Wall clock time and date at job start Tue Mar 31 2020 13:20:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.50270 * 2 1
4 4 C 1.53114 * 109.50418 * 239.92059 * 2 1 3
5 5 C 1.53126 * 109.16239 * 182.36855 * 4 2 1
6 6 H 1.09006 * 109.49902 * 297.71480 * 5 4 2
7 7 O 1.42892 * 109.50672 * 177.63553 * 5 4 2
8 8 C 1.53037 * 109.27880 * 57.65311 * 5 4 2
9 9 N 1.46850 * 109.52028 * 300.82273 * 8 5 4
10 10 C 1.46900 * 110.99740 * 185.83738 * 9 8 5
11 11 C 1.50703 * 109.47282 * 293.95570 * 10 9 8
12 12 C 1.38283 * 119.92568 * 269.72570 * 11 10 9
13 13 C 1.38105 * 120.07594 * 179.72841 * 12 11 10
14 14 C 1.38910 * 119.92010 * 0.54172 * 13 12 11
15 15 N 1.39674 * 120.07468 * 179.75070 * 14 13 12
16 16 C 1.46492 * 120.00431 * 179.97438 * 15 14 13
17 17 C 1.46505 * 119.99752 * 359.97438 * 15 14 13
18 18 C 1.50699 * 109.47104 * 89.99928 * 17 15 14
19 19 H 1.07998 * 120.00256 * 0.02562 * 18 17 15
20 20 C 1.37879 * 119.99794 * 180.02562 * 18 17 15
21 21 N 1.31516 * 120.00278 * 359.97438 * 20 18 17
22 22 Si 1.86795 * 119.99979 * 180.02562 * 20 18 17
23 23 H 1.48501 * 109.47096 * 359.97438 * 22 20 18
24 24 H 1.48498 * 109.47575 * 119.99971 * 22 20 18
25 25 H 1.48504 * 109.46868 * 240.00032 * 22 20 18
26 26 C 1.38907 * 119.85459 * 359.73517 * 14 13 12
27 27 C 1.38110 * 119.92552 * 359.97438 * 26 14 13
28 28 C 1.46929 * 111.22205 * 61.74456 * 9 8 5
29 29 H 1.09003 * 109.47116 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47415 * 300.00340 * 1 2 3
31 31 H 1.09000 * 109.47041 * 60.00201 * 1 2 3
32 32 H 1.09006 * 109.52545 * 302.27190 * 4 2 1
33 33 H 1.08997 * 109.52864 * 62.39913 * 4 2 1
34 34 H 0.96693 * 114.00772 * 179.97438 * 7 5 4
35 35 H 1.08997 * 109.46525 * 60.83781 * 8 5 4
36 36 H 1.08995 * 109.46235 * 180.81317 * 8 5 4
37 37 H 1.09004 * 109.46832 * 53.95757 * 10 9 8
38 38 H 1.08997 * 109.47223 * 173.95226 * 10 9 8
39 39 H 1.08003 * 119.95924 * 359.97438 * 12 11 10
40 40 H 1.07995 * 120.03974 * 180.27318 * 13 12 11
41 41 H 1.09000 * 109.47050 * 89.99996 * 16 15 14
42 42 H 1.09000 * 109.47333 * 209.99890 * 16 15 14
43 43 H 1.08997 * 109.47101 * 329.99847 * 16 15 14
44 44 H 1.08999 * 109.47245 * 209.99772 * 17 15 14
45 45 H 1.09004 * 109.47270 * 329.99587 * 17 15 14
46 46 H 0.96996 * 120.00565 * 180.02562 * 21 20 18
47 47 H 1.08004 * 120.04128 * 179.97438 * 26 14 13
48 48 H 1.08000 * 119.96596 * 180.02562 * 27 26 14
49 49 H 1.08994 * 109.51866 * 178.25481 * 28 9 8
50 50 H 1.09007 * 109.45009 * 58.26164 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0275 0.0000
4 6 2.0412 -0.7234 -1.2489
5 6 3.5713 -0.7707 -1.2114
6 1 3.9673 0.2447 -1.2304
7 8 4.0543 -1.4925 -2.3461
8 6 4.0238 -1.4717 0.0715
9 7 3.5100 -0.7411 1.2372
10 6 4.0387 -1.3047 2.4866
11 6 3.5033 -2.7010 2.6739
12 6 2.3202 -2.8996 3.3616
13 6 1.8238 -4.1773 3.5303
14 6 2.5204 -5.2645 3.0179
15 7 2.0240 -6.5585 3.1911
16 6 2.7595 -7.7038 2.6496
17 6 0.7677 -6.7704 3.9144
18 6 -0.3840 -6.7297 2.9434
19 1 -0.1988 -6.5631 1.8925
20 6 -1.6743 -6.9051 3.3966
21 7 -1.9000 -7.1085 4.6762
22 14 -3.1019 -6.8553 2.1929
23 1 -2.5851 -6.6143 0.8218
24 1 -3.8253 -8.1517 2.2289
25 1 -4.0303 -5.7597 2.5712
26 6 3.7115 -5.0618 2.3325
27 6 4.1991 -3.7809 2.1623
28 6 2.0409 -0.7230 1.2483
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 1.6458 -1.7390 -1.2692
33 1 1.7142 -0.1874 -2.1399
34 1 5.0178 -1.5618 -2.3873
35 1 3.6389 -2.4914 0.0834
36 1 5.1129 -1.4942 0.1083
37 1 5.1272 -1.3363 2.4389
38 1 3.7297 -0.6815 3.3257
39 1 1.7817 -2.0543 3.7639
40 1 0.8975 -4.3314 4.0637
41 1 3.4634 -8.0699 3.3970
42 1 2.0580 -8.4973 2.3919
43 1 3.3044 -7.3966 1.7570
44 1 0.7922 -7.7417 4.4084
45 1 0.6415 -5.9862 4.6609
46 1 -2.8076 -7.2323 4.9950
47 1 4.2557 -5.9049 1.9332
48 1 5.1249 -3.6226 1.6291
49 1 1.6899 -0.2019 2.1390
50 1 1.6653 -1.7462 1.2547
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000825311530.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:20:43
Heat of formation + Delta-G solvation = -43.902478 kcal
Electronic energy + Delta-G solvation = -27725.727377 eV
Core-core repulsion = 24137.311086 eV
Total energy + Delta-G solvation = -3588.416291 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.10146 -39.92173 -37.80151 -36.81731 -35.28482 -34.62773 -32.06267 -31.63170
-30.63146 -29.63084 -27.85164 -27.48222 -26.28324 -24.58096 -23.31763 -22.98346
-22.34589 -21.11948 -20.60292 -18.68272 -18.15411 -18.04238 -16.96746 -16.80948
-16.50977 -16.16145 -16.03098 -15.68411 -15.40511 -15.36454 -14.85966 -14.64466
-14.43495 -14.37886 -14.10817 -13.83696 -13.73372 -13.23680 -13.18644 -13.14301
-12.99829 -12.85936 -12.77367 -12.71424 -12.59012 -12.47641 -12.19802 -12.05000
-11.77945 -11.68613 -11.57461 -11.42715 -11.26682 -10.83699 -10.68445 -10.42276
-9.70292 -9.31038 -8.40388 -7.84959 -6.41690 0.64751 0.78662 1.31937
1.33794 1.45773 2.30306 2.58605 2.85268 3.01966 3.12542 3.40886
3.83069 3.86198 4.00888 4.03660 4.13073 4.16763 4.21099 4.36502
4.37604 4.43674 4.51237 4.58691 4.64773 4.66424 4.73286 4.79310
4.81550 4.85084 4.86030 4.93120 4.94723 5.00717 5.02557 5.08712
5.10776 5.15913 5.23673 5.26305 5.29033 5.47165 5.54375 5.61038
5.65495 5.81006 6.02798 6.11082 6.13951 6.16622 6.45274 6.78162
6.88430 6.92326 7.30337 8.79326
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.011653 B = 0.004002 C = 0.003464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2402.204492 B = 6994.993550 C = 8080.381545
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.078 4.078
3 H 0.093 0.907
4 C -0.111 4.111
5 C 0.113 3.887
6 H 0.076 0.924
7 O -0.584 6.584
8 C 0.024 3.976
9 N -0.517 5.517
10 C 0.109 3.891
11 C -0.195 4.195
12 C -0.060 4.060
13 C -0.217 4.217
14 C 0.212 3.788
15 N -0.632 5.632
16 C 0.098 3.902
17 C 0.267 3.733
18 C -0.541 4.541
19 H 0.045 0.955
20 C 0.016 3.984
21 N -0.925 5.925
22 Si 0.959 3.041
23 H -0.274 1.274
24 H -0.272 1.272
25 H -0.275 1.275
26 C -0.220 4.220
27 C -0.057 4.057
28 C 0.055 3.945
29 H 0.036 0.964
30 H 0.066 0.934
31 H 0.069 0.931
32 H 0.039 0.961
33 H 0.073 0.927
34 H 0.395 0.605
35 H 0.024 0.976
36 H 0.094 0.906
37 H 0.097 0.903
38 H 0.087 0.913
39 H 0.122 0.878
40 H 0.094 0.906
41 H 0.054 0.946
42 H 0.056 0.944
43 H 0.076 0.924
44 H 0.010 0.990
45 H 0.011 0.989
46 H 0.268 0.732
47 H 0.130 0.870
48 H 0.140 0.860
49 H 0.080 0.920
50 H 0.017 0.983
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.109 14.625 -8.905 22.187
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.096 4.096
3 H 0.111 0.889
4 C -0.149 4.149
5 C 0.054 3.946
6 H 0.094 0.906
7 O -0.392 6.392
8 C -0.105 4.105
9 N -0.240 5.240
10 C -0.018 4.018
11 C -0.199 4.199
12 C -0.080 4.080
13 C -0.240 4.240
14 C 0.107 3.893
15 N -0.339 5.339
16 C -0.045 4.045
17 C 0.146 3.854
18 C -0.580 4.580
19 H 0.063 0.937
20 C -0.184 4.184
21 N -0.564 5.564
22 Si 0.784 3.216
23 H -0.198 1.198
24 H -0.197 1.197
25 H -0.201 1.201
26 C -0.243 4.243
27 C -0.076 4.076
28 C -0.073 4.073
29 H 0.055 0.945
30 H 0.085 0.915
31 H 0.088 0.912
32 H 0.058 0.942
33 H 0.092 0.908
34 H 0.245 0.755
35 H 0.043 0.957
36 H 0.113 0.887
37 H 0.116 0.884
38 H 0.106 0.894
39 H 0.140 0.860
40 H 0.112 0.888
41 H 0.072 0.928
42 H 0.075 0.925
43 H 0.094 0.906
44 H 0.028 0.972
45 H 0.029 0.971
46 H 0.077 0.923
47 H 0.148 0.852
48 H 0.158 0.842
49 H 0.098 0.902
50 H 0.035 0.965
Dipole moment (debyes) X Y Z Total
from point charges 13.435 14.811 -8.924 21.897
hybrid contribution -1.157 -1.600 0.114 1.977
sum 12.279 13.211 -8.810 20.073
Atomic orbital electron populations
1.21779 0.94435 1.01314 1.02836 1.21050 0.95589 1.00218 0.92775
0.88922 1.21619 0.94320 1.00200 0.98777 1.21729 0.94182 0.94790
0.83942 0.90564 1.86502 1.28540 1.78410 1.45755 1.22834 1.00937
0.95754 0.90945 1.62424 1.07804 1.51663 1.02089 1.21113 1.00175
0.88559 0.91957 1.20372 0.97338 0.97537 1.04658 1.20841 0.95479
0.94990 0.96649 1.20783 1.01883 0.93211 1.08117 1.18239 0.92771
0.85038 0.93213 1.46976 1.24320 1.03439 1.59213 1.21591 0.95993
0.88307 0.98567 1.18766 0.80421 0.95146 0.91088 1.21762 0.92361
1.49520 0.94357 0.93651 1.25735 1.01308 0.94452 0.96873 1.70031
1.22006 1.49576 1.14836 0.85499 0.79009 0.78208 0.78930 1.19841
1.19737 1.20063 1.20805 0.97370 0.98861 1.07271 1.20919 0.98898
0.90897 0.96853 1.22223 0.87794 0.98514 0.98786 0.94483 0.91498
0.91223 0.94201 0.90813 0.75543 0.95734 0.88748 0.88434 0.89423
0.86002 0.88830 0.92803 0.92537 0.90571 0.97247 0.97113 0.92301
0.85248 0.84240 0.90154 0.96465
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.97 9.20 71.98 0.66 -2.31 16
2 C -0.08 -1.59 2.88 -10.74 -0.03 -1.62 16
3 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
4 C -0.11 -2.50 4.94 30.67 0.15 -2.35 16
5 C 0.11 2.20 3.63 30.65 0.11 2.31 16
6 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16
7 O -0.58 -11.70 13.32 -148.98 -1.98 -13.68 16
8 C 0.02 0.48 4.45 86.33 0.38 0.87 16
9 N -0.52 -10.70 4.86 -900.70 -4.38 -15.08 16
10 C 0.11 2.24 5.55 85.56 0.48 2.71 16
11 C -0.20 -5.38 4.04 -19.84 -0.08 -5.46 16
12 C -0.06 -2.02 8.02 22.25 0.18 -1.84 16
13 C -0.22 -9.15 9.21 22.40 0.21 -8.94 16
14 C 0.21 8.80 6.55 38.21 0.25 9.05 16
15 N -0.63 -28.19 2.99 -726.57 -2.17 -30.36 16
16 C 0.10 3.50 10.19 127.77 1.30 4.80 16
17 C 0.27 14.26 4.91 85.63 0.42 14.68 16
18 C -0.54 -30.91 9.39 25.60 0.24 -30.67 16
19 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16
20 C 0.02 0.90 5.46 84.65 0.46 1.36 16
21 N -0.92 -54.56 13.29 21.45 0.28 -54.28 16
22 Si 0.96 44.67 29.54 68.60 2.03 46.69 16
23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16
24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16
25 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16
26 C -0.22 -7.35 9.21 22.40 0.21 -7.15 16
27 C -0.06 -1.57 8.10 22.25 0.18 -1.39 16
28 C 0.05 1.29 3.84 86.31 0.33 1.62 16
29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16
30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
32 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16
33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
34 H 0.39 4.16 9.08 -74.06 -0.67 3.49 16
35 H 0.02 0.65 6.55 -2.39 -0.02 0.63 16
36 H 0.09 1.45 8.06 -2.39 -0.02 1.44 16
37 H 0.10 1.62 8.00 -2.39 -0.02 1.60 16
38 H 0.09 1.68 8.08 -2.39 -0.02 1.66 16
39 H 0.12 3.64 8.03 -2.91 -0.02 3.62 16
40 H 0.09 4.57 6.14 -2.91 -0.02 4.56 16
41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
42 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16
43 H 0.08 2.33 6.20 -2.39 -0.01 2.31 16
44 H 0.01 0.53 8.07 -2.39 -0.02 0.51 16
45 H 0.01 0.63 6.20 -2.38 -0.01 0.61 16
46 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16
47 H 0.13 3.81 6.14 -2.91 -0.02 3.79 16
48 H 0.14 2.95 8.03 -2.91 -0.02 2.92 16
49 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16
50 H 0.02 0.52 6.48 -2.38 -0.02 0.51 16
Total: -1.00 -67.09 387.40 -0.53 -67.62
By element:
Atomic # 1 Polarization: 23.17 SS G_CDS: 0.24 Total: 23.41 kcal
Atomic # 6 Polarization: -29.78 SS G_CDS: 5.45 Total: -24.33 kcal
Atomic # 7 Polarization: -93.45 SS G_CDS: -6.26 Total: -99.72 kcal
Atomic # 8 Polarization: -11.70 SS G_CDS: -1.98 Total: -13.68 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal
Total: -67.09 -0.53 -67.62 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000825311530.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.721 kcal
(2) G-P(sol) polarization free energy of solvation -67.092 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.371 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.902 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds