Wall clock time and date at job start Tue Mar 31 2020 13:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.82580 * 2 1 4 4 C 1.54382 * 109.83335 * 120.89312 * 2 1 3 5 5 C 1.55299 * 102.25335 * 140.87232 * 4 2 1 6 6 C 1.54944 * 100.94354 * 325.86335 * 5 4 2 7 7 H 1.08998 * 110.31378 * 277.53480 * 6 5 4 8 8 C 1.53002 * 110.31283 * 155.36156 * 6 5 4 9 9 N 1.46897 * 109.47354 * 180.02562 * 8 6 5 10 10 C 1.46905 * 110.99822 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46814 * 180.02562 * 10 9 8 12 12 C 1.38283 * 119.92288 * 269.72612 * 11 10 9 13 13 C 1.38105 * 120.07126 * 179.72804 * 12 11 10 14 14 C 1.38917 * 119.92547 * 0.54421 * 13 12 11 15 15 N 1.39674 * 120.07483 * 179.70535 * 14 13 12 16 16 C 1.46501 * 120.00131 * 180.02562 * 15 14 13 17 17 C 1.46500 * 119.99814 * 0.02562 * 15 14 13 18 18 C 1.50700 * 109.46911 * 90.00311 * 17 15 14 19 19 H 1.07997 * 120.00052 * 0.02562 * 18 17 15 20 20 C 1.37883 * 119.99958 * 179.97438 * 18 17 15 21 21 N 1.31509 * 120.00181 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99968 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47181 * 89.99628 * 22 20 18 24 24 H 1.48496 * 109.47307 * 209.99755 * 22 20 18 25 25 H 1.48499 * 109.47292 * 329.99912 * 22 20 18 26 26 C 1.38905 * 119.84978 * 359.72868 * 14 13 12 27 27 C 1.38112 * 119.92540 * 0.02562 * 26 14 13 28 28 O 1.43236 * 109.83198 * 239.02723 * 2 1 3 29 29 H 1.09002 * 109.47153 * 299.10752 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.10942 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.10924 * 1 2 3 32 32 H 1.09001 * 110.84566 * 259.06095 * 4 2 1 33 33 H 1.08994 * 110.84657 * 22.47088 * 4 2 1 34 34 H 1.08998 * 111.13062 * 83.78287 * 5 4 2 35 35 H 1.09002 * 111.12284 * 207.90798 * 5 4 2 36 36 H 1.09004 * 109.46821 * 300.00818 * 8 6 5 37 37 H 1.09007 * 109.46756 * 59.99929 * 8 6 5 38 38 H 1.00900 * 110.99493 * 56.05287 * 9 8 6 39 39 H 1.09004 * 109.47058 * 300.00246 * 10 9 8 40 40 H 1.08993 * 109.47036 * 60.00404 * 10 9 8 41 41 H 1.07996 * 119.96648 * 359.97438 * 12 11 10 42 42 H 1.08005 * 120.03911 * 180.27395 * 13 12 11 43 43 H 1.09000 * 109.47042 * 89.99932 * 16 15 14 44 44 H 1.08996 * 109.46911 * 209.99795 * 16 15 14 45 45 H 1.09002 * 109.46265 * 329.99834 * 16 15 14 46 46 H 1.09003 * 109.47263 * 210.00070 * 17 15 14 47 47 H 1.08995 * 109.47715 * 330.00375 * 17 15 14 48 48 H 0.96996 * 120.00606 * 180.02562 * 21 20 18 49 49 H 1.08000 * 120.03725 * 179.97438 * 26 14 13 50 50 H 1.08002 * 119.96103 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0255 0.0000 4 6 2.0538 -0.7456 1.2462 5 6 3.2730 -1.5216 0.6778 6 6 2.7747 -1.8450 -0.7532 7 1 2.1401 -2.7311 -0.7417 8 6 3.9626 -2.0534 -1.6948 9 7 3.4698 -2.3579 -3.0448 10 6 4.5853 -2.5641 -3.9783 11 6 4.0421 -2.8729 -5.3496 12 6 3.8019 -4.1841 -5.7172 13 6 3.2988 -4.4702 -6.9712 14 6 3.0447 -3.4399 -7.8676 15 7 2.5417 -3.7261 -9.1387 16 6 2.2747 -2.6383 -10.0830 17 6 2.2810 -5.1143 -9.5278 18 6 0.8661 -5.4814 -9.1612 19 1 0.2251 -4.7534 -8.6864 20 6 0.3897 -6.7464 -9.4331 21 7 1.1697 -7.6324 -10.0126 22 14 -1.3639 -7.2017 -8.9781 23 1 -2.2676 -6.8870 -10.1137 24 1 -1.4358 -8.6538 -8.6759 25 1 -1.7825 -6.4262 -7.7829 26 6 3.2924 -2.1243 -7.4970 27 6 3.7907 -1.8448 -6.2396 28 8 2.0159 -0.6934 -1.1553 29 1 -0.3633 0.4999 0.8979 30 1 -0.3633 -1.0276 -0.0160 31 1 -0.3634 0.5276 -0.8819 32 1 2.3672 -0.0411 2.0166 33 1 1.2999 -1.4310 1.6335 34 1 4.1621 -0.8915 0.6511 35 1 3.4577 -2.4335 1.2456 36 1 4.5661 -1.1462 -1.7247 37 1 4.5710 -2.8828 -1.3340 38 1 2.8510 -1.6329 -3.3758 39 1 5.1929 -1.6602 -4.0235 40 1 5.1981 -3.3970 -3.6338 41 1 4.0043 -4.9851 -5.0216 42 1 3.1073 -5.4942 -7.2562 43 1 3.1673 -2.4472 -10.6788 44 1 1.4528 -2.9214 -10.7404 45 1 2.0057 -1.7370 -9.5321 46 1 2.4170 -5.2217 -10.6040 47 1 2.9742 -5.7741 -9.0063 48 1 0.8345 -8.5222 -10.2042 49 1 3.0963 -1.3209 -8.1916 50 1 3.9839 -0.8221 -5.9510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835086025.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:56 Heat of formation + Delta-G solvation = -22.836289 kcal Electronic energy + Delta-G solvation = -26073.949923 eV Core-core repulsion = 22486.447131 eV Total energy + Delta-G solvation = -3587.502792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.91845 -38.96424 -36.54236 -35.04371 -32.73907 -32.53634 -32.06056 -30.38248 -29.90330 -27.78489 -27.49351 -25.47629 -24.10645 -23.07612 -22.03930 -21.71070 -21.45630 -20.73956 -19.50562 -17.38233 -16.66302 -16.43933 -16.17053 -15.62328 -15.13046 -14.77439 -14.52616 -14.31563 -14.27354 -13.86545 -13.72247 -13.58294 -13.33455 -13.05333 -12.83136 -12.70743 -12.37157 -12.16715 -12.11754 -11.96590 -11.80941 -11.68101 -11.35998 -11.28664 -11.21327 -11.14444 -11.05110 -10.88297 -10.65720 -10.54341 -10.21707 -9.85689 -9.71958 -9.68947 -8.80564 -8.47618 -8.30054 -8.19791 -6.42424 -5.98181 -4.14066 2.17504 2.27495 3.29005 3.35748 3.41390 3.50565 4.13394 4.17959 4.21061 4.44714 4.45512 4.57536 4.75533 4.91046 4.95009 5.06698 5.15949 5.24404 5.24798 5.30157 5.33528 5.38136 5.40515 5.46144 5.54087 5.62473 5.64807 5.70887 5.79234 5.84223 5.88144 5.93730 5.97190 6.07181 6.13039 6.31953 6.44948 6.49400 6.69665 6.87270 6.97577 7.05064 7.14976 7.23488 7.31549 7.42169 7.54630 7.66312 7.84494 8.19020 8.31001 8.53280 8.95195 9.52716 10.98740 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002549 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.154200 B =10982.529609 C =11967.875366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.076 3.924 3 H 0.076 0.924 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.082 3.918 7 H 0.080 0.920 8 C 0.062 3.938 9 N -0.682 5.682 10 C 0.116 3.884 11 C -0.172 4.172 12 C -0.051 4.051 13 C -0.188 4.188 14 C 0.241 3.759 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.249 3.751 18 C -0.530 4.530 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.222 4.222 27 C -0.067 4.067 28 O -0.373 6.373 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.350 0.650 39 H 0.026 0.974 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.112 0.888 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.642 14.369 19.389 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 H 0.094 0.906 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.025 3.975 7 H 0.097 0.903 8 C -0.068 4.068 9 N -0.314 5.314 10 C -0.012 4.012 11 C -0.175 4.175 12 C -0.070 4.070 13 C -0.211 4.211 14 C 0.134 3.866 15 N -0.322 5.322 16 C -0.046 4.046 17 C 0.129 3.871 18 C -0.569 4.569 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.245 4.245 27 C -0.087 4.087 28 O -0.293 6.293 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.169 0.831 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.130 0.870 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.441 13.506 19.000 23.938 hybrid contribution -0.796 0.506 0.260 0.978 sum 4.646 14.012 19.260 24.266 Atomic orbital electron populations 1.22146 0.94952 1.02773 1.02181 1.22676 0.94381 0.96114 0.84958 0.90637 1.23181 0.97917 0.99771 0.98045 1.23279 0.98449 1.01177 0.96076 1.23064 0.92582 0.89577 0.92306 0.90255 1.22089 0.95013 0.99556 0.90101 1.60542 1.18704 1.51058 1.01112 1.20649 0.91596 0.99320 0.89680 1.19167 1.09549 0.93612 0.95171 1.20632 0.96083 0.95343 0.94979 1.20893 1.06586 0.99447 0.94150 1.17957 0.90133 0.92879 0.85622 1.47092 1.66285 1.08129 1.10685 1.21465 0.99803 0.90353 0.92930 1.19281 0.96224 0.75727 0.95853 1.21588 0.97882 0.97654 1.39767 0.92251 1.24961 0.97919 0.96203 0.95006 1.69927 1.36045 1.05307 1.42211 0.86524 0.84564 0.77643 0.78938 1.20671 1.21092 1.19720 1.20512 1.11004 0.94742 0.98219 1.20510 0.97695 0.97369 0.93096 1.88455 1.70679 1.40300 1.29894 0.91783 0.92051 0.91826 0.90242 0.90339 0.90403 0.89801 0.95063 0.90096 0.83127 0.95541 0.91141 0.87055 0.85097 0.94672 0.91489 0.92708 0.95245 0.94608 0.92678 0.86981 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.44 37.16 0.35 -0.95 16 2 C 0.08 0.66 4.16 -26.01 -0.11 0.55 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.15 -1.00 6.55 -24.79 -0.16 -1.17 16 5 C -0.15 -1.07 6.57 -24.49 -0.16 -1.23 16 6 C 0.08 0.81 3.69 -25.70 -0.09 0.72 16 7 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 8 C 0.06 0.64 5.43 -3.82 -0.02 0.62 16 9 N -0.68 -8.95 6.49 -115.05 -0.75 -9.69 16 10 C 0.12 1.53 5.81 -4.97 -0.03 1.50 16 11 C -0.17 -2.79 5.39 -104.59 -0.56 -3.35 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.19 -3.94 9.21 -39.38 -0.36 -4.30 16 14 C 0.24 5.03 6.55 -83.79 -0.55 4.49 16 15 N -0.62 -13.52 2.99 -181.00 -0.54 -14.07 16 16 C 0.10 1.78 10.19 59.85 0.61 2.39 16 17 C 0.25 6.35 4.91 -5.19 -0.03 6.33 16 18 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 22 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.22 -4.00 9.21 -39.38 -0.36 -4.36 16 27 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 28 O -0.37 -4.29 10.24 -35.23 -0.36 -4.66 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.49 7.85 -51.93 -0.41 0.09 16 34 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.35 4.93 8.30 -39.29 -0.33 4.61 16 39 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.13 3.00 6.14 -52.48 -0.32 2.68 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 45 H 0.05 0.88 6.20 -51.93 -0.32 0.56 16 46 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 48 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.11 1.83 6.14 -52.49 -0.32 1.50 16 50 H 0.10 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -29.97 400.04 -11.31 -41.28 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.74 Total: 4.68 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.67 Total: -14.98 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.55 Total: -48.99 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.36 Total: -4.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.97 -11.31 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835086025.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.446 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds