Wall clock time and date at job start Tue Mar 31 2020 12:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47228 * 2 1 4 4 N 1.46909 * 109.46951 * 119.99720 * 2 1 3 5 5 C 1.48530 * 111.00209 * 185.04518 * 4 2 1 6 6 C 1.54928 * 103.22850 * 200.27908 * 5 4 2 7 7 C 1.54597 * 102.92040 * 37.41425 * 6 5 4 8 8 H 1.09001 * 110.30550 * 96.96268 * 7 6 5 9 9 N 1.46906 * 110.39303 * 219.07984 * 7 6 5 10 10 C 1.46896 * 110.99954 * 302.66320 * 9 7 6 11 11 C 1.46897 * 110.99948 * 178.70472 * 9 7 6 12 12 C 1.50701 * 109.46981 * 190.00395 * 11 9 7 13 13 C 1.38310 * 119.92843 * 269.72757 * 12 11 9 14 14 C 1.38099 * 120.06545 * 179.72580 * 13 12 11 15 15 C 1.38880 * 119.93055 * 0.56983 * 14 13 12 16 16 O 1.35755 * 120.06783 * 179.68459 * 15 14 13 17 17 C 1.34831 * 116.99783 * 185.77271 * 16 15 14 18 18 H 1.07997 * 119.99944 * 4.09000 * 17 16 15 19 19 C 1.38654 * 119.99860 * 184.09382 * 17 16 15 20 20 N 1.31557 * 120.00132 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99811 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47300 * 90.00093 * 21 19 17 23 23 H 1.48503 * 109.47105 * 209.99980 * 21 19 17 24 24 H 1.48494 * 109.47440 * 330.00077 * 21 19 17 25 25 C 1.38877 * 119.86141 * 359.70488 * 15 14 13 26 26 C 1.38094 * 119.93428 * 359.97438 * 25 15 14 27 27 C 1.47903 * 110.99738 * 67.64923 * 4 2 1 28 28 H 1.09003 * 109.46942 * 300.00565 * 1 2 3 29 29 H 1.09001 * 109.46394 * 59.99934 * 1 2 3 30 30 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47378 * 239.99141 * 2 1 3 32 32 H 1.09002 * 109.47134 * 305.73717 * 3 2 1 33 33 H 1.08998 * 109.47072 * 65.74217 * 3 2 1 34 34 H 1.09000 * 109.46874 * 185.73845 * 3 2 1 35 35 H 1.09005 * 110.66513 * 318.71654 * 5 4 2 36 36 H 1.09006 * 110.66443 * 81.84326 * 5 4 2 37 37 H 1.09001 * 110.72852 * 279.05997 * 6 5 4 38 38 H 1.09000 * 110.72460 * 155.77352 * 6 5 4 39 39 H 1.08997 * 109.47314 * 54.10113 * 10 9 7 40 40 H 1.09004 * 109.46996 * 174.10148 * 10 9 7 41 41 H 1.08997 * 109.47515 * 294.09539 * 10 9 7 42 42 H 1.09000 * 109.47378 * 310.00395 * 11 9 7 43 43 H 1.09001 * 109.46988 * 70.00673 * 11 9 7 44 44 H 1.08003 * 119.96402 * 359.97438 * 13 12 11 45 45 H 1.07999 * 120.03135 * 180.27672 * 14 13 12 46 46 H 0.97000 * 120.00094 * 180.02562 * 20 19 17 47 47 H 1.08004 * 120.02968 * 179.97438 * 25 15 14 48 48 H 1.07995 * 119.97157 * 180.02562 * 26 25 15 49 49 H 1.08994 * 109.91797 * 26.49341 * 27 4 2 50 50 H 1.08999 * 110.07917 * 265.28527 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1996 5 6 3.4994 -0.6076 1.2965 6 6 3.8599 -1.7760 2.2479 7 6 2.8603 -2.8802 1.8337 8 1 3.3307 -3.5744 1.1373 9 7 2.3725 -3.5996 3.0180 10 6 3.4878 -4.1798 3.7779 11 6 1.3978 -4.6323 2.6422 12 6 0.7402 -5.1779 3.8836 13 6 1.2900 -6.2681 4.5333 14 6 0.6930 -6.7668 5.6743 15 6 -0.4673 -6.1800 6.1625 16 8 -1.0600 -6.6721 7.2802 17 6 -2.2453 -6.1341 7.6318 18 1 -2.7123 -5.3952 6.9976 19 6 -2.8646 -6.5295 8.8077 20 7 -4.0209 -6.0043 9.1510 21 14 -2.0571 -7.8080 9.9043 22 1 -1.1754 -7.1303 10.8884 23 1 -3.1048 -8.5753 10.6246 24 1 -1.2490 -8.7349 9.0719 25 6 -1.0200 -5.0890 5.5045 26 6 -0.4146 -4.5907 4.3677 27 6 1.7013 -2.1358 1.1454 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.5953 1.9851 -0.8342 33 1 1.7631 1.9257 0.9369 34 1 3.1252 1.4441 -0.1028 35 1 3.9579 -0.7525 0.3182 36 1 3.8026 0.3468 1.7271 37 1 3.7071 -1.4878 3.2879 38 1 4.8865 -2.1039 2.0843 39 1 4.2116 -3.3997 4.0136 40 1 3.1095 -4.6158 4.7025 41 1 3.9697 -4.9544 3.1816 42 1 0.6398 -4.1968 1.9910 43 1 1.9081 -5.4395 2.1166 44 1 2.1894 -6.7272 4.1503 45 1 1.1252 -7.6154 6.1838 46 1 -4.4539 -6.2806 9.9738 47 1 -1.9224 -4.6308 5.8814 48 1 -0.8436 -3.7421 3.8558 49 1 1.6167 -2.4587 0.1078 50 1 0.7680 -2.3332 1.6728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832778755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:54 Heat of formation + Delta-G solvation = 12.275593 kcal Electronic energy + Delta-G solvation = -26755.447966 eV Core-core repulsion = 23169.467739 eV Total energy + Delta-G solvation = -3585.980227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.94971 -39.13214 -37.51400 -36.10602 -33.71748 -32.36606 -30.48727 -30.13129 -29.62771 -28.38986 -27.32721 -26.32730 -24.96215 -23.32001 -22.24250 -21.96313 -20.43474 -20.33343 -19.69469 -17.86225 -17.22072 -16.76105 -16.40916 -15.38477 -15.04934 -14.91495 -14.54815 -14.32560 -14.01067 -13.89130 -13.76428 -13.58999 -13.28743 -13.14580 -12.97042 -12.61023 -12.49741 -12.39108 -12.31164 -12.18778 -11.92651 -11.66113 -11.53208 -11.43995 -11.27188 -11.16866 -11.09347 -10.99964 -10.94619 -10.68106 -10.61118 -10.57255 -10.11443 -9.37206 -8.84589 -8.59192 -8.26471 -8.18233 -7.27904 -6.39481 -4.05657 2.16382 2.21865 3.23263 3.27028 3.41536 3.70517 3.93824 4.25436 4.35327 4.50549 4.60077 4.71251 4.82033 4.90123 5.00082 5.05812 5.08624 5.11462 5.14539 5.29551 5.32506 5.35995 5.42549 5.50047 5.53992 5.57462 5.59977 5.64791 5.66314 5.67956 5.69851 5.80792 5.84801 5.86305 5.95490 5.97906 6.08172 6.11199 6.18157 6.37551 6.60245 6.70835 6.82821 6.89597 7.03223 7.08572 7.22209 7.31153 7.38127 7.64787 7.82965 8.06498 8.95914 9.58826 10.68319 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.020143 B = 0.002531 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.715490 B =11060.632028 C =11892.308661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 C -0.146 4.146 4 N -0.505 5.505 5 C 0.038 3.962 6 C -0.117 4.117 7 C 0.073 3.927 8 H 0.041 0.959 9 N -0.522 5.522 10 C 0.023 3.977 11 C 0.109 3.891 12 C -0.169 4.169 13 C -0.070 4.070 14 C -0.194 4.194 15 C 0.161 3.839 16 O -0.219 6.219 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.221 4.221 26 C -0.050 4.050 27 C 0.044 3.956 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.019 0.981 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.279 0.721 47 H 0.132 0.868 48 H 0.109 0.891 49 H 0.040 0.960 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.047 9.440 -18.535 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.041 4.041 3 C -0.204 4.204 4 N -0.230 5.230 5 C -0.090 4.090 6 C -0.155 4.155 7 C -0.036 4.036 8 H 0.059 0.941 9 N -0.247 5.247 10 C -0.125 4.125 11 C -0.018 4.018 12 C -0.170 4.170 13 C -0.089 4.089 14 C -0.213 4.213 15 C 0.109 3.891 16 O -0.124 6.124 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.240 4.240 26 C -0.069 4.069 27 C -0.084 4.084 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.037 0.963 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.126 0.874 45 H 0.133 0.867 46 H 0.089 0.911 47 H 0.150 0.850 48 H 0.127 0.873 49 H 0.058 0.942 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.420 9.861 -17.480 24.713 hybrid contribution 0.884 -1.399 -0.708 1.800 sum 15.304 8.462 -18.187 25.231 Atomic orbital electron populations 1.21815 0.94016 1.02169 1.02126 1.21827 0.96245 0.95192 0.90877 1.21874 1.00640 0.95338 1.02509 1.64847 1.10736 1.10448 1.36996 1.23181 0.88440 0.99460 0.97963 1.22605 0.97504 0.94159 1.01252 1.22473 0.94639 0.94988 0.91474 0.94117 1.62165 1.14199 1.27579 1.20737 1.22427 0.92950 0.98118 0.98986 1.20870 0.94235 0.91887 0.94773 1.19103 0.98586 0.99499 0.99792 1.20471 0.98171 0.95747 0.94541 1.20147 0.97787 1.03822 0.99565 1.19132 0.91553 0.91555 0.86903 1.83576 1.34602 1.56956 1.37232 1.20770 0.93120 1.24522 1.07945 0.87626 1.24461 0.95327 0.97849 0.96402 1.69648 1.15248 1.42233 1.24691 0.86184 0.79087 0.81406 0.80237 1.19915 1.20811 1.18396 1.21278 1.03925 0.99977 0.98849 1.20606 0.94124 0.97303 0.94834 1.22961 0.99786 0.87351 0.98280 0.91534 0.92480 0.92640 0.94447 0.92284 0.91522 0.92880 0.94192 0.89934 0.89252 0.91469 0.91717 0.90287 0.96289 0.90682 0.95089 0.87440 0.86712 0.91082 0.85014 0.87258 0.94185 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.22 37.16 0.34 -0.88 16 2 C 0.07 0.58 2.43 -67.71 -0.16 0.41 16 3 C -0.15 -1.07 8.75 37.16 0.33 -0.75 16 4 N -0.51 -5.12 5.11 -222.50 -1.14 -6.25 16 5 C 0.04 0.33 5.23 -1.90 -0.01 0.32 16 6 C -0.12 -1.09 5.39 -24.87 -0.13 -1.22 16 7 C 0.07 0.77 2.72 -66.36 -0.18 0.59 16 8 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 9 N -0.52 -6.54 4.53 -234.70 -1.06 -7.61 16 10 C 0.02 0.27 8.87 60.06 0.53 0.81 16 11 C 0.11 1.44 4.89 -4.98 -0.02 1.41 16 12 C -0.17 -2.76 4.88 -104.57 -0.51 -3.27 16 13 C -0.07 -1.18 8.02 -39.61 -0.32 -1.50 16 14 C -0.19 -3.83 9.99 -39.39 -0.39 -4.22 16 15 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 16 O -0.22 -5.81 8.59 0.03 0.00 -5.81 16 17 C -0.39 -11.02 9.91 30.89 0.31 -10.71 16 18 H 0.11 3.07 5.50 -52.49 -0.29 2.78 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.61 13.96 55.48 0.77 -24.84 16 21 Si 0.91 21.83 28.62 -169.99 -4.86 16.97 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.22 -4.81 9.14 -39.40 -0.36 -5.17 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 27 C 0.04 0.46 4.76 -2.76 -0.01 0.45 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.49 7.44 -51.93 -0.39 0.11 16 31 H 0.04 0.32 7.88 -51.93 -0.41 -0.09 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.36 7.17 -51.93 -0.37 -0.01 16 35 H 0.04 0.32 8.02 -51.93 -0.42 -0.10 16 36 H 0.08 0.68 7.77 -51.93 -0.40 0.27 16 37 H 0.09 0.96 7.55 -51.93 -0.39 0.57 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 40 H 0.08 1.07 6.30 -51.93 -0.33 0.75 16 41 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 42 H 0.07 0.94 6.22 -51.93 -0.32 0.61 16 43 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 44 H 0.11 1.51 8.04 -52.48 -0.42 1.09 16 45 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 46 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.13 3.04 5.70 -52.48 -0.30 2.74 16 48 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 49 H 0.04 0.39 7.61 -51.93 -0.40 -0.01 16 50 H 0.09 1.12 6.60 -51.93 -0.34 0.78 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -29.29 385.98 -10.29 -39.57 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.48 Total: 2.03 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -1.34 Total: -19.88 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -1.43 Total: -38.70 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: 0.00 Total: -5.81 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.29 -10.29 -39.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832778755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.850 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds