Wall clock time and date at job start Tue Mar 31 2020 13:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 108.82487 * 2 1 4 4 C 1.54309 * 108.85249 * 241.59477 * 2 1 3 5 5 C 1.54327 * 111.72153 * 198.11514 * 4 2 1 6 6 N 1.44257 * 112.53984 * 318.91042 * 5 4 2 7 7 C 1.46897 * 110.95948 * 217.58310 * 6 5 4 8 8 C 1.53003 * 109.46956 * 303.56271 * 7 6 5 9 9 H 1.09000 * 109.47162 * 60.00225 * 8 7 6 10 10 O 1.42897 * 109.47322 * 300.00564 * 8 7 6 11 11 C 1.50697 * 109.47239 * 179.97438 * 8 7 6 12 12 H 1.08000 * 119.99831 * 0.02562 * 11 8 7 13 13 C 1.37881 * 120.00194 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99452 * 0.02562 * 13 11 8 15 15 Si 1.86793 * 120.00048 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.47041 * 90.00462 * 15 13 11 17 17 H 1.48498 * 109.47211 * 210.00253 * 15 13 11 18 18 H 1.48500 * 109.47502 * 330.00459 * 15 13 11 19 19 C 1.48090 * 109.87598 * 94.44722 * 6 5 4 20 20 C 1.46094 * 112.07614 * 279.54926 * 19 6 5 21 21 N 1.44184 * 108.85433 * 118.50291 * 2 1 3 22 22 C 1.46902 * 111.00105 * 338.33739 * 21 2 1 23 23 C 1.50702 * 109.47019 * 173.06452 * 22 21 2 24 24 C 1.38235 * 119.99637 * 275.86052 * 23 22 21 25 25 C 1.38237 * 119.99835 * 179.78960 * 24 23 22 26 26 C 1.38242 * 119.99738 * 0.43716 * 25 24 23 27 27 C 1.38235 * 120.00069 * 359.81411 * 26 25 24 28 28 C 1.38231 * 119.99708 * 96.12880 * 23 22 21 29 29 H 1.08996 * 109.46971 * 306.34181 * 1 2 3 30 30 H 1.08994 * 109.47415 * 66.34644 * 1 2 3 31 31 H 1.09005 * 109.46584 * 186.34380 * 1 2 3 32 32 H 1.08996 * 109.03424 * 318.69140 * 4 2 1 33 33 H 1.09004 * 109.03242 * 77.61337 * 4 2 1 34 34 H 1.08995 * 108.85569 * 79.72299 * 5 4 2 35 35 H 1.09001 * 108.85179 * 198.21272 * 5 4 2 36 36 H 1.08997 * 109.47296 * 63.56387 * 7 6 5 37 37 H 1.08999 * 109.47173 * 183.56914 * 7 6 5 38 38 H 0.96707 * 113.99463 * 299.99681 * 10 8 7 39 39 H 0.97001 * 119.99349 * 179.97438 * 14 13 11 40 40 H 1.08992 * 108.94563 * 158.90399 * 19 6 5 41 41 H 1.09005 * 108.94581 * 40.19060 * 19 6 5 42 42 H 1.09000 * 108.93653 * 181.41903 * 20 19 6 43 43 H 1.09001 * 108.94198 * 300.03598 * 20 19 6 44 44 H 1.09001 * 109.46809 * 293.06532 * 22 21 2 45 45 H 1.09004 * 109.46893 * 53.06485 * 22 21 2 46 46 H 1.08005 * 120.00375 * 359.97438 * 24 23 22 47 47 H 1.07993 * 120.00451 * 180.27246 * 25 24 23 48 48 H 1.08001 * 119.99988 * 179.83215 * 26 25 24 49 49 H 1.08001 * 120.00412 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.00393 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0287 -0.6947 -1.2845 5 6 3.5028 -1.1345 -1.1606 6 7 4.3214 -0.1455 -0.5028 7 6 5.6554 -0.0767 -1.1141 8 6 6.3060 -1.4610 -1.0757 9 1 5.6885 -2.1681 -1.6296 10 8 6.4253 -1.8938 0.2809 11 6 7.6742 -1.3906 -1.7034 12 1 8.0431 -0.4523 -2.0906 13 6 8.4556 -2.5239 -1.7824 14 7 8.0065 -3.6663 -1.3105 15 14 10.1518 -2.4365 -2.5598 16 1 11.1586 -2.1163 -1.5163 17 1 10.4803 -3.7453 -3.1796 18 1 10.1650 -1.3783 -3.6016 19 6 4.4153 -0.4506 0.9433 20 6 3.2360 0.0015 1.6775 21 7 1.9960 -0.6511 1.1991 22 6 0.9599 -0.6406 2.2405 23 6 1.4158 -1.4730 3.4111 24 6 1.2277 -2.8424 3.4002 25 6 1.6498 -3.6066 4.4720 26 6 2.2519 -3.0002 5.5587 27 6 2.4353 -1.6301 5.5718 28 6 2.0171 -0.8664 4.4980 29 1 -0.3633 0.6090 0.8278 30 1 -0.3634 0.4123 -0.9413 31 1 -0.3633 -1.0214 0.1136 32 1 1.4111 -1.5720 -1.4768 33 1 1.9344 -0.0034 -2.1220 34 1 3.5466 -2.0635 -0.5924 35 1 3.9020 -1.3135 -2.1589 36 1 5.5643 0.2534 -2.1489 37 1 6.2729 0.6304 -0.5602 38 1 6.9629 -1.3104 0.8339 39 1 8.5561 -4.4637 -1.3664 40 1 5.2973 0.0420 1.3523 41 1 4.5206 -1.5279 1.0715 42 1 3.3696 -0.2250 2.7353 43 1 3.1369 1.0804 1.5581 44 1 0.7857 0.3840 2.5691 45 1 0.0358 -1.0552 1.8378 46 1 0.7537 -3.3158 2.5530 47 1 1.5069 -4.6770 4.4617 48 1 2.5792 -3.5968 6.3973 49 1 2.9053 -1.1562 6.4209 50 1 2.1605 0.2039 4.5082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809574327.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:35 Heat of formation + Delta-G solvation = -19.519286 kcal Electronic energy + Delta-G solvation = -28228.629166 eV Core-core repulsion = 24641.270210 eV Total energy + Delta-G solvation = -3587.358956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12132 -39.87364 -38.48895 -36.16685 -34.38680 -34.14360 -32.72148 -31.70649 -31.06201 -29.30955 -28.81563 -26.59949 -25.48843 -24.24298 -23.48457 -22.79572 -22.21575 -20.94667 -20.13618 -19.07195 -17.71787 -17.10616 -16.92215 -16.68578 -16.61638 -16.23225 -15.95079 -15.86127 -15.66453 -15.46949 -14.95519 -14.60888 -14.29922 -14.17288 -13.79344 -13.59747 -13.45903 -13.30348 -13.27651 -12.95303 -12.86935 -12.82212 -12.66654 -12.36560 -12.11221 -12.05006 -11.92219 -11.82270 -11.68232 -11.59915 -11.41951 -11.27902 -11.22031 -10.72560 -10.51287 -9.72588 -9.58432 -9.05641 -8.84768 -8.11186 -6.40476 0.49673 0.57816 1.38221 1.38834 1.49742 2.37455 2.80494 3.10774 3.19151 3.24194 3.89450 3.99041 4.02820 4.03974 4.20634 4.22297 4.32661 4.33038 4.35877 4.39814 4.45019 4.53740 4.56917 4.61952 4.68587 4.71059 4.79730 4.83709 4.84551 4.93530 4.97311 5.08221 5.10774 5.18424 5.20514 5.22236 5.29075 5.32303 5.33690 5.45357 5.59114 5.62491 5.68864 5.69398 5.78160 5.99135 6.18550 6.23795 6.34140 6.36181 6.46929 6.73486 7.31612 7.51440 8.89395 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.003738 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.625921 B = 7488.444358 C = 8769.916185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.095 3.905 3 H 0.043 0.957 4 C -0.089 4.089 5 C 0.073 3.927 6 N -0.519 5.519 7 C 0.043 3.957 8 C 0.206 3.794 9 H 0.016 0.984 10 O -0.570 6.570 11 C -0.587 4.587 12 H 0.060 0.940 13 C 0.026 3.974 14 N -0.901 5.901 15 Si 0.958 3.042 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.264 1.264 19 C 0.070 3.930 20 C 0.066 3.934 21 N -0.534 5.534 22 C 0.093 3.907 23 C -0.087 4.087 24 C -0.113 4.113 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.125 4.125 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.013 0.987 35 H 0.035 0.965 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.350 0.650 39 H 0.259 0.741 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.101 0.899 46 H 0.121 0.879 47 H 0.131 0.869 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.707 7.379 10.546 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 H 0.061 0.939 4 C -0.128 4.128 5 C -0.056 4.056 6 N -0.241 5.241 7 C -0.086 4.086 8 C 0.147 3.853 9 H 0.034 0.966 10 O -0.374 6.374 11 C -0.625 4.625 12 H 0.078 0.922 13 C -0.176 4.176 14 N -0.538 5.538 15 Si 0.783 3.217 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.188 1.188 19 C -0.058 4.058 20 C -0.061 4.061 21 N -0.259 5.259 22 C -0.033 4.033 23 C -0.087 4.087 24 C -0.132 4.132 25 C -0.152 4.152 26 C -0.150 4.150 27 C -0.147 4.147 28 C -0.143 4.143 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.032 0.968 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.195 0.805 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.120 0.880 46 H 0.139 0.861 47 H 0.149 0.851 48 H 0.154 0.846 49 H 0.157 0.843 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.211 6.702 10.152 21.076 hybrid contribution 1.937 -0.112 -0.241 1.955 sum -15.274 6.590 9.910 19.363 Atomic orbital electron populations 1.22242 0.93657 1.02454 1.02875 1.21266 0.94943 0.95655 0.89569 0.93906 1.22017 0.93455 1.00200 0.97142 1.21612 0.94501 0.92817 0.96693 1.62021 1.11842 1.47190 1.03093 1.22818 0.89048 0.97552 0.99158 1.19826 0.93814 0.91079 0.80593 0.96590 1.86581 1.72887 1.55345 1.22607 1.22082 1.03194 0.95582 1.41654 0.92205 1.25899 1.02101 0.94893 0.94704 1.70232 1.38339 1.00196 1.45037 0.85586 0.79762 0.77516 0.78874 1.19793 1.21079 1.18843 1.21015 0.97053 0.99726 0.87991 1.21146 0.89948 0.96227 0.98804 1.61516 1.04357 1.55680 1.04319 1.21303 0.95183 0.97657 0.89151 1.19972 0.98940 0.94390 0.95437 1.21172 1.00084 0.93737 0.98213 1.21416 0.99031 1.00584 0.94198 1.21431 0.99229 0.95396 0.98972 1.21406 0.99984 0.94291 0.99044 1.21270 0.98780 1.00441 0.93814 0.91401 0.91295 0.91642 0.91719 0.91349 0.96834 0.94632 0.91526 0.91212 0.80515 0.93165 0.91997 0.94751 0.90326 0.94158 0.93219 0.88049 0.86090 0.85088 0.84564 0.84346 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 7.65 71.98 0.55 -2.19 16 2 C 0.09 2.32 2.48 45.87 0.11 2.44 16 3 H 0.04 1.13 7.16 -2.39 -0.02 1.12 16 4 C -0.09 -2.52 5.78 31.49 0.18 -2.34 16 5 C 0.07 2.74 4.08 87.25 0.36 3.10 16 6 N -0.52 -19.13 4.48 -910.09 -4.08 -23.21 16 7 C 0.04 1.78 4.87 86.30 0.42 2.20 16 8 C 0.21 10.57 2.54 29.85 0.08 10.65 16 9 H 0.02 0.96 6.72 -2.39 -0.02 0.94 16 10 O -0.57 -29.56 9.51 -148.98 -1.42 -30.98 16 11 C -0.59 -32.53 8.76 25.60 0.22 -32.30 16 12 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 13 C 0.03 1.49 5.40 84.66 0.46 1.95 16 14 N -0.90 -54.90 12.84 21.45 0.28 -54.63 16 15 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 C 0.07 2.48 3.70 83.95 0.31 2.79 16 20 C 0.07 1.89 5.02 83.96 0.42 2.31 16 21 N -0.53 -14.08 4.26 -889.19 -3.79 -17.87 16 22 C 0.09 1.97 3.85 85.56 0.33 2.29 16 23 C -0.09 -2.01 4.76 -19.87 -0.09 -2.10 16 24 C -0.11 -2.74 9.73 22.27 0.22 -2.52 16 25 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 26 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 27 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 28 C -0.12 -2.65 7.94 22.27 0.18 -2.48 16 29 H 0.07 1.03 6.79 -2.39 -0.02 1.01 16 30 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.06 1.14 7.08 -2.38 -0.02 1.13 16 32 H 0.06 1.73 7.98 -2.39 -0.02 1.71 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 35 H 0.04 1.44 6.91 -2.39 -0.02 1.43 16 36 H 0.07 2.76 8.12 -2.39 -0.02 2.75 16 37 H 0.07 2.78 7.91 -2.39 -0.02 2.76 16 38 H 0.35 16.35 8.55 -74.05 -0.63 15.72 16 39 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.06 2.16 7.18 -2.39 -0.02 2.14 16 41 H 0.03 1.49 5.79 -2.38 -0.01 1.48 16 42 H 0.08 2.14 5.23 -2.39 -0.01 2.13 16 43 H 0.04 1.10 7.37 -2.39 -0.02 1.08 16 44 H 0.05 0.93 7.70 -2.39 -0.02 0.91 16 45 H 0.10 1.89 5.59 -2.38 -0.01 1.88 16 46 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 47 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 48 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 49 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 50 H 0.13 2.34 7.93 -2.91 -0.02 2.31 16 Total: -1.00 -66.07 374.35 -2.28 -68.36 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.29 Total: 36.36 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 4.41 Total: -23.95 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -7.59 Total: -95.70 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.42 Total: -30.98 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -66.07 -2.28 -68.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809574327.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.836 kcal (2) G-P(sol) polarization free energy of solvation -66.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds