Wall clock time and date at job start Tue Mar 31 2020 13:20:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.50270 * 2 1
4 4 C 1.53114 * 109.50418 * 239.92059 * 2 1 3
5 5 C 1.53126 * 109.16239 * 182.36855 * 4 2 1
6 6 H 1.09006 * 109.49902 * 297.71480 * 5 4 2
7 7 O 1.42892 * 109.50672 * 177.63553 * 5 4 2
8 8 C 1.53037 * 109.27880 * 57.65311 * 5 4 2
9 9 N 1.46850 * 109.52028 * 300.82273 * 8 5 4
10 10 C 1.46900 * 110.99740 * 185.83738 * 9 8 5
11 11 C 1.50703 * 109.47282 * 293.95570 * 10 9 8
12 12 C 1.38283 * 119.92568 * 269.72570 * 11 10 9
13 13 C 1.38105 * 120.07594 * 179.72841 * 12 11 10
14 14 C 1.38910 * 119.92010 * 0.54172 * 13 12 11
15 15 N 1.39674 * 120.07468 * 179.75070 * 14 13 12
16 16 C 1.46492 * 120.00431 * 179.97438 * 15 14 13
17 17 C 1.46505 * 119.99752 * 359.97438 * 15 14 13
18 18 C 1.50699 * 109.47104 * 89.99928 * 17 15 14
19 19 H 1.07998 * 120.00256 * 0.02562 * 18 17 15
20 20 C 1.37879 * 119.99794 * 180.02562 * 18 17 15
21 21 N 1.31516 * 120.00278 * 359.97438 * 20 18 17
22 22 Si 1.86795 * 119.99979 * 180.02562 * 20 18 17
23 23 H 1.48501 * 109.47096 * 359.97438 * 22 20 18
24 24 H 1.48498 * 109.47575 * 119.99971 * 22 20 18
25 25 H 1.48504 * 109.46868 * 240.00032 * 22 20 18
26 26 C 1.38907 * 119.85459 * 359.73517 * 14 13 12
27 27 C 1.38110 * 119.92552 * 359.97438 * 26 14 13
28 28 C 1.46929 * 111.22205 * 61.74456 * 9 8 5
29 29 H 1.09003 * 109.47116 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47415 * 300.00340 * 1 2 3
31 31 H 1.09000 * 109.47041 * 60.00201 * 1 2 3
32 32 H 1.09006 * 109.52545 * 302.27190 * 4 2 1
33 33 H 1.08997 * 109.52864 * 62.39913 * 4 2 1
34 34 H 0.96693 * 114.00772 * 179.97438 * 7 5 4
35 35 H 1.08997 * 109.46525 * 60.83781 * 8 5 4
36 36 H 1.08995 * 109.46235 * 180.81317 * 8 5 4
37 37 H 1.09004 * 109.46832 * 53.95757 * 10 9 8
38 38 H 1.08997 * 109.47223 * 173.95226 * 10 9 8
39 39 H 1.08003 * 119.95924 * 359.97438 * 12 11 10
40 40 H 1.07995 * 120.03974 * 180.27318 * 13 12 11
41 41 H 1.09000 * 109.47050 * 89.99996 * 16 15 14
42 42 H 1.09000 * 109.47333 * 209.99890 * 16 15 14
43 43 H 1.08997 * 109.47101 * 329.99847 * 16 15 14
44 44 H 1.08999 * 109.47245 * 209.99772 * 17 15 14
45 45 H 1.09004 * 109.47270 * 329.99587 * 17 15 14
46 46 H 0.96996 * 120.00565 * 180.02562 * 21 20 18
47 47 H 1.08004 * 120.04128 * 179.97438 * 26 14 13
48 48 H 1.08000 * 119.96596 * 180.02562 * 27 26 14
49 49 H 1.08994 * 109.51866 * 178.25481 * 28 9 8
50 50 H 1.09007 * 109.45009 * 58.26164 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0275 0.0000
4 6 2.0412 -0.7234 -1.2489
5 6 3.5713 -0.7707 -1.2114
6 1 3.9673 0.2447 -1.2304
7 8 4.0543 -1.4925 -2.3461
8 6 4.0238 -1.4717 0.0715
9 7 3.5100 -0.7411 1.2372
10 6 4.0387 -1.3047 2.4866
11 6 3.5033 -2.7010 2.6739
12 6 2.3202 -2.8996 3.3616
13 6 1.8238 -4.1773 3.5303
14 6 2.5204 -5.2645 3.0179
15 7 2.0240 -6.5585 3.1911
16 6 2.7595 -7.7038 2.6496
17 6 0.7677 -6.7704 3.9144
18 6 -0.3840 -6.7297 2.9434
19 1 -0.1988 -6.5631 1.8925
20 6 -1.6743 -6.9051 3.3966
21 7 -1.9000 -7.1085 4.6762
22 14 -3.1019 -6.8553 2.1929
23 1 -2.5851 -6.6143 0.8218
24 1 -3.8253 -8.1517 2.2289
25 1 -4.0303 -5.7597 2.5712
26 6 3.7115 -5.0618 2.3325
27 6 4.1991 -3.7809 2.1623
28 6 2.0409 -0.7230 1.2483
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 1.6458 -1.7390 -1.2692
33 1 1.7142 -0.1874 -2.1399
34 1 5.0178 -1.5618 -2.3873
35 1 3.6389 -2.4914 0.0834
36 1 5.1129 -1.4942 0.1083
37 1 5.1272 -1.3363 2.4389
38 1 3.7297 -0.6815 3.3257
39 1 1.7817 -2.0543 3.7639
40 1 0.8975 -4.3314 4.0637
41 1 3.4634 -8.0699 3.3970
42 1 2.0580 -8.4973 2.3919
43 1 3.3044 -7.3966 1.7570
44 1 0.7922 -7.7417 4.4084
45 1 0.6415 -5.9862 4.6609
46 1 -2.8076 -7.2323 4.9950
47 1 4.2557 -5.9049 1.9332
48 1 5.1249 -3.6226 1.6291
49 1 1.6899 -0.2019 2.1390
50 1 1.6653 -1.7462 1.2547
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000825311530.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:20:44
Heat of formation + Delta-G solvation = -24.969502 kcal
Electronic energy + Delta-G solvation = -27724.906381 eV
Core-core repulsion = 24137.311086 eV
Total energy + Delta-G solvation = -3587.595295 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-39.99155 -38.68045 -36.64454 -35.63657 -34.08811 -32.70399 -30.78576 -30.44505
-29.39445 -27.86098 -26.75219 -26.42464 -24.66726 -23.10461 -22.11194 -21.76440
-21.19614 -19.80853 -19.54202 -17.21803 -16.70366 -16.49381 -15.80899 -15.63097
-15.09928 -14.98892 -14.78458 -14.36220 -14.13413 -13.94026 -13.70198 -13.38746
-13.09524 -13.01108 -12.85675 -12.75980 -12.22464 -12.13669 -11.95077 -11.86966
-11.77737 -11.46663 -11.30550 -11.24648 -11.09847 -10.93752 -10.78648 -10.71931
-10.63202 -10.38609 -10.30633 -9.97553 -9.92846 -9.78790 -8.87689 -8.54972
-8.33336 -8.27012 -6.52231 -6.06399 -4.21703 2.02839 2.14557 3.22236
3.30636 3.35665 3.80858 4.09515 4.20912 4.37450 4.51139 4.72597
4.79994 4.94180 5.01892 5.17532 5.23286 5.24505 5.32428 5.38745
5.48749 5.52193 5.60007 5.64386 5.73621 5.76227 5.77645 5.87674
5.93951 5.94762 5.97802 6.01876 6.02808 6.13130 6.19455 6.22166
6.31245 6.36923 6.39695 6.55827 6.86936 6.95126 6.99579 7.09127
7.15387 7.21782 7.30784 7.53001 7.54729 7.76928 8.10789 8.20997
8.42580 8.87536 9.45469 10.91542
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.011653 B = 0.004002 C = 0.003464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2402.204492 B = 6994.993550 C = 8080.381545
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.084 4.084
3 H 0.076 0.924
4 C -0.109 4.109
5 C 0.108 3.892
6 H 0.060 0.940
7 O -0.568 6.568
8 C 0.022 3.978
9 N -0.527 5.527
10 C 0.108 3.892
11 C -0.212 4.212
12 C -0.061 4.061
13 C -0.187 4.187
14 C 0.243 3.757
15 N -0.614 5.614
16 C 0.098 3.902
17 C 0.249 3.751
18 C -0.531 4.531
19 H 0.059 0.941
20 C 0.062 3.938
21 N -0.894 5.894
22 Si 0.895 3.105
23 H -0.273 1.273
24 H -0.283 1.283
25 H -0.282 1.282
26 C -0.222 4.222
27 C -0.062 4.062
28 C 0.053 3.947
29 H 0.058 0.942
30 H 0.058 0.942
31 H 0.055 0.945
32 H 0.069 0.931
33 H 0.067 0.933
34 H 0.376 0.624
35 H 0.053 0.947
36 H 0.069 0.931
37 H 0.073 0.927
38 H 0.077 0.923
39 H 0.109 0.891
40 H 0.131 0.869
41 H 0.036 0.964
42 H 0.067 0.933
43 H 0.054 0.946
44 H 0.030 0.970
45 H 0.036 0.964
46 H 0.264 0.736
47 H 0.113 0.887
48 H 0.105 0.895
49 H 0.074 0.926
50 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.045 12.449 -7.227 18.769
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.103 4.103
3 H 0.094 0.906
4 C -0.147 4.147
5 C 0.049 3.951
6 H 0.077 0.923
7 O -0.372 6.372
8 C -0.107 4.107
9 N -0.250 5.250
10 C -0.019 4.019
11 C -0.216 4.216
12 C -0.080 4.080
13 C -0.210 4.210
14 C 0.135 3.865
15 N -0.320 5.320
16 C -0.046 4.046
17 C 0.129 3.871
18 C -0.570 4.570
19 H 0.077 0.923
20 C -0.140 4.140
21 N -0.533 5.533
22 Si 0.722 3.278
23 H -0.197 1.197
24 H -0.209 1.209
25 H -0.208 1.208
26 C -0.245 4.245
27 C -0.081 4.081
28 C -0.074 4.074
29 H 0.077 0.923
30 H 0.077 0.923
31 H 0.074 0.926
32 H 0.087 0.913
33 H 0.085 0.915
34 H 0.222 0.778
35 H 0.071 0.929
36 H 0.088 0.912
37 H 0.091 0.909
38 H 0.095 0.905
39 H 0.127 0.873
40 H 0.149 0.851
41 H 0.054 0.946
42 H 0.086 0.914
43 H 0.073 0.927
44 H 0.048 0.952
45 H 0.054 0.946
46 H 0.073 0.927
47 H 0.130 0.870
48 H 0.123 0.877
49 H 0.092 0.908
50 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 11.325 12.618 -7.231 18.433
hybrid contribution -0.605 -1.025 -0.375 1.248
sum 10.721 11.593 -7.606 17.527
Atomic orbital electron populations
1.21779 0.94467 1.02453 1.01743 1.21088 0.95548 0.99810 0.93889
0.90594 1.21600 0.93223 1.01768 0.98090 1.21781 0.95010 0.94092
0.84220 0.92252 1.86535 1.26519 1.78317 1.45828 1.22795 0.99635
0.97408 0.90844 1.62371 1.08455 1.52188 1.02020 1.20967 0.98864
0.90632 0.91444 1.19986 0.98811 0.95663 1.07161 1.20677 0.94648
0.96057 0.96644 1.20888 1.02372 0.91269 1.06462 1.17962 0.91265
0.85732 0.91496 1.47121 1.24878 1.01814 1.58140 1.21477 0.96195
0.89625 0.97312 1.19298 0.78749 0.97386 0.91678 1.21600 0.91097
1.49535 0.94774 0.92264 1.24952 0.98840 0.94945 0.95243 1.69935
1.21223 1.48919 1.13263 0.86486 0.82194 0.77733 0.81361 1.19728
1.20881 1.20783 1.20560 0.98578 0.97147 1.08235 1.20512 0.97995
0.91868 0.97761 1.22243 0.87269 1.00226 0.97702 0.92257 0.92294
0.92579 0.91271 0.91473 0.77768 0.92876 0.91239 0.90887 0.90489
0.87266 0.85082 0.94564 0.91398 0.92720 0.95176 0.94641 0.92663
0.86956 0.87712 0.90764 0.93079
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.55 9.20 37.16 0.34 -1.21 16
2 C -0.08 -0.93 2.88 -90.54 -0.26 -1.20 16
3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
4 C -0.11 -1.30 4.94 -26.61 -0.13 -1.43 16
5 C 0.11 1.21 3.63 -26.65 -0.10 1.11 16
6 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
7 O -0.57 -6.39 13.32 -35.23 -0.47 -6.86 16
8 C 0.02 0.25 4.45 -3.83 -0.02 0.24 16
9 N -0.53 -6.28 4.86 -236.04 -1.15 -7.43 16
10 C 0.11 1.30 5.55 -4.97 -0.03 1.28 16
11 C -0.21 -3.13 4.04 -104.59 -0.42 -3.55 16
12 C -0.06 -1.01 8.02 -39.61 -0.32 -1.32 16
13 C -0.19 -3.73 9.21 -39.38 -0.36 -4.09 16
14 C 0.24 4.87 6.55 -83.79 -0.55 4.33 16
15 N -0.61 -13.10 2.99 -181.00 -0.54 -13.64 16
16 C 0.10 1.72 10.19 59.84 0.61 2.33 16
17 C 0.25 6.20 4.91 -5.19 -0.03 6.17 16
18 C -0.53 -14.43 9.39 -34.44 -0.32 -14.76 16
19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16
20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16
21 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16
22 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16
23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16
24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
26 C -0.22 -3.83 9.21 -39.38 -0.36 -4.19 16
27 C -0.06 -0.94 8.10 -39.61 -0.32 -1.26 16
28 C 0.05 0.67 3.84 -3.79 -0.01 0.65 16
29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16
33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
34 H 0.38 2.58 9.08 45.56 0.41 2.99 16
35 H 0.05 0.76 6.55 -51.93 -0.34 0.42 16
36 H 0.07 0.70 8.06 -51.93 -0.42 0.29 16
37 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16
38 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16
39 H 0.11 1.62 8.03 -52.48 -0.42 1.20 16
40 H 0.13 2.90 6.14 -52.49 -0.32 2.57 16
41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
42 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16
43 H 0.05 0.86 6.20 -51.93 -0.32 0.53 16
44 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16
45 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16
46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
47 H 0.11 1.77 6.14 -52.48 -0.32 1.45 16
48 H 0.10 1.35 8.03 -52.49 -0.42 0.93 16
49 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16
50 H 0.05 0.78 6.48 -51.92 -0.34 0.44 16
LS Contribution 387.40 15.07 5.84 5.84
Total: -1.00 -29.56 387.40 -10.82 -40.38
By element:
Atomic # 1 Polarization: 13.34 SS G_CDS: -7.84 Total: 5.50 kcal
Atomic # 6 Polarization: -12.91 SS G_CDS: -2.38 Total: -15.29 kcal
Atomic # 7 Polarization: -44.85 SS G_CDS: -0.95 Total: -45.80 kcal
Atomic # 8 Polarization: -6.39 SS G_CDS: -0.47 Total: -6.86 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -29.56 -10.82 -40.38 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000825311530.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.407 kcal
(2) G-P(sol) polarization free energy of solvation -29.560 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.970 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds