Wall clock time and date at job start Tue Mar 31 2020 13:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 108.82487 * 2 1 4 4 C 1.54309 * 108.85249 * 241.59477 * 2 1 3 5 5 C 1.54327 * 111.72153 * 198.11514 * 4 2 1 6 6 N 1.44257 * 112.53984 * 318.91042 * 5 4 2 7 7 C 1.46897 * 110.95948 * 217.58310 * 6 5 4 8 8 C 1.53003 * 109.46956 * 303.56271 * 7 6 5 9 9 H 1.09000 * 109.47162 * 60.00225 * 8 7 6 10 10 O 1.42897 * 109.47322 * 300.00564 * 8 7 6 11 11 C 1.50697 * 109.47239 * 179.97438 * 8 7 6 12 12 H 1.08000 * 119.99831 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00194 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99452 * 0.02562 * 13 11 8 15 15 Si 1.86793 * 120.00048 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47041 * 90.00462 * 15 13 11 17 17 H 1.48498 * 109.47211 * 210.00253 * 15 13 11 18 18 H 1.48500 * 109.47502 * 330.00459 * 15 13 11 19 19 C 1.48090 * 109.87598 * 94.44722 * 6 5 4 20 20 C 1.46094 * 112.07614 * 279.54926 * 19 6 5 21 21 N 1.44184 * 108.85433 * 118.50291 * 2 1 3 22 22 C 1.46902 * 111.00105 * 338.33739 * 21 2 1 23 23 C 1.50702 * 109.47019 * 173.06452 * 22 21 2 24 24 C 1.38235 * 119.99637 * 275.86052 * 23 22 21 25 25 C 1.38237 * 119.99835 * 179.78960 * 24 23 22 26 26 C 1.38242 * 119.99738 * 0.43716 * 25 24 23 27 27 C 1.38235 * 120.00069 * 359.81411 * 26 25 24 28 28 C 1.38231 * 119.99708 * 96.12880 * 23 22 21 29 29 H 1.08996 * 109.46971 * 306.34181 * 1 2 3 30 30 H 1.08994 * 109.47415 * 66.34644 * 1 2 3 31 31 H 1.09005 * 109.46584 * 186.34380 * 1 2 3 32 32 H 1.08996 * 109.03424 * 318.69140 * 4 2 1 33 33 H 1.09004 * 109.03242 * 77.61337 * 4 2 1 34 34 H 1.08995 * 108.85569 * 79.72299 * 5 4 2 35 35 H 1.09001 * 108.85179 * 198.21272 * 5 4 2 36 36 H 1.08997 * 109.47296 * 63.56387 * 7 6 5 37 37 H 1.08999 * 109.47173 * 183.56914 * 7 6 5 38 38 H 0.96707 * 113.99463 * 299.99681 * 10 8 7 39 39 H 0.97001 * 119.99349 * 179.97438 * 14 13 11 40 40 H 1.08992 * 108.94563 * 158.90399 * 19 6 5 41 41 H 1.09005 * 108.94581 * 40.19060 * 19 6 5 42 42 H 1.09000 * 108.93653 * 181.41903 * 20 19 6 43 43 H 1.09001 * 108.94198 * 300.03598 * 20 19 6 44 44 H 1.09001 * 109.46809 * 293.06532 * 22 21 2 45 45 H 1.09004 * 109.46893 * 53.06485 * 22 21 2 46 46 H 1.08005 * 120.00375 * 359.97438 * 24 23 22 47 47 H 1.07993 * 120.00451 * 180.27246 * 25 24 23 48 48 H 1.08001 * 119.99988 * 179.83215 * 26 25 24 49 49 H 1.08001 * 120.00412 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.00393 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0287 -0.6947 -1.2845 5 6 3.5028 -1.1345 -1.1606 6 7 4.3214 -0.1455 -0.5028 7 6 5.6554 -0.0767 -1.1141 8 6 6.3060 -1.4610 -1.0757 9 1 5.6885 -2.1681 -1.6296 10 8 6.4253 -1.8938 0.2809 11 6 7.6742 -1.3906 -1.7034 12 1 8.0431 -0.4523 -2.0906 13 6 8.4556 -2.5239 -1.7824 14 7 8.0065 -3.6663 -1.3105 15 14 10.1518 -2.4365 -2.5598 16 1 11.1586 -2.1163 -1.5163 17 1 10.4803 -3.7453 -3.1796 18 1 10.1650 -1.3783 -3.6016 19 6 4.4153 -0.4506 0.9433 20 6 3.2360 0.0015 1.6775 21 7 1.9960 -0.6511 1.1991 22 6 0.9599 -0.6406 2.2405 23 6 1.4158 -1.4730 3.4111 24 6 1.2277 -2.8424 3.4002 25 6 1.6498 -3.6066 4.4720 26 6 2.2519 -3.0002 5.5587 27 6 2.4353 -1.6301 5.5718 28 6 2.0171 -0.8664 4.4980 29 1 -0.3633 0.6090 0.8278 30 1 -0.3634 0.4123 -0.9413 31 1 -0.3633 -1.0214 0.1136 32 1 1.4111 -1.5720 -1.4768 33 1 1.9344 -0.0034 -2.1220 34 1 3.5466 -2.0635 -0.5924 35 1 3.9020 -1.3135 -2.1589 36 1 5.5643 0.2534 -2.1489 37 1 6.2729 0.6304 -0.5602 38 1 6.9629 -1.3104 0.8339 39 1 8.5561 -4.4637 -1.3664 40 1 5.2973 0.0420 1.3523 41 1 4.5206 -1.5279 1.0715 42 1 3.3696 -0.2250 2.7353 43 1 3.1369 1.0804 1.5581 44 1 0.7857 0.3840 2.5691 45 1 0.0358 -1.0552 1.8378 46 1 0.7537 -3.3158 2.5530 47 1 1.5069 -4.6770 4.4617 48 1 2.5792 -3.5968 6.3973 49 1 2.9053 -1.1562 6.4209 50 1 2.1605 0.2039 4.5082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809574327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:35 Heat of formation + Delta-G solvation = 0.561620 kcal Electronic energy + Delta-G solvation = -28227.758392 eV Core-core repulsion = 24641.270210 eV Total energy + Delta-G solvation = -3586.488183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.00796 -38.74492 -37.04169 -34.43391 -33.17403 -32.08872 -31.61349 -30.85073 -29.55873 -28.16583 -27.21937 -25.26903 -23.90617 -22.98793 -22.52049 -21.28231 -21.09046 -19.65278 -18.85983 -16.98890 -16.81691 -15.97125 -15.66525 -15.49079 -14.89586 -14.81910 -14.65465 -14.43304 -14.20104 -13.97227 -13.42850 -13.32312 -13.22485 -12.78272 -12.69608 -12.52662 -12.32084 -12.22217 -12.05280 -11.67350 -11.18836 -11.06777 -11.03474 -10.91698 -10.89403 -10.79949 -10.69494 -10.51324 -10.33012 -10.20564 -9.92634 -9.91752 -9.31100 -8.85443 -8.70219 -8.56841 -8.52600 -7.99784 -7.10747 -5.97818 -4.17335 1.36874 1.44829 3.27695 3.34991 3.37714 3.72676 4.23746 4.39451 4.69302 4.79303 4.85327 5.00733 5.03414 5.11166 5.14088 5.27722 5.28067 5.43268 5.49742 5.54898 5.63574 5.65991 5.68911 5.81762 5.89516 5.91275 6.00930 6.02052 6.05051 6.07124 6.12614 6.19620 6.27869 6.40825 6.45197 6.48103 6.54083 6.54503 6.62184 6.66876 6.77780 6.91375 6.96730 7.03204 7.32465 7.43811 7.63519 7.76711 7.89981 7.99436 8.24274 8.85914 9.37612 9.59259 11.04711 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.003738 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.625921 B = 7488.444358 C = 8769.916185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 H 0.050 0.950 4 C -0.095 4.095 5 C 0.066 3.934 6 N -0.533 5.533 7 C 0.028 3.972 8 C 0.200 3.800 9 H 0.056 0.944 10 O -0.560 6.560 11 C -0.572 4.572 12 H 0.055 0.945 13 C 0.080 3.920 14 N -0.859 5.859 15 Si 0.887 3.113 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.059 3.941 20 C 0.059 3.941 21 N -0.519 5.519 22 C 0.088 3.912 23 C -0.074 4.074 24 C -0.095 4.095 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.116 4.116 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.341 0.659 39 H 0.259 0.741 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.036 0.964 45 H 0.090 0.910 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.135 5.702 9.985 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 H 0.068 0.932 4 C -0.134 4.134 5 C -0.063 4.063 6 N -0.256 5.256 7 C -0.099 4.099 8 C 0.141 3.859 9 H 0.074 0.926 10 O -0.363 6.363 11 C -0.611 4.611 12 H 0.073 0.927 13 C -0.126 4.126 14 N -0.495 5.495 15 Si 0.714 3.286 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.068 4.068 20 C -0.068 4.068 21 N -0.243 5.243 22 C -0.039 4.039 23 C -0.075 4.075 24 C -0.114 4.114 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.135 4.135 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.185 0.815 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.108 0.892 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.623 5.006 9.586 19.832 hybrid contribution 1.766 0.468 -0.101 1.830 sum -14.857 5.474 9.485 18.457 Atomic orbital electron populations 1.22325 0.96301 1.01850 1.01581 1.21299 0.92843 0.96692 0.90699 0.93180 1.22043 0.96484 0.99415 0.95457 1.21659 0.91987 0.94053 0.98635 1.61863 1.13428 1.47636 1.02642 1.23061 0.87972 1.00242 0.98651 1.20004 0.94892 0.89788 0.81181 0.92628 1.86607 1.72608 1.54585 1.22488 1.21662 1.02189 0.95383 1.41866 0.92691 1.25040 0.97966 0.95358 0.94257 1.70082 1.36660 0.99424 1.43326 0.86708 0.84812 0.77436 0.79619 1.20590 1.21177 1.19848 1.21102 0.95234 1.02123 0.88379 1.21325 0.90501 0.95925 0.99075 1.61617 1.03958 1.55440 1.03319 1.21277 0.95652 0.96940 0.89991 1.19817 0.98452 0.94323 0.94858 1.21000 0.99373 0.93218 0.97771 1.21154 0.98905 0.99766 0.94042 1.21116 0.99586 0.94889 0.98559 1.21078 1.00315 0.94163 0.98475 1.21040 0.98993 0.99606 0.93852 0.92871 0.92411 0.91879 0.92438 0.92536 0.93391 0.92602 0.91561 0.92159 0.81518 0.93086 0.92003 0.90989 0.91007 0.95006 0.94558 0.89223 0.86075 0.86260 0.86428 0.86378 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 7.65 37.16 0.28 -1.39 16 2 C 0.09 1.23 2.48 -68.48 -0.17 1.06 16 3 H 0.05 0.72 7.16 -51.93 -0.37 0.35 16 4 C -0.09 -1.37 5.78 -25.35 -0.15 -1.52 16 5 C 0.07 1.20 4.08 -4.54 -0.02 1.18 16 6 N -0.53 -9.73 4.48 -239.01 -1.07 -10.80 16 7 C 0.03 0.59 4.87 -3.82 -0.02 0.57 16 8 C 0.20 4.97 2.54 -27.88 -0.07 4.90 16 9 H 0.06 1.55 6.72 -51.93 -0.35 1.20 16 10 O -0.56 -14.00 9.51 -35.23 -0.34 -14.34 16 11 C -0.57 -15.68 8.76 -34.44 -0.30 -15.98 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 14 N -0.86 -25.56 12.84 55.43 0.71 -24.84 16 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.06 1.04 3.70 -6.44 -0.02 1.02 16 20 C 0.06 0.87 5.02 -6.46 -0.03 0.84 16 21 N -0.52 -7.11 4.26 -232.40 -0.99 -8.10 16 22 C 0.09 1.01 3.85 -4.97 -0.02 0.99 16 23 C -0.07 -0.89 4.76 -104.62 -0.50 -1.39 16 24 C -0.10 -1.16 9.73 -39.58 -0.38 -1.54 16 25 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 27 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 28 C -0.12 -1.33 7.94 -39.58 -0.31 -1.64 16 29 H 0.05 0.49 6.79 -51.93 -0.35 0.14 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.06 0.63 7.08 -51.93 -0.37 0.27 16 32 H 0.06 0.79 7.98 -51.93 -0.41 0.37 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.99 7.16 -51.93 -0.37 0.62 16 35 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 36 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 37 H 0.06 1.22 7.91 -51.93 -0.41 0.81 16 38 H 0.34 7.77 8.55 45.56 0.39 8.16 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.06 1.08 7.18 -51.93 -0.37 0.71 16 41 H 0.07 1.50 5.79 -51.93 -0.30 1.20 16 42 H 0.07 1.02 5.23 -51.93 -0.27 0.75 16 43 H 0.03 0.47 7.37 -51.93 -0.38 0.08 16 44 H 0.04 0.39 7.70 -51.93 -0.40 -0.01 16 45 H 0.09 0.93 5.59 -51.93 -0.29 0.64 16 46 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 47 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 49 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 50 H 0.12 1.17 7.93 -52.49 -0.42 0.76 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -30.14 374.35 -11.61 -41.74 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.54 Total: 10.46 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.00 Total: -16.03 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: -1.35 Total: -43.75 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.34 Total: -14.34 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.14 -11.61 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.305 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds