Wall clock time and date at job start Tue Mar 31 2020 12:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47243 * 2 1 4 4 H 1.08997 * 109.46927 * 54.72871 * 3 2 1 5 5 C 1.50699 * 109.47585 * 174.73141 * 3 2 1 6 6 H 1.07992 * 120.00296 * 120.16801 * 5 3 2 7 7 C 1.37883 * 119.99529 * 300.17240 * 5 3 2 8 8 N 1.31513 * 119.99325 * 166.66178 * 7 5 3 9 9 Si 1.86795 * 120.00333 * 346.66564 * 7 5 3 10 10 H 1.48498 * 109.47097 * 264.65918 * 9 7 5 11 11 H 1.48495 * 109.47255 * 24.66086 * 9 7 5 12 12 H 1.48500 * 109.47291 * 144.66235 * 9 7 5 13 13 N 1.46896 * 109.46886 * 294.73305 * 3 2 1 14 14 C 1.46897 * 111.00286 * 101.69574 * 13 3 2 15 15 C 1.50695 * 109.47572 * 183.23234 * 14 13 3 16 16 C 1.38289 * 119.92795 * 269.72963 * 15 14 13 17 17 C 1.38101 * 120.07361 * 179.72313 * 16 15 14 18 18 C 1.38910 * 119.92673 * 0.54513 * 17 16 15 19 19 N 1.39674 * 120.07591 * 179.70300 * 18 17 16 20 20 C 1.46847 * 110.99929 * 124.23070 * 19 18 17 21 21 C 1.53037 * 109.52476 * 174.15986 * 20 19 18 22 22 C 1.53118 * 109.27643 * 59.18194 * 21 20 19 23 23 O 1.42897 * 109.52643 * 182.44173 * 22 21 20 24 24 C 1.53124 * 109.16024 * 302.34473 * 22 21 20 25 25 C 1.46843 * 111.00088 * 0.02562 * 19 18 17 26 26 C 1.38911 * 119.85071 * 359.72528 * 18 17 16 27 27 C 1.38101 * 119.92631 * 0.02562 * 26 18 17 28 28 H 1.08993 * 109.47290 * 306.72520 * 1 2 3 29 29 H 1.09001 * 109.46919 * 66.72780 * 1 2 3 30 30 H 1.09001 * 109.46935 * 186.72470 * 1 2 3 31 31 H 1.08999 * 109.47683 * 240.00238 * 2 1 3 32 32 H 1.08999 * 109.47815 * 119.99864 * 2 1 3 33 33 H 0.97010 * 119.99838 * 179.97438 * 8 7 5 34 34 H 1.00909 * 110.99953 * 225.64646 * 13 3 2 35 35 H 1.09004 * 109.47105 * 303.23374 * 14 13 3 36 36 H 1.09006 * 109.47564 * 63.22952 * 14 13 3 37 37 H 1.07999 * 119.95897 * 359.97438 * 16 15 14 38 38 H 1.08003 * 120.03766 * 180.26804 * 17 16 15 39 39 H 1.08997 * 109.46482 * 294.17951 * 20 19 18 40 40 H 1.09002 * 109.45970 * 54.14702 * 20 19 18 41 41 H 1.08995 * 109.50553 * 299.24284 * 21 20 19 42 42 H 1.09002 * 109.53631 * 179.14019 * 21 20 19 43 43 H 1.09000 * 109.57742 * 62.27855 * 22 21 20 44 44 H 0.96699 * 113.99767 * 299.68368 * 23 22 21 45 45 H 1.08994 * 109.50324 * 297.71041 * 24 22 21 46 46 H 1.09002 * 109.53219 * 177.61341 * 24 22 21 47 47 H 1.09003 * 109.46349 * 305.85568 * 25 19 18 48 48 H 1.09009 * 109.46129 * 65.83281 * 25 19 18 49 49 H 1.08003 * 120.03713 * 180.02562 * 26 18 17 50 50 H 1.07997 * 119.96946 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6016 1.9829 0.8390 5 6 3.5413 1.4446 0.1305 6 1 4.1499 1.8904 -0.6423 7 6 4.1379 0.8773 1.2365 8 7 5.4316 0.6407 1.2369 9 14 3.1088 0.4447 2.7342 10 1 3.1746 1.5554 3.7176 11 1 1.6983 0.2323 2.3210 12 1 3.6352 -0.7975 3.3546 13 7 1.6569 2.0973 -1.2579 14 6 0.4936 2.9728 -1.0628 15 6 0.0818 3.5637 -2.3865 16 6 0.6208 4.7675 -2.8021 17 6 0.2499 5.3090 -4.0172 18 6 -0.6742 4.6487 -4.8170 19 7 -1.0562 5.1966 -6.0437 20 6 -0.8282 4.2453 -7.1389 21 6 -1.3901 4.8202 -8.4411 22 6 -0.6991 6.1523 -8.7452 23 8 -1.2598 6.7217 -9.9298 24 6 -0.9110 7.1086 -7.5682 25 6 -0.3630 6.4672 -6.2913 26 6 -1.2179 3.4425 -4.3939 27 6 -0.8388 2.9040 -3.1801 28 1 -0.3633 0.6145 0.8236 29 1 -0.3633 0.4060 -0.9441 30 1 -0.3633 -1.0206 0.1203 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8515 0.2419 2.0152 34 1 2.4330 2.6093 -1.6501 35 1 -0.3325 2.3929 -0.6510 36 1 0.7541 3.7748 -0.3721 37 1 1.3356 5.2827 -2.1776 38 1 0.6744 6.2470 -4.3433 39 1 0.2418 4.0702 -7.2510 40 1 -1.3283 3.3037 -6.9120 41 1 -2.4626 4.9826 -8.3343 42 1 -1.2074 4.1209 -9.2570 43 1 0.3681 5.9853 -8.8912 44 1 -1.1615 6.1683 -10.7167 45 1 -1.9759 7.3070 -7.4477 46 1 -0.3858 8.0443 -7.7597 47 1 -0.5251 7.1396 -5.4488 48 1 0.7049 6.2817 -6.4076 49 1 -1.9363 2.9263 -5.0136 50 1 -1.2613 1.9664 -2.8502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877365416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:54 Heat of formation + Delta-G solvation = -40.164604 kcal Electronic energy + Delta-G solvation = -26576.184358 eV Core-core repulsion = 22987.930153 eV Total energy + Delta-G solvation = -3588.254204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40075 -39.56201 -38.25312 -37.16833 -34.68698 -33.77014 -32.64237 -32.60221 -31.35425 -30.44408 -28.62783 -25.89274 -25.06199 -24.45614 -23.83900 -22.73005 -21.74800 -21.45757 -20.73848 -19.06255 -18.53575 -18.13273 -17.32648 -16.69126 -16.24008 -15.99576 -15.83574 -15.63867 -15.48977 -15.28785 -14.96776 -14.84554 -14.67412 -14.37158 -14.18944 -13.86277 -13.75605 -13.58574 -13.31289 -13.08725 -12.89104 -12.84751 -12.66702 -12.56415 -12.41784 -12.26901 -12.22401 -12.00335 -11.75185 -11.59000 -11.29676 -11.14436 -10.92150 -10.80449 -10.60677 -10.53660 -9.80257 -9.09371 -8.67803 -8.32960 -6.33776 0.44517 0.54253 1.33379 1.38218 1.48136 2.34311 2.60273 2.92101 3.02636 3.23837 3.71350 3.72529 3.76172 3.93645 4.05803 4.10036 4.11890 4.15103 4.25509 4.38398 4.44742 4.49665 4.52426 4.55428 4.56035 4.65963 4.70561 4.71835 4.73802 4.81657 4.85017 4.88089 4.93852 5.04640 5.11269 5.19221 5.22277 5.27926 5.30313 5.36247 5.41697 5.45139 5.57534 5.78206 5.84653 5.86147 6.02569 6.05768 6.36318 6.49420 6.66766 6.86013 6.86802 7.32354 8.83420 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.002315 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.381842 B =12090.336070 C =12408.069812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.197 3.803 4 H 0.003 0.997 5 C -0.537 4.537 6 H 0.035 0.965 7 C 0.018 3.982 8 N -0.942 5.942 9 Si 0.924 3.076 10 H -0.283 1.283 11 H -0.213 1.213 12 H -0.286 1.286 13 N -0.672 5.672 14 C 0.098 3.902 15 C -0.107 4.107 16 C -0.098 4.098 17 C -0.174 4.174 18 C 0.102 3.898 19 N -0.494 5.494 20 C 0.058 3.942 21 C -0.142 4.142 22 C 0.102 3.898 23 O -0.583 6.583 24 C -0.109 4.109 25 C 0.053 3.947 26 C -0.143 4.143 27 C -0.080 4.080 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.265 0.735 34 H 0.331 0.669 35 H 0.083 0.917 36 H 0.023 0.977 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.042 0.958 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.395 0.605 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.050 0.950 49 H 0.137 0.863 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 9.669 -18.639 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C 0.087 3.913 4 H 0.021 0.979 5 C -0.575 4.575 6 H 0.053 0.947 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.748 3.252 10 H -0.209 1.209 11 H -0.135 1.135 12 H -0.212 1.212 13 N -0.302 5.302 14 C -0.031 4.031 15 C -0.108 4.108 16 C -0.117 4.117 17 C -0.195 4.195 18 C 0.004 3.996 19 N -0.209 5.209 20 C -0.068 4.068 21 C -0.180 4.180 22 C 0.043 3.957 23 O -0.391 6.391 24 C -0.147 4.147 25 C -0.074 4.074 26 C -0.164 4.164 27 C -0.099 4.099 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.101 0.899 36 H 0.041 0.959 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.245 0.755 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.109 0.891 48 H 0.069 0.931 49 H 0.155 0.845 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.110 9.658 -18.422 27.579 hybrid contribution 1.837 -0.077 1.103 2.144 sum -16.273 9.581 -17.319 25.623 Atomic orbital electron populations 1.21762 0.95202 1.01098 1.01532 1.21894 0.95844 0.97728 0.99778 1.19335 0.92258 0.92204 0.87481 0.97948 1.21582 0.91856 1.38199 1.05835 0.94711 1.25807 0.95860 0.94521 1.01809 1.70115 1.12647 1.44481 1.30918 0.86324 0.82526 0.77528 0.78818 1.20909 1.13507 1.21241 1.60617 1.08469 1.33578 1.27506 1.21002 0.94632 0.94374 0.93060 1.19803 0.98675 0.95316 0.97045 1.21044 0.98900 0.95401 0.96372 1.21377 0.99199 1.02577 0.96324 1.18987 0.94141 0.94348 0.92103 1.59122 1.55618 1.05288 1.00907 1.22238 0.99778 0.95209 0.89547 1.22302 1.01522 0.97391 0.96757 1.21859 0.96110 0.92359 0.85326 1.86479 1.82748 1.50191 1.19700 1.21535 1.02628 0.98568 0.91946 1.22263 0.96253 0.90275 0.98561 1.20890 1.02143 0.95967 0.97351 1.21003 0.96209 0.99094 0.93576 0.93606 0.91669 0.92552 0.93649 0.93961 0.92590 0.85188 0.89885 0.95891 0.86283 0.84341 0.93945 0.89274 0.90868 0.88801 0.92207 0.75510 0.91226 0.89825 0.89114 0.93148 0.84477 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.64 71.98 0.62 -3.95 16 2 C -0.11 -4.82 4.73 30.59 0.14 -4.67 16 3 C 0.20 8.99 1.76 44.17 0.08 9.07 16 4 H 0.00 0.13 6.67 -2.39 -0.02 0.12 16 5 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 6 H 0.03 2.18 7.65 -2.91 -0.02 2.15 16 7 C 0.02 1.06 5.35 84.66 0.45 1.51 16 8 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 9 Si 0.92 43.03 25.68 68.60 1.76 44.79 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.21 -8.84 5.15 99.48 0.51 -8.33 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 13 N -0.67 -26.80 6.08 -499.47 -3.04 -29.84 16 14 C 0.10 3.22 5.18 85.56 0.44 3.66 16 15 C -0.11 -3.10 5.42 -19.84 -0.11 -3.20 16 16 C -0.10 -2.65 9.69 22.25 0.22 -2.43 16 17 C -0.17 -4.09 8.82 22.40 0.20 -3.89 16 18 C 0.10 2.29 5.64 38.21 0.22 2.50 16 19 N -0.49 -9.18 4.70 -695.39 -3.27 -12.45 16 20 C 0.06 0.88 5.26 86.33 0.45 1.34 16 21 C -0.14 -1.67 5.72 30.65 0.18 -1.50 16 22 C 0.10 1.31 3.54 30.68 0.11 1.42 16 23 O -0.58 -7.78 13.32 -148.98 -1.99 -9.76 16 24 C -0.11 -1.58 5.75 30.65 0.18 -1.40 16 25 C 0.05 0.84 4.15 86.33 0.36 1.20 16 26 C -0.14 -3.28 9.16 22.40 0.21 -3.07 16 27 C -0.08 -2.06 9.69 22.25 0.22 -1.84 16 28 H 0.04 1.44 8.08 -2.39 -0.02 1.42 16 29 H 0.06 2.01 6.89 -2.39 -0.02 1.99 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.86 4.10 -2.39 -0.01 1.85 16 33 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 34 H 0.33 14.09 7.93 -89.69 -0.71 13.38 16 35 H 0.08 2.57 6.00 -2.38 -0.01 2.56 16 36 H 0.02 0.78 8.08 -2.38 -0.02 0.76 16 37 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.14 2.69 5.81 -2.91 -0.02 2.67 16 39 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 1.32 6.70 -2.39 -0.02 1.30 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.39 1.90 9.09 -74.06 -0.67 1.22 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.09 1.41 6.98 -2.39 -0.02 1.39 16 48 H 0.05 0.78 7.74 -2.38 -0.02 0.76 16 49 H 0.14 2.59 7.15 -2.91 -0.02 2.57 16 50 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -67.52 379.14 -2.68 -70.19 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.64 Total: 30.72 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 4.19 Total: -35.28 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -6.01 Total: -100.66 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -1.99 Total: -9.76 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.76 Total: 44.79 kcal Total: -67.52 -2.68 -70.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877365416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.030 kcal (2) G-P(sol) polarization free energy of solvation -67.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds