Wall clock time and date at job start Tue Mar 31 2020 13:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47131 * 2 1 4 4 O 1.42902 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.35902 * 116.99896 * 180.02562 * 4 3 2 6 6 C 1.38753 * 120.05484 * 0.02562 * 5 4 3 7 7 C 1.38120 * 119.94062 * 179.68417 * 6 5 4 8 8 C 1.38293 * 120.05799 * 0.57359 * 7 6 5 9 9 C 1.50697 * 119.94346 * 179.72681 * 8 7 6 10 10 N 1.46898 * 109.47021 * 269.72227 * 9 8 7 11 11 C 1.46900 * 111.00130 * 294.30435 * 10 9 8 12 12 C 1.53238 * 109.34203 * 172.74508 * 11 10 9 13 13 N 1.47075 * 108.51979 * 53.83030 * 12 11 10 14 14 C 1.36940 * 120.88324 * 128.83802 * 13 12 11 15 15 H 1.07999 * 120.00113 * 206.55908 * 14 13 12 16 16 C 1.38817 * 119.99796 * 26.55930 * 14 13 12 17 17 N 1.31621 * 119.99998 * 17.02395 * 16 14 13 18 18 Si 1.86801 * 119.99933 * 197.03000 * 16 14 13 19 19 H 1.48500 * 109.46932 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47097 * 120.00019 * 18 16 14 21 21 H 1.48499 * 109.47084 * 239.99585 * 18 16 14 22 22 C 1.47077 * 118.23942 * 308.81680 * 13 12 11 23 23 C 1.46900 * 111.00251 * 170.00449 * 10 9 8 24 24 C 1.38247 * 120.10656 * 359.44679 * 8 7 6 25 25 C 1.38161 * 120.05663 * 0.25549 * 24 8 7 26 26 C 1.50699 * 120.02703 * 180.02562 * 25 24 8 27 27 H 1.09000 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46949 * 300.00306 * 1 2 3 29 29 H 1.09001 * 109.47031 * 60.00300 * 1 2 3 30 30 H 1.09001 * 109.47331 * 240.00046 * 2 1 3 31 31 H 1.09001 * 109.47031 * 119.99700 * 2 1 3 32 32 H 1.08993 * 109.47178 * 59.99593 * 3 2 1 33 33 H 1.09001 * 109.46918 * 299.99769 * 3 2 1 34 34 H 1.08007 * 120.02822 * 0.02562 * 6 5 4 35 35 H 1.08010 * 119.97401 * 180.31649 * 7 6 5 36 36 H 1.08991 * 109.47534 * 29.72270 * 9 8 7 37 37 H 1.08999 * 109.46811 * 149.72707 * 9 8 7 38 38 H 1.09005 * 109.49582 * 292.70649 * 11 10 9 39 39 H 1.09004 * 109.49418 * 52.78487 * 11 10 9 40 40 H 1.08996 * 109.62883 * 294.12022 * 12 11 10 41 41 H 1.08998 * 109.62934 * 173.54045 * 12 11 10 42 42 H 0.97002 * 119.99653 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.62460 * 291.47289 * 22 13 12 44 44 H 1.09000 * 109.79361 * 170.99343 * 22 13 12 45 45 H 1.09006 * 109.48641 * 307.21290 * 23 10 9 46 46 H 1.08997 * 109.49187 * 67.29349 * 23 10 9 47 47 H 1.07997 * 119.96740 * 180.27493 * 24 8 7 48 48 H 1.09000 * 109.47401 * 89.99906 * 26 25 24 49 49 H 1.08994 * 109.47391 * 210.00002 * 26 25 24 50 50 H 1.08997 * 109.47123 * 330.00324 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0860 2.6535 -0.0001 6 6 3.3314 3.8178 0.0014 7 6 3.9608 5.0472 0.0085 8 6 5.3419 5.1183 0.0020 9 6 6.0260 6.4611 0.0035 10 7 6.2475 6.8993 -1.3810 11 6 7.1989 6.0151 -2.0672 12 6 7.2645 6.3937 -3.5506 13 7 7.5649 7.8298 -3.6534 14 6 8.5871 8.2791 -4.4460 15 1 9.0801 9.2118 -4.2146 16 6 8.9898 7.5358 -5.5471 17 7 8.2039 6.5970 -6.0304 18 14 10.6469 7.8678 -6.3428 19 1 11.3339 8.9656 -5.6159 20 1 11.4786 6.6390 -6.2854 21 1 10.4453 8.2632 -7.7599 22 6 6.7379 8.7706 -2.8825 23 6 6.6931 8.2984 -1.4255 24 6 6.0960 3.9596 0.0000 25 6 5.4711 2.7274 -0.0008 26 6 6.2937 1.4647 -0.0024 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2527 3.7629 0.0027 35 1 3.3739 5.9540 0.0149 36 1 5.3983 7.1881 0.5187 37 1 6.9842 6.3800 0.5167 38 1 8.1866 6.1259 -1.6195 39 1 6.8692 4.9806 -1.9701 40 1 6.3052 6.1855 -4.0244 41 1 8.0505 5.8192 -4.0408 42 1 8.4855 6.0774 -6.7996 43 1 5.7280 8.7909 -3.2922 44 1 7.1725 9.7691 -2.9307 45 1 5.9964 8.9200 -0.8629 46 1 7.6877 8.3775 -0.9867 47 1 7.1744 4.0178 -0.0005 48 1 6.4925 1.1593 1.0248 49 1 5.7461 0.6750 -0.5167 50 1 7.2375 1.6466 -0.5165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876677283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:11 Heat of formation + Delta-G solvation = -11.809860 kcal Electronic energy + Delta-G solvation = -26914.774048 eV Core-core repulsion = 23327.749397 eV Total energy + Delta-G solvation = -3587.024650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31284 -39.85743 -38.52206 -36.21399 -34.84841 -33.79182 -33.26316 -31.66170 -31.38622 -28.75419 -27.92715 -27.38460 -25.89240 -24.28821 -24.00037 -23.50303 -21.91271 -21.37267 -20.76310 -18.96408 -18.71882 -17.25847 -17.21949 -17.00674 -16.39838 -16.20646 -15.67358 -15.41159 -15.34157 -15.20411 -15.11605 -14.91893 -14.77377 -14.26144 -14.13227 -14.02319 -13.48834 -13.33485 -13.19332 -13.03362 -12.98059 -12.85708 -12.71748 -12.63706 -12.37626 -12.19876 -12.14700 -12.08026 -11.99039 -11.85778 -11.59858 -11.56695 -11.45167 -11.36726 -10.60179 -9.72177 -9.25669 -8.94098 -8.67324 -7.87668 -5.32713 0.40858 0.46298 1.45327 1.46554 1.57689 2.25066 2.50224 2.67667 3.23557 3.29437 3.69347 3.80754 3.86105 3.92308 3.95658 4.02067 4.26275 4.29931 4.30393 4.35897 4.37506 4.42981 4.55544 4.55810 4.56954 4.66523 4.68469 4.70562 4.78860 4.80583 4.81895 4.84487 4.91459 4.99844 5.05819 5.11888 5.18455 5.19584 5.30675 5.34590 5.36936 5.40906 5.49036 5.60656 5.66685 5.72949 5.88278 6.20951 6.29141 6.37396 6.49714 7.12445 7.83481 8.38205 9.19240 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002724 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.868144 B =10278.302814 C =10834.223084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.051 3.949 4 O -0.326 6.326 5 C 0.114 3.886 6 C -0.208 4.208 7 C -0.071 4.071 8 C -0.115 4.115 9 C 0.100 3.900 10 N -0.537 5.537 11 C 0.054 3.946 12 C 0.189 3.811 13 N -0.615 5.615 14 C -0.262 4.262 15 H 0.069 0.931 16 C -0.055 4.055 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.290 1.290 21 H -0.292 1.292 22 C 0.143 3.857 23 C 0.055 3.945 24 C -0.085 4.085 25 C -0.133 4.133 26 C -0.100 4.100 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.018 0.982 39 H 0.074 0.926 40 H -0.008 1.008 41 H 0.054 0.946 42 H 0.250 0.750 43 H 0.014 0.986 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.025 0.975 47 H 0.126 0.874 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.795 -10.111 17.853 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.023 4.023 4 O -0.241 6.241 5 C 0.068 3.932 6 C -0.226 4.226 7 C -0.089 4.089 8 C -0.115 4.115 9 C -0.026 4.026 10 N -0.262 5.262 11 C -0.075 4.075 12 C 0.063 3.937 13 N -0.339 5.339 14 C -0.392 4.392 15 H 0.087 0.913 16 C -0.250 4.250 17 N -0.583 5.583 18 Si 0.797 3.203 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.219 1.219 22 C 0.018 3.982 23 C -0.074 4.074 24 C -0.103 4.103 25 C -0.134 4.134 26 C -0.156 4.156 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.117 0.883 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.092 0.908 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.043 0.957 47 H 0.144 0.856 48 H 0.095 0.905 49 H 0.083 0.917 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.128 -10.394 17.479 24.205 hybrid contribution 1.411 0.260 -0.639 1.571 sum -11.717 -10.134 16.840 22.881 Atomic orbital electron populations 1.21684 0.92878 1.03202 1.02637 1.21487 0.97107 0.93795 1.03384 1.23094 0.77335 0.99931 1.01980 1.86007 1.22587 1.26769 1.88702 1.18922 0.91893 0.84674 0.97678 1.21402 1.00779 0.91900 1.08548 1.20981 0.93744 0.97699 0.96509 1.19738 0.94152 0.94537 1.03107 1.21018 0.98902 0.93877 0.88834 1.61925 1.46713 1.02498 1.15074 1.22560 0.92510 0.96689 0.95758 1.20559 0.96884 0.84813 0.91457 1.44430 1.35592 1.01874 1.51984 1.19583 1.08388 1.07116 1.04086 0.91297 1.25836 1.02098 1.00010 0.97027 1.70216 1.36555 1.26549 1.24998 0.85178 0.79875 0.77522 0.77700 1.18973 1.21648 1.21873 1.21142 0.93388 0.93037 0.90675 1.22490 0.98388 0.89017 0.97471 1.20909 0.99851 0.91020 0.98564 1.19447 0.91214 0.96552 1.06202 1.20578 0.98666 0.93748 1.02654 0.90896 0.91711 0.92211 0.91460 0.90848 0.91032 0.91940 0.83726 0.84376 0.88316 0.94275 0.96364 0.90778 0.99031 0.92726 0.94136 0.96779 0.91917 0.88303 0.95676 0.85586 0.90513 0.91658 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.59 6.30 30.60 0.19 -1.40 16 3 C 0.05 0.86 4.74 71.98 0.34 1.20 16 4 O -0.33 -7.72 9.18 -92.45 -0.85 -8.56 16 5 C 0.11 2.96 6.66 22.51 0.15 3.11 16 6 C -0.21 -4.95 9.04 22.36 0.20 -4.74 16 7 C -0.07 -1.78 9.69 22.25 0.22 -1.56 16 8 C -0.11 -3.15 4.89 -19.85 -0.10 -3.24 16 9 C 0.10 2.75 5.12 85.56 0.44 3.18 16 10 N -0.54 -18.92 4.62 -899.84 -4.16 -23.08 16 11 C 0.05 2.21 5.33 86.38 0.46 2.67 16 12 C 0.19 9.79 5.42 86.35 0.47 10.26 16 13 N -0.61 -32.46 3.04 -698.15 -2.12 -34.58 16 14 C -0.26 -14.84 9.63 84.03 0.81 -14.03 16 15 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 16 C -0.05 -3.14 4.94 84.86 0.42 -2.73 16 17 N -0.94 -57.31 11.15 21.65 0.24 -57.07 16 18 Si 0.97 45.86 29.59 68.60 2.03 47.89 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 C 0.14 6.16 6.69 86.35 0.58 6.74 16 23 C 0.06 1.90 5.62 86.38 0.49 2.39 16 24 C -0.08 -2.34 7.51 22.25 0.17 -2.18 16 25 C -0.13 -3.58 5.89 -19.77 -0.12 -3.70 16 26 C -0.10 -2.27 9.79 71.24 0.70 -1.57 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 33 H 0.06 1.03 7.67 -2.39 -0.02 1.01 16 34 H 0.15 2.69 6.30 -2.91 -0.02 2.68 16 35 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.10 2.24 7.91 -2.39 -0.02 2.22 16 37 H 0.04 1.05 8.07 -2.39 -0.02 1.03 16 38 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.07 2.88 5.65 -2.38 -0.01 2.87 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.05 3.16 6.12 -2.39 -0.01 3.14 16 42 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 45 H 0.10 2.69 7.99 -2.38 -0.02 2.67 16 46 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.13 3.34 7.93 -2.91 -0.02 3.31 16 48 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 49 H 0.06 1.50 7.53 -2.39 -0.02 1.48 16 50 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 Total: -1.00 -68.25 390.62 2.16 -66.09 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.89 Total: 15.58 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 6.12 Total: -6.27 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -6.04 Total: -114.73 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.85 Total: -8.56 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -68.25 2.16 -66.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876677283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.281 kcal (2) G-P(sol) polarization free energy of solvation -68.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds