Wall clock time and date at job start Tue Mar 31 2020 12:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47243 * 2 1 4 4 H 1.08997 * 109.46927 * 54.72871 * 3 2 1 5 5 C 1.50699 * 109.47585 * 174.73141 * 3 2 1 6 6 H 1.07992 * 120.00296 * 120.16801 * 5 3 2 7 7 C 1.37883 * 119.99529 * 300.17240 * 5 3 2 8 8 N 1.31513 * 119.99325 * 166.66178 * 7 5 3 9 9 Si 1.86795 * 120.00333 * 346.66564 * 7 5 3 10 10 H 1.48498 * 109.47097 * 264.65918 * 9 7 5 11 11 H 1.48495 * 109.47255 * 24.66086 * 9 7 5 12 12 H 1.48500 * 109.47291 * 144.66235 * 9 7 5 13 13 N 1.46896 * 109.46886 * 294.73305 * 3 2 1 14 14 C 1.46897 * 111.00286 * 101.69574 * 13 3 2 15 15 C 1.50695 * 109.47572 * 183.23234 * 14 13 3 16 16 C 1.38289 * 119.92795 * 269.72963 * 15 14 13 17 17 C 1.38101 * 120.07361 * 179.72313 * 16 15 14 18 18 C 1.38910 * 119.92673 * 0.54513 * 17 16 15 19 19 N 1.39674 * 120.07591 * 179.70300 * 18 17 16 20 20 C 1.46847 * 110.99929 * 124.23070 * 19 18 17 21 21 C 1.53037 * 109.52476 * 174.15986 * 20 19 18 22 22 C 1.53118 * 109.27643 * 59.18194 * 21 20 19 23 23 O 1.42897 * 109.52643 * 182.44173 * 22 21 20 24 24 C 1.53124 * 109.16024 * 302.34473 * 22 21 20 25 25 C 1.46843 * 111.00088 * 0.02562 * 19 18 17 26 26 C 1.38911 * 119.85071 * 359.72528 * 18 17 16 27 27 C 1.38101 * 119.92631 * 0.02562 * 26 18 17 28 28 H 1.08993 * 109.47290 * 306.72520 * 1 2 3 29 29 H 1.09001 * 109.46919 * 66.72780 * 1 2 3 30 30 H 1.09001 * 109.46935 * 186.72470 * 1 2 3 31 31 H 1.08999 * 109.47683 * 240.00238 * 2 1 3 32 32 H 1.08999 * 109.47815 * 119.99864 * 2 1 3 33 33 H 0.97010 * 119.99838 * 179.97438 * 8 7 5 34 34 H 1.00909 * 110.99953 * 225.64646 * 13 3 2 35 35 H 1.09004 * 109.47105 * 303.23374 * 14 13 3 36 36 H 1.09006 * 109.47564 * 63.22952 * 14 13 3 37 37 H 1.07999 * 119.95897 * 359.97438 * 16 15 14 38 38 H 1.08003 * 120.03766 * 180.26804 * 17 16 15 39 39 H 1.08997 * 109.46482 * 294.17951 * 20 19 18 40 40 H 1.09002 * 109.45970 * 54.14702 * 20 19 18 41 41 H 1.08995 * 109.50553 * 299.24284 * 21 20 19 42 42 H 1.09002 * 109.53631 * 179.14019 * 21 20 19 43 43 H 1.09000 * 109.57742 * 62.27855 * 22 21 20 44 44 H 0.96699 * 113.99767 * 299.68368 * 23 22 21 45 45 H 1.08994 * 109.50324 * 297.71041 * 24 22 21 46 46 H 1.09002 * 109.53219 * 177.61341 * 24 22 21 47 47 H 1.09003 * 109.46349 * 305.85568 * 25 19 18 48 48 H 1.09009 * 109.46129 * 65.83281 * 25 19 18 49 49 H 1.08003 * 120.03713 * 180.02562 * 26 18 17 50 50 H 1.07997 * 119.96946 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6016 1.9829 0.8390 5 6 3.5413 1.4446 0.1305 6 1 4.1499 1.8904 -0.6423 7 6 4.1379 0.8773 1.2365 8 7 5.4316 0.6407 1.2369 9 14 3.1088 0.4447 2.7342 10 1 3.1746 1.5554 3.7176 11 1 1.6983 0.2323 2.3210 12 1 3.6352 -0.7975 3.3546 13 7 1.6569 2.0973 -1.2579 14 6 0.4936 2.9728 -1.0628 15 6 0.0818 3.5637 -2.3865 16 6 0.6208 4.7675 -2.8021 17 6 0.2499 5.3090 -4.0172 18 6 -0.6742 4.6487 -4.8170 19 7 -1.0562 5.1966 -6.0437 20 6 -0.8282 4.2453 -7.1389 21 6 -1.3901 4.8202 -8.4411 22 6 -0.6991 6.1523 -8.7452 23 8 -1.2598 6.7217 -9.9298 24 6 -0.9110 7.1086 -7.5682 25 6 -0.3630 6.4672 -6.2913 26 6 -1.2179 3.4425 -4.3939 27 6 -0.8388 2.9040 -3.1801 28 1 -0.3633 0.6145 0.8236 29 1 -0.3633 0.4060 -0.9441 30 1 -0.3633 -1.0206 0.1203 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8515 0.2419 2.0152 34 1 2.4330 2.6093 -1.6501 35 1 -0.3325 2.3929 -0.6510 36 1 0.7541 3.7748 -0.3721 37 1 1.3356 5.2827 -2.1776 38 1 0.6744 6.2470 -4.3433 39 1 0.2418 4.0702 -7.2510 40 1 -1.3283 3.3037 -6.9120 41 1 -2.4626 4.9826 -8.3343 42 1 -1.2074 4.1209 -9.2570 43 1 0.3681 5.9853 -8.8912 44 1 -1.1615 6.1683 -10.7167 45 1 -1.9759 7.3070 -7.4477 46 1 -0.3858 8.0443 -7.7597 47 1 -0.5251 7.1396 -5.4488 48 1 0.7049 6.2817 -6.4076 49 1 -1.9363 2.9263 -5.0136 50 1 -1.2613 1.9664 -2.8502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877365416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:55 Heat of formation + Delta-G solvation = -18.126460 kcal Electronic energy + Delta-G solvation = -26575.228712 eV Core-core repulsion = 22987.930153 eV Total energy + Delta-G solvation = -3587.298559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.57191 -38.67166 -37.02003 -36.07048 -33.26293 -32.15736 -31.85011 -31.33169 -30.47817 -29.15224 -27.04117 -24.80124 -24.24477 -23.22368 -22.33439 -21.85534 -20.81170 -19.99767 -19.64850 -17.90058 -17.46335 -16.95508 -15.85915 -15.57307 -15.26438 -15.06348 -14.90356 -14.60564 -14.25452 -14.08629 -13.79314 -13.66850 -13.40273 -13.05903 -12.91975 -12.75895 -12.54428 -12.37008 -12.20648 -12.02301 -11.74159 -11.64755 -11.59399 -11.40477 -11.29695 -10.97934 -10.81471 -10.66778 -10.59983 -10.25075 -10.20952 -9.84960 -9.65821 -9.19898 -9.06661 -8.80068 -8.48475 -7.77969 -7.41902 -6.14484 -4.10921 1.46658 1.54640 3.25674 3.36003 3.39095 3.42944 3.73457 3.93000 4.33818 4.35999 4.38730 4.66344 4.74528 4.87555 4.94816 5.01341 5.08595 5.11117 5.17522 5.18416 5.32824 5.34404 5.44627 5.46305 5.51561 5.58409 5.62084 5.71824 5.80022 5.90161 5.91383 6.04230 6.06955 6.15274 6.19077 6.26763 6.29887 6.47171 6.66910 6.75129 6.79816 6.89712 6.93004 7.02138 7.04054 7.21682 7.29756 7.44803 7.62970 7.98390 8.35040 8.58970 8.93062 9.50783 10.98388 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.002315 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.381842 B =12090.336070 C =12408.069812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.191 3.809 4 H 0.003 0.997 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.861 3.139 10 H -0.284 1.284 11 H -0.242 1.242 12 H -0.287 1.287 13 N -0.673 5.673 14 C 0.093 3.907 15 C -0.087 4.087 16 C -0.089 4.089 17 C -0.170 4.170 18 C 0.098 3.902 19 N -0.489 5.489 20 C 0.060 3.940 21 C -0.150 4.150 22 C 0.102 3.898 23 O -0.567 6.567 24 C -0.111 4.111 25 C 0.053 3.947 26 C -0.140 4.140 27 C -0.076 4.076 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.339 0.661 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.378 0.622 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.120 0.880 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.626 9.664 -17.743 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.083 3.917 4 H 0.021 0.979 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.127 4.127 8 N -0.529 5.529 9 Si 0.688 3.312 10 H -0.211 1.211 11 H -0.166 1.166 12 H -0.213 1.213 13 N -0.304 5.304 14 C -0.036 4.036 15 C -0.088 4.088 16 C -0.108 4.108 17 C -0.190 4.190 18 C 0.001 3.999 19 N -0.205 5.205 20 C -0.066 4.066 21 C -0.188 4.188 22 C 0.043 3.957 23 O -0.373 6.373 24 C -0.149 4.149 25 C -0.074 4.074 26 C -0.161 4.161 27 C -0.095 4.095 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.157 0.843 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.225 0.775 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.108 0.892 48 H 0.066 0.934 49 H 0.138 0.862 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.503 9.645 -17.487 25.282 hybrid contribution 1.006 -0.172 1.013 1.438 sum -14.497 9.474 -16.474 23.902 Atomic orbital electron populations 1.21854 0.98612 0.99376 1.00590 1.21979 0.92821 0.99401 1.00949 1.19459 0.95372 0.90767 0.86143 0.97924 1.21252 0.89431 1.39352 1.07007 0.90728 1.24920 0.94770 0.94375 0.98600 1.69974 1.10511 1.42612 1.29830 0.87338 0.82722 0.77985 0.83166 1.21073 1.16558 1.21280 1.60612 1.07924 1.32626 1.29271 1.21019 0.95986 0.94979 0.91657 1.19952 0.97065 0.94434 0.97387 1.20954 0.98749 0.95420 0.95674 1.21189 0.99149 1.01862 0.96843 1.18793 0.94996 0.94654 0.91449 1.59101 1.55676 1.04569 1.01144 1.22162 0.99766 0.95285 0.89386 1.22361 1.02330 0.97142 0.97009 1.21885 0.95755 0.92545 0.85515 1.86519 1.82644 1.49239 1.18873 1.21566 1.03341 0.98067 0.91896 1.22227 0.96193 0.90883 0.98059 1.20702 1.01958 0.95785 0.97621 1.20894 0.96467 0.98851 0.93262 0.94359 0.92692 0.94706 0.92280 0.92882 0.92660 0.84265 0.90704 0.95305 0.86177 0.86017 0.93695 0.89543 0.90027 0.90909 0.92812 0.77533 0.90159 0.90462 0.89202 0.93438 0.86231 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.64 37.15 0.32 -2.34 16 2 C -0.11 -2.47 4.73 -26.73 -0.13 -2.60 16 3 C 0.19 4.40 1.76 -68.86 -0.12 4.28 16 4 H 0.00 0.07 6.67 -51.93 -0.35 -0.27 16 5 C -0.53 -14.59 9.11 -34.44 -0.31 -14.91 16 6 H 0.07 2.21 7.65 -52.49 -0.40 1.81 16 7 C 0.08 2.16 5.35 -17.82 -0.10 2.07 16 8 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 9 Si 0.86 20.85 25.68 -169.99 -4.37 16.48 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.24 -5.46 5.15 56.52 0.29 -5.17 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.67 -13.43 6.08 -109.22 -0.66 -14.10 16 14 C 0.09 1.56 5.18 -4.98 -0.03 1.54 16 15 C -0.09 -1.29 5.42 -104.58 -0.57 -1.86 16 16 C -0.09 -1.22 9.69 -39.61 -0.38 -1.61 16 17 C -0.17 -2.09 8.82 -39.38 -0.35 -2.44 16 18 C 0.10 1.18 5.64 -83.79 -0.47 0.71 16 19 N -0.49 -5.00 4.70 -171.15 -0.80 -5.80 16 20 C 0.06 0.52 5.26 -3.83 -0.02 0.50 16 21 C -0.15 -1.06 5.72 -26.65 -0.15 -1.21 16 22 C 0.10 0.76 3.54 -26.61 -0.09 0.67 16 23 O -0.57 -4.37 13.32 -35.23 -0.47 -4.84 16 24 C -0.11 -0.89 5.75 -26.65 -0.15 -1.04 16 25 C 0.05 0.47 4.15 -3.84 -0.02 0.45 16 26 C -0.14 -1.74 9.16 -39.38 -0.36 -2.10 16 27 C -0.08 -1.03 9.69 -39.61 -0.38 -1.42 16 28 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.05 0.93 6.89 -51.93 -0.36 0.57 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.05 1.22 4.10 -51.93 -0.21 1.00 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.34 7.01 7.93 -39.29 -0.31 6.70 16 35 H 0.07 1.23 6.00 -51.93 -0.31 0.92 16 36 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.12 1.27 5.81 -52.48 -0.30 0.96 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.74 6.70 -51.93 -0.35 0.39 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.38 1.34 9.09 45.56 0.41 1.76 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.77 6.98 -51.93 -0.36 0.40 16 48 H 0.05 0.41 7.74 -51.92 -0.40 0.01 16 49 H 0.12 1.28 7.15 -52.48 -0.38 0.90 16 50 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -30.91 379.14 -10.76 -41.67 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.63 Total: 8.31 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.31 Total: -21.31 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.69 Total: -46.03 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.47 Total: -4.84 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.37 Total: 16.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.91 -10.76 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877365416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.545 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds