 7 7 C 1.46903 * 110.99751 * 165.36546 * 4 3 2 8 8 C 1.53002 * 109.46608 * 189.99976 * 7 4 3 9 9 N 1.46499 * 109.47040 * 180.02562 * 8 7 4 10 10 C 1.34777 * 119.99894 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00360 * 359.97438 * 10 9 8 12 12 C 1.50709 * 119.99918 * 179.97438 * 10 9 8 13 13 C 1.50697 * 109.46969 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12799 * 265.30078 * 13 12 10 15 15 C 1.38606 * 120.25017 * 180.32316 * 14 13 12 16 16 C 1.38664 * 120.49855 * 359.67140 * 15 14 13 17 17 C 1.37594 * 120.24747 * 0.02562 * 16 15 14 18 18 C 1.40690 * 120.13001 * 85.00104 * 13 12 10 19 19 C 1.41398 * 120.24329 * 359.97384 * 18 13 12 20 20 H 1.08004 * 120.00016 * 26.11134 * 19 18 13 21 21 C 1.39947 * 120.00260 * 206.11524 * 19 18 13 22 22 N 1.30823 * 119.99794 * 16.76580 * 21 19 18 23 23 Si 1.86794 * 120.00195 * 196.77180 * 21 19 18 24 24 H 1.48505 * 109.47030 * 265.01578 * 23 21 19 25 25 H 1.48505 * 109.47239 * 25.01521 * 23 21 19 26 26 H 1.48506 * 109.47376 * 145.01620 * 23 21 19 27 27 H 1.09001 * 109.47460 * 300.00048 * 1 2 3 28 28 H 1.09001 * 109.47522 * 60.00441 * 1 2 3 29 29 H 1.09000 * 109.47347 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46760 * 240.00199 * 2 1 3 31 31 H 1.08996 * 109.46780 * 120.00038 * 2 1 3 32 32 H 1.09002 * 109.47499 * 64.80509 * 3 2 1 33 33 H 1.09010 * 109.47302 * 304.80271 * 3 2 1 34 34 H 1.09005 * 109.46533 * 56.85285 * 5 4 3 35 35 H 1.08991 * 109.46878 * 176.84981 * 5 4 3 36 36 H 1.09006 * 109.47166 * 59.59085 * 6 5 4 37 37 H 1.08998 * 109.46919 * 179.59123 * 6 5 4 38 38 H 1.08993 * 109.46901 * 299.59106 * 6 5 4 39 39 H 1.08990 * 109.47582 * 69.99880 * 7 4 3 40 40 H 1.08998 * 109.46965 * 309.98857 * 7 4 3 41 41 H 1.08996 * 109.47663 * 59.99715 * 8 7 4 42 42 H 1.09002 * 109.46933 * 299.99769 * 8 7 4 43 43 H 0.97003 * 119.99973 * 359.97438 * 9 8 7 44 44 H 1.08996 * 109.47064 * 59.99365 * 12 10 9 45 45 H 1.08999 * 109.46618 * 299.99529 * 12 10 9 46 46 H 1.08010 * 119.87376 * 0.02562 * 14 13 12 47 47 H 1.07997 * 119.75590 * 179.69330 * 15 14 13 48 48 H 1.08003 * 119.87516 * 180.02562 * 16 15 14 49 49 H 1.08004 * 120.12455 * 180.02562 * 17 16 15 50 50 H 0.97001 * 120.00300 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5044 1.4441 -0.1161 5 6 4.1309 0.9552 1.1194 6 6 3.7943 1.9035 2.2719 7 6 4.0032 2.7809 -0.4659 8 6 5.4889 2.6939 -0.8210 9 7 5.9866 4.0270 -1.1693 10 6 7.2773 4.1942 -1.5192 11 8 8.0269 3.2413 -1.5454 12 6 7.7892 5.5656 -1.8781 13 6 9.2525 5.4799 -2.2277 14 6 10.2077 5.7285 -1.2684 15 6 11.5543 5.6570 -1.5889 16 6 11.9552 5.3282 -2.8750 17 6 11.0177 5.0696 -3.8484 18 6 9.6476 5.1393 -3.5343 19 6 8.6753 4.8751 -4.5263 20 1 7.6924 5.3162 -4.4502 21 6 8.9865 4.0419 -5.6068 22 7 10.0294 3.2544 -5.5464 23 14 7.9128 4.0542 -7.1353 24 1 6.9070 2.9656 -7.0426 25 1 7.2180 5.3624 -7.2417 26 1 8.7598 3.8445 -8.3370 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.7486 1.9309 0.9299 33 1 1.6080 1.9806 -0.8439 34 1 3.7544 -0.0420 1.3476 35 1 5.2119 0.9138 0.9867 36 1 2.7128 1.9504 2.3998 37 1 4.2532 1.5367 3.1900 38 1 4.1770 2.8989 2.0469 39 1 3.8712 3.4516 0.3830 40 1 3.4470 3.1637 -1.3216 41 1 5.6210 2.0231 -1.6699 42 1 6.0451 2.3109 0.0346 43 1 5.3869 4.7892 -1.1488 44 1 7.6574 6.2362 -1.0290 45 1 7.2327 5.9486 -2.7335 46 1 9.9068 5.9850 -0.2633 47 1 12.2971 5.8584 -0.8312 48 1 13.0072 5.2750 -3.1135 49 1 11.3321 4.8133 -4.8493 50 1 10.2450 2.6766 -6.2952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777404398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:05 Heat of formation + Delta-G solvation = -47.137234 kcal Electronic energy + Delta-G solvation = -26602.564560 eV Core-core repulsion = 23014.007999 eV Total energy + Delta-G solvation = -3588.556560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.77970 -39.66398 -38.98688 -35.88447 -35.45734 -34.25831 -33.42813 -31.48439 -31.30190 -29.83934 -28.18567 -26.85032 -26.00445 -24.83751 -22.82452 -22.41627 -22.03908 -21.05861 -20.53456 -19.05674 -17.76209 -17.43439 -17.32552 -17.19364 -16.53347 -16.33332 -16.02373 -15.57054 -15.28941 -15.15385 -14.95238 -14.58837 -14.43564 -14.36616 -14.00839 -13.67535 -13.54942 -13.28079 -13.04357 -12.94904 -12.87612 -12.76030 -12.70575 -12.62481 -12.48410 -12.40673 -12.13171 -12.09567 -11.83005 -11.77286 -11.30446 -11.28546 -11.16241 -10.99548 -10.72143 -9.96556 -9.24363 -9.20738 -9.15842 -8.56145 -6.24652 1.01444 1.14417 1.36273 1.49001 1.55042 1.92563 2.21632 2.27559 2.82027 3.12270 3.77178 3.82883 3.96017 4.01213 4.17762 4.18673 4.28505 4.31452 4.41774 4.42316 4.48874 4.51947 4.54671 4.63356 4.65960 4.73192 4.74255 4.81154 4.84255 4.93569 4.96682 5.04100 5.06332 5.09117 5.21385 5.26756 5.29511 5.34612 5.37596 5.46727 5.56403 5.58232 5.80871 6.05799 6.08363 6.14598 6.15950 6.23191 6.45428 6.72492 6.79241 7.01134 7.14097 7.54324 8.41968 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.003059 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.149180 B = 9152.355367 C =10697.041039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.053 3.947 4 N -0.550 5.550 5 C 0.042 3.958 6 C -0.187 4.187 7 C 0.055 3.945 8 C 0.130 3.870 9 N -0.724 5.724 10 C 0.515 3.485 11 O -0.575 6.575 12 C -0.066 4.066 13 C -0.188 4.188 14 C -0.091 4.091 15 C -0.246 4.246 16 C -0.117 4.117 17 C -0.196 4.196 18 C 0.096 3.904 19 C -0.484 4.484 20 H 0.084 0.916 21 C 0.029 3.971 22 N -0.833 5.833 23 Si 0.974 3.026 24 H -0.271 1.271 25 H -0.247 1.247 26 H -0.270 1.270 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.050 0.950 43 H 0.414 0.586 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.117 0.883 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.450 -0.460 11.358 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.074 4.074 4 N -0.274 5.274 5 C -0.086 4.086 6 C -0.245 4.245 7 C -0.074 4.074 8 C 0.005 3.995 9 N -0.379 5.379 10 C 0.303 3.697 11 O -0.453 6.453 12 C -0.106 4.106 13 C -0.190 4.190 14 C -0.109 4.109 15 C -0.265 4.265 16 C -0.135 4.135 17 C -0.216 4.216 18 C 0.094 3.906 19 C -0.514 4.514 20 H 0.101 0.899 21 C -0.184 4.184 22 N -0.459 5.459 23 Si 0.795 3.205 24 H -0.196 1.196 25 H -0.170 1.170 26 H -0.194 1.194 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.251 0.749 44 H 0.134 0.866 45 H 0.119 0.881 46 H 0.135 0.865 47 H 0.133 0.867 48 H 0.122 0.878 49 H 0.112 0.888 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.669 -1.655 10.828 21.645 hybrid contribution -0.110 0.271 -0.279 0.405 sum -18.780 -1.383 10.549 21.584 Atomic orbital electron populations 1.21707 0.94539 1.02159 1.02115 1.21484 0.96169 0.95936 1.02040 1.22255 0.85852 0.97957 1.01385 1.62075 1.07031 1.24146 1.34120 1.22247 0.99427 0.99259 0.87693 1.22350 1.02360 1.00373 0.99458 1.22161 0.92928 0.90764 1.01500 1.21085 0.94787 0.84284 0.99299 1.45760 1.10436 1.10945 1.70739 1.21190 0.81622 0.91790 0.75074 1.90695 1.57876 1.44070 1.52635 1.20295 0.93825 0.93198 1.03267 1.19507 0.94085 1.11911 0.93448 1.20738 0.93064 0.99501 0.97603 1.20715 0.95818 1.13318 0.96615 1.20943 0.97991 1.00175 0.94390 1.21280 0.93967 1.07687 0.98669 1.17757 0.92769 0.88134 0.91944 1.19717 0.99615 1.26169 1.05852 0.89852 1.26784 0.96552 0.92739 1.02358 1.69945 1.26748 1.17401 1.31823 0.85318 0.78469 0.79972 0.76717 1.19611 1.17002 1.19434 0.92196 0.92533 0.92216 0.92483 0.92059 0.93164 0.90603 0.89819 0.92026 0.91463 0.91439 0.92701 0.91996 0.89308 0.94215 0.93126 0.74883 0.86599 0.88110 0.86478 0.86748 0.87822 0.88768 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.67 5.86 30.59 0.18 -1.49 16 3 C 0.05 0.78 4.83 86.30 0.42 1.20 16 4 N -0.55 -10.62 4.68 -896.21 -4.19 -14.81 16 5 C 0.04 0.76 5.69 86.30 0.49 1.25 16 6 C -0.19 -2.76 9.27 71.98 0.67 -2.09 16 7 C 0.05 1.05 4.84 86.30 0.42 1.47 16 8 C 0.13 3.68 5.60 86.38 0.48 4.16 16 9 N -0.72 -20.90 5.56 -463.06 -2.57 -23.47 16 10 C 0.52 20.78 7.82 87.66 0.69 21.46 16 11 O -0.58 -30.48 16.03 -3.01 -0.05 -30.53 16 12 C -0.07 -2.50 5.35 29.10 0.16 -2.35 16 13 C -0.19 -9.11 4.43 -19.41 -0.09 -9.19 16 14 C -0.09 -4.14 9.66 22.22 0.21 -3.93 16 15 C -0.25 -11.40 10.05 22.46 0.23 -11.18 16 16 C -0.12 -5.89 10.02 22.22 0.22 -5.66 16 17 C -0.20 -11.10 8.68 22.73 0.20 -10.91 16 18 C 0.10 5.35 5.55 -21.29 -0.12 5.23 16 19 C -0.48 -26.35 8.45 23.46 0.20 -26.15 16 20 H 0.08 4.19 6.37 -2.91 -0.02 4.17 16 21 C 0.03 1.56 5.15 85.26 0.44 2.00 16 22 N -0.83 -47.39 11.02 21.83 0.24 -47.15 16 23 Si 0.97 40.03 29.59 68.60 2.03 42.06 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 26 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.85 6.86 -2.39 -0.02 0.83 16 32 H 0.05 0.65 5.92 -2.39 -0.01 0.63 16 33 H 0.08 1.08 7.84 -2.38 -0.02 1.06 16 34 H 0.08 1.39 6.63 -2.38 -0.02 1.38 16 35 H 0.06 1.37 6.43 -2.39 -0.02 1.35 16 36 H 0.07 0.85 6.25 -2.38 -0.01 0.84 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.87 6.31 -2.39 -0.02 0.85 16 39 H 0.06 0.99 6.03 -2.39 -0.01 0.98 16 40 H 0.09 1.56 7.87 -2.39 -0.02 1.54 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 1.55 6.54 -2.39 -0.02 1.54 16 43 H 0.41 8.33 8.47 -92.71 -0.79 7.55 16 44 H 0.12 3.33 8.05 -2.39 -0.02 3.31 16 45 H 0.10 3.61 6.49 -2.39 -0.02 3.59 16 46 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 47 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 48 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 49 H 0.09 5.58 6.27 -2.91 -0.02 5.56 16 50 H 0.28 14.67 8.30 -92.71 -0.77 13.90 16 Total: -1.00 -73.47 393.02 1.11 -72.36 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: 0.15 Total: 38.63 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 5.50 Total: -37.08 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -6.52 Total: -85.44 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.05 Total: -30.53 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -73.47 1.11 -72.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777404398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.219 kcal (2) G-P(sol) polarization free energy of solvation -73.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds