Wall clock time and date at job start Tue Mar 31 2020 13:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.82580 * 2 1 4 4 C 1.54382 * 109.83335 * 120.89312 * 2 1 3 5 5 C 1.55299 * 102.25335 * 140.87232 * 4 2 1 6 6 C 1.54944 * 100.94354 * 325.86335 * 5 4 2 7 7 H 1.08998 * 110.31378 * 277.53480 * 6 5 4 8 8 C 1.53002 * 110.31283 * 155.36156 * 6 5 4 9 9 N 1.46897 * 109.47354 * 180.02562 * 8 6 5 10 10 C 1.46905 * 110.99822 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46814 * 180.02562 * 10 9 8 12 12 C 1.38283 * 119.92288 * 269.72612 * 11 10 9 13 13 C 1.38105 * 120.07126 * 179.72804 * 12 11 10 14 14 C 1.38917 * 119.92547 * 0.54421 * 13 12 11 15 15 N 1.39674 * 120.07483 * 179.70535 * 14 13 12 16 16 C 1.46501 * 120.00131 * 180.02562 * 15 14 13 17 17 C 1.46500 * 119.99814 * 0.02562 * 15 14 13 18 18 C 1.50700 * 109.46911 * 90.00311 * 17 15 14 19 19 H 1.07997 * 120.00052 * 0.02562 * 18 17 15 20 20 C 1.37883 * 119.99958 * 179.97438 * 18 17 15 21 21 N 1.31509 * 120.00181 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99968 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47181 * 89.99628 * 22 20 18 24 24 H 1.48496 * 109.47307 * 209.99755 * 22 20 18 25 25 H 1.48499 * 109.47292 * 329.99912 * 22 20 18 26 26 C 1.38905 * 119.84978 * 359.72868 * 14 13 12 27 27 C 1.38112 * 119.92540 * 0.02562 * 26 14 13 28 28 O 1.43236 * 109.83198 * 239.02723 * 2 1 3 29 29 H 1.09002 * 109.47153 * 299.10752 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.10942 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.10924 * 1 2 3 32 32 H 1.09001 * 110.84566 * 259.06095 * 4 2 1 33 33 H 1.08994 * 110.84657 * 22.47088 * 4 2 1 34 34 H 1.08998 * 111.13062 * 83.78287 * 5 4 2 35 35 H 1.09002 * 111.12284 * 207.90798 * 5 4 2 36 36 H 1.09004 * 109.46821 * 300.00818 * 8 6 5 37 37 H 1.09007 * 109.46756 * 59.99929 * 8 6 5 38 38 H 1.00900 * 110.99493 * 56.05287 * 9 8 6 39 39 H 1.09004 * 109.47058 * 300.00246 * 10 9 8 40 40 H 1.08993 * 109.47036 * 60.00404 * 10 9 8 41 41 H 1.07996 * 119.96648 * 359.97438 * 12 11 10 42 42 H 1.08005 * 120.03911 * 180.27395 * 13 12 11 43 43 H 1.09000 * 109.47042 * 89.99932 * 16 15 14 44 44 H 1.08996 * 109.46911 * 209.99795 * 16 15 14 45 45 H 1.09002 * 109.46265 * 329.99834 * 16 15 14 46 46 H 1.09003 * 109.47263 * 210.00070 * 17 15 14 47 47 H 1.08995 * 109.47715 * 330.00375 * 17 15 14 48 48 H 0.96996 * 120.00606 * 180.02562 * 21 20 18 49 49 H 1.08000 * 120.03725 * 179.97438 * 26 14 13 50 50 H 1.08002 * 119.96103 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0255 0.0000 4 6 2.0538 -0.7456 1.2462 5 6 3.2730 -1.5216 0.6778 6 6 2.7747 -1.8450 -0.7532 7 1 2.1401 -2.7311 -0.7417 8 6 3.9626 -2.0534 -1.6948 9 7 3.4698 -2.3579 -3.0448 10 6 4.5853 -2.5641 -3.9783 11 6 4.0421 -2.8729 -5.3496 12 6 3.8019 -4.1841 -5.7172 13 6 3.2988 -4.4702 -6.9712 14 6 3.0447 -3.4399 -7.8676 15 7 2.5417 -3.7261 -9.1387 16 6 2.2747 -2.6383 -10.0830 17 6 2.2810 -5.1143 -9.5278 18 6 0.8661 -5.4814 -9.1612 19 1 0.2251 -4.7534 -8.6864 20 6 0.3897 -6.7464 -9.4331 21 7 1.1697 -7.6324 -10.0126 22 14 -1.3639 -7.2017 -8.9781 23 1 -2.2676 -6.8870 -10.1137 24 1 -1.4358 -8.6538 -8.6759 25 1 -1.7825 -6.4262 -7.7829 26 6 3.2924 -2.1243 -7.4970 27 6 3.7907 -1.8448 -6.2396 28 8 2.0159 -0.6934 -1.1553 29 1 -0.3633 0.4999 0.8979 30 1 -0.3633 -1.0276 -0.0160 31 1 -0.3634 0.5276 -0.8819 32 1 2.3672 -0.0411 2.0166 33 1 1.2999 -1.4310 1.6335 34 1 4.1621 -0.8915 0.6511 35 1 3.4577 -2.4335 1.2456 36 1 4.5661 -1.1462 -1.7247 37 1 4.5710 -2.8828 -1.3340 38 1 2.8510 -1.6329 -3.3758 39 1 5.1929 -1.6602 -4.0235 40 1 5.1981 -3.3970 -3.6338 41 1 4.0043 -4.9851 -5.0216 42 1 3.1073 -5.4942 -7.2562 43 1 3.1673 -2.4472 -10.6788 44 1 1.4528 -2.9214 -10.7404 45 1 2.0057 -1.7370 -9.5321 46 1 2.4170 -5.2217 -10.6040 47 1 2.9742 -5.7741 -9.0063 48 1 0.8345 -8.5222 -10.2042 49 1 3.0963 -1.3209 -8.1916 50 1 3.9839 -0.8221 -5.9510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835086025.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:55 Heat of formation + Delta-G solvation = -39.881123 kcal Electronic energy + Delta-G solvation = -26074.689042 eV Core-core repulsion = 22486.447131 eV Total energy + Delta-G solvation = -3588.241912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64901 -40.38527 -37.86527 -36.32135 -34.74683 -33.20408 -32.94021 -31.88313 -31.09668 -29.62881 -28.46426 -26.85213 -25.58606 -24.12279 -23.33322 -22.99977 -22.39452 -21.44011 -20.98242 -18.63916 -18.23616 -17.97509 -16.98844 -16.89860 -16.60275 -16.06275 -15.70916 -15.55090 -15.36816 -15.23432 -14.94337 -14.57541 -14.30715 -14.29816 -14.20595 -14.01974 -13.53493 -13.26935 -13.23003 -13.10996 -13.02188 -12.82472 -12.70542 -12.64123 -12.55689 -12.52904 -12.29382 -12.08722 -11.77710 -11.69626 -11.65503 -11.57478 -11.40651 -10.64264 -10.44076 -10.41435 -9.66308 -9.26455 -8.36298 -7.80020 -6.37462 0.71616 0.84117 1.36071 1.37671 1.48993 2.34377 2.63632 2.83127 3.03825 3.06019 3.49214 3.60952 3.88681 3.98235 4.08254 4.11176 4.22625 4.23421 4.28806 4.42367 4.43232 4.47804 4.52135 4.63339 4.66682 4.69666 4.72451 4.75953 4.82022 4.87436 4.91031 4.91296 4.93848 5.01879 5.08090 5.12840 5.14458 5.20998 5.26743 5.33401 5.36874 5.59409 5.66339 5.70109 5.93737 6.07271 6.11756 6.21080 6.26798 6.50055 6.50379 6.82813 6.93857 7.34290 8.83167 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002549 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.154200 B =10982.529609 C =11967.875366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.066 3.934 3 H 0.082 0.918 4 C -0.146 4.146 5 C -0.144 4.144 6 C 0.078 3.922 7 H 0.062 0.938 8 C 0.065 3.935 9 N -0.696 5.696 10 C 0.121 3.879 11 C -0.160 4.160 12 C -0.056 4.056 13 C -0.217 4.217 14 C 0.212 3.788 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.047 0.953 20 C 0.013 3.987 21 N -0.926 5.926 22 Si 0.961 3.039 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.274 1.274 26 C -0.217 4.217 27 C -0.063 4.063 28 O -0.400 6.400 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.093 0.907 38 H 0.343 0.657 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.010 0.990 47 H 0.011 0.989 48 H 0.267 0.733 49 H 0.133 0.867 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.900 16.494 21.815 27.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.100 0.900 4 C -0.184 4.184 5 C -0.182 4.182 6 C 0.021 3.979 7 H 0.080 0.920 8 C -0.064 4.064 9 N -0.328 5.328 10 C -0.007 4.007 11 C -0.163 4.163 12 C -0.075 4.075 13 C -0.239 4.239 14 C 0.107 3.893 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.580 4.580 19 H 0.066 0.934 20 C -0.187 4.187 21 N -0.566 5.566 22 Si 0.786 3.214 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.199 1.199 26 C -0.239 4.239 27 C -0.082 4.082 28 O -0.321 6.321 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.111 0.889 38 H 0.161 0.839 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.028 0.972 47 H 0.029 0.971 48 H 0.076 0.924 49 H 0.151 0.849 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.716 15.660 21.448 27.165 hybrid contribution -0.813 -0.085 -0.397 0.909 sum 4.903 15.575 21.051 26.641 Atomic orbital electron populations 1.22144 0.94936 1.02157 1.02660 1.22884 0.94518 0.96504 0.85177 0.89990 1.23179 0.97685 0.99946 0.97542 1.23261 0.98789 1.02009 0.94176 1.23080 0.92135 0.88736 0.93976 0.91963 1.22147 0.95361 1.00286 0.88612 1.60515 1.18786 1.51213 1.02267 1.20625 0.91707 1.00530 0.87870 1.19539 1.07427 0.92616 0.96700 1.20793 0.95773 0.96944 0.93971 1.20792 1.09092 0.98063 0.95995 1.18228 0.91586 0.94197 0.85292 1.46966 1.67765 1.07270 1.12028 1.21601 1.00338 0.89913 0.92631 1.18771 0.94688 0.78010 0.94041 1.21769 0.98760 0.97762 1.39703 0.93450 1.25777 1.02002 0.96073 0.94820 1.70029 1.37867 1.05705 1.43005 0.85506 0.79700 0.77481 0.78718 1.19474 1.20275 1.19855 1.20770 1.10102 0.93740 0.99331 1.20912 0.96097 0.99060 0.92094 1.88426 1.71129 1.40822 1.31715 0.89709 0.93107 0.93017 0.88254 0.90143 0.89540 0.88454 0.94349 0.88908 0.83906 0.93675 0.90251 0.85996 0.88675 0.92857 0.92510 0.90420 0.97197 0.97111 0.92357 0.84938 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.44 71.98 0.68 -1.74 16 2 C 0.07 1.03 4.16 31.06 0.13 1.16 16 3 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 4 C -0.15 -1.56 6.55 31.85 0.21 -1.36 16 5 C -0.14 -1.66 6.57 32.05 0.21 -1.45 16 6 C 0.08 1.42 3.69 31.26 0.12 1.54 16 7 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 8 C 0.06 1.20 5.43 86.30 0.47 1.66 16 9 N -0.70 -16.87 6.49 -517.91 -3.36 -20.23 16 10 C 0.12 2.86 5.81 85.56 0.50 3.36 16 11 C -0.16 -4.89 5.39 -19.84 -0.11 -5.00 16 12 C -0.06 -2.01 9.69 22.25 0.22 -1.79 16 13 C -0.22 -9.49 9.21 22.40 0.21 -9.29 16 14 C 0.21 9.01 6.55 38.21 0.25 9.26 16 15 N -0.63 -28.67 2.99 -726.56 -2.17 -30.84 16 16 C 0.10 3.52 10.19 127.77 1.30 4.83 16 17 C 0.27 14.40 4.91 85.63 0.42 14.82 16 18 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 19 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 20 C 0.01 0.72 5.46 84.66 0.46 1.18 16 21 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 22 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 26 C -0.22 -7.48 9.21 22.40 0.21 -7.27 16 27 C -0.06 -1.87 9.69 22.25 0.22 -1.65 16 28 O -0.40 -8.74 10.24 -148.98 -1.53 -10.26 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.83 7.85 -2.39 -0.02 0.82 16 34 H 0.09 0.87 8.06 -2.39 -0.02 0.85 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.04 0.66 8.14 -2.39 -0.02 0.65 16 37 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.34 9.07 8.30 -89.69 -0.74 8.32 16 39 H 0.05 0.93 8.08 -2.38 -0.02 0.91 16 40 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 41 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 42 H 0.10 4.77 6.14 -2.91 -0.02 4.75 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 45 H 0.08 2.39 6.20 -2.39 -0.01 2.37 16 46 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 47 H 0.01 0.64 6.20 -2.39 -0.01 0.62 16 48 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 49 H 0.13 3.96 6.14 -2.91 -0.02 3.95 16 50 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -67.11 400.04 1.13 -65.98 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.16 Total: 25.96 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 5.72 Total: -22.76 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -5.25 Total: -106.13 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.53 Total: -10.26 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -67.11 1.13 -65.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835086025.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.096 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds