Wall clock time and date at job start Tue Mar 31 2020 13:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47071 * 2 1 4 4 O 1.21297 * 119.99863 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00107 * 180.02562 * 3 2 1 6 6 C 1.46500 * 119.99694 * 5.28120 * 5 3 2 7 7 C 1.40151 * 120.00234 * 185.27897 * 5 3 2 8 8 C 1.38846 * 119.99541 * 292.83822 * 7 5 3 9 9 C 1.38059 * 120.00671 * 180.02562 * 8 7 5 10 10 C 1.38888 * 119.99492 * 359.97438 * 9 8 7 11 11 N 1.39895 * 120.00596 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99899 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47108 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47027 * 300.00138 * 13 12 11 15 15 C 1.53008 * 109.47209 * 59.99942 * 13 12 11 16 16 C 1.52995 * 109.47238 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.47344 * 180.02562 * 16 13 12 18 18 H 1.08001 * 119.99821 * 359.97438 * 17 16 13 19 19 C 1.37873 * 120.00079 * 180.02562 * 17 16 13 20 20 N 1.31512 * 120.00353 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47271 * 60.00054 * 21 19 17 23 23 H 1.48503 * 109.47137 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47293 * 299.99639 * 21 19 17 25 25 C 1.38891 * 119.99141 * 0.25877 * 10 9 8 26 26 C 1.38070 * 119.99124 * 359.52975 * 25 10 9 27 27 H 1.08998 * 109.47331 * 59.99601 * 1 2 3 28 28 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47121 * 299.99498 * 1 2 3 30 30 H 1.08994 * 109.46793 * 240.00507 * 2 1 3 31 31 H 1.08998 * 109.47331 * 120.00399 * 2 1 3 32 32 H 1.09005 * 109.46720 * 269.99644 * 6 5 3 33 33 H 1.08997 * 109.47408 * 29.99890 * 6 5 3 34 34 H 1.09001 * 109.46852 * 149.99989 * 6 5 3 35 35 H 1.08003 * 120.00148 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.00664 * 179.97438 * 9 8 7 37 37 H 0.96992 * 120.00072 * 0.02562 * 11 10 9 38 38 H 1.09005 * 109.46997 * 299.99823 * 12 11 10 39 39 H 1.08996 * 109.47435 * 59.99645 * 12 11 10 40 40 H 1.08994 * 109.47563 * 60.00156 * 14 13 12 41 41 H 1.09007 * 109.47374 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.47060 * 299.99628 * 14 13 12 43 43 H 1.09001 * 109.46803 * 59.99776 * 15 13 12 44 44 H 1.08997 * 109.46875 * 180.02562 * 15 13 12 45 45 H 1.09003 * 109.46887 * 300.00197 * 15 13 12 46 46 H 1.09005 * 109.46984 * 299.99630 * 16 13 12 47 47 H 1.08991 * 109.47398 * 59.99854 * 16 13 12 48 48 H 0.96996 * 120.00612 * 180.02562 * 20 19 17 49 49 H 1.07993 * 120.00446 * 179.72606 * 25 10 9 50 50 H 1.07998 * 119.99396 * 180.18955 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3084 0.5589 -0.1179 7 6 3.8256 2.9834 0.1111 8 6 3.5985 3.8903 -0.9154 9 6 4.0601 5.1868 -0.8058 10 6 4.7511 5.5841 0.3315 11 7 5.2194 6.8977 0.4425 12 6 5.9488 7.3164 1.6421 13 6 6.3450 8.7883 1.5102 14 6 7.2386 8.9677 0.2813 15 6 5.0858 9.6435 1.3544 16 6 7.1062 9.2257 2.7632 17 6 7.4960 10.6757 2.6336 18 1 7.2279 11.2297 1.7460 19 6 8.1956 11.2948 3.6475 20 7 8.5233 10.6199 4.7277 21 14 8.6793 13.0919 3.4865 22 1 7.4573 13.9218 3.3353 23 1 9.4191 13.5162 4.7022 24 1 9.5468 13.2661 2.2939 25 6 4.9824 4.6754 1.3562 26 6 4.5168 3.3801 1.2481 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.5619 0.1909 0.8764 33 1 3.8586 -0.2459 -0.6993 34 1 5.2122 0.9071 -0.6179 35 1 3.0615 3.5813 -1.8000 36 1 3.8838 5.8921 -1.6045 37 1 5.0611 7.5312 -0.2747 38 1 5.3119 7.1890 2.5175 39 1 6.8455 6.7069 1.7533 40 1 6.6959 8.6562 -0.6112 41 1 7.5213 10.0163 0.1876 42 1 8.1356 8.3585 0.3923 43 1 4.4492 9.5156 2.2299 44 1 5.3682 10.6920 1.2600 45 1 4.5432 9.3319 0.4619 46 1 6.4691 9.0980 3.6384 47 1 8.0031 8.6166 2.8746 48 1 9.0152 11.0555 5.4412 49 1 5.5236 4.9829 2.2387 50 1 4.6940 2.6744 2.0462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883310752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:14 Heat of formation + Delta-G solvation = -23.035977 kcal Electronic energy + Delta-G solvation = -26252.359778 eV Core-core repulsion = 22664.848326 eV Total energy + Delta-G solvation = -3587.511451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55960 -39.04550 -37.47479 -35.77888 -33.88568 -32.92736 -32.13398 -30.87854 -28.85212 -27.11215 -26.79102 -26.50315 -25.96499 -24.52580 -23.09657 -22.28013 -21.35947 -19.39641 -18.26686 -17.49527 -17.08113 -16.79785 -16.38168 -16.21538 -15.27035 -14.59979 -14.48794 -14.37806 -14.27232 -13.95630 -13.59417 -13.24268 -13.18432 -13.02004 -13.00936 -12.87378 -12.76955 -12.60227 -12.13491 -12.09706 -12.06361 -11.91470 -11.46903 -11.22165 -11.04781 -11.01406 -10.87786 -10.64716 -10.38320 -10.27104 -10.07828 -9.95125 -9.70515 -9.21771 -8.96808 -8.94733 -8.84518 -8.37949 -7.10760 -6.02373 -4.03452 1.52743 1.60113 2.45342 2.80928 3.30816 3.36011 3.37595 3.74306 3.90144 4.36191 4.43701 4.67873 4.73141 4.82091 4.96352 5.05305 5.10923 5.17788 5.33207 5.36507 5.42811 5.46289 5.47023 5.59006 5.61617 5.61695 5.70690 5.76083 5.92563 6.00680 6.09230 6.17187 6.18908 6.25950 6.38000 6.45226 6.58429 6.63095 6.63931 6.65044 6.97571 7.04247 7.06513 7.10295 7.19102 7.57255 7.59869 7.72884 7.96131 7.97764 8.06531 8.38756 9.00888 9.59739 11.09035 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.033061 B = 0.002067 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.703766 B =13540.343508 C =13685.723726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C 0.508 3.492 4 O -0.526 6.526 5 N -0.568 5.568 6 C 0.080 3.920 7 C 0.057 3.943 8 C -0.052 4.052 9 C -0.196 4.196 10 C 0.231 3.769 11 N -0.736 5.736 12 C 0.131 3.869 13 C -0.071 4.071 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.191 4.191 26 C -0.067 4.067 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.399 0.601 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.029 0.971 46 H 0.017 0.983 47 H 0.017 0.983 48 H 0.260 0.740 49 H 0.127 0.873 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 -22.107 -11.142 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.181 4.181 3 C 0.297 3.703 4 O -0.401 6.401 5 N -0.298 5.298 6 C -0.063 4.063 7 C -0.035 4.035 8 C -0.072 4.072 9 C -0.219 4.219 10 C 0.124 3.876 11 N -0.363 5.363 12 C 0.007 3.993 13 C -0.071 4.071 14 C -0.183 4.183 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.215 4.215 26 C -0.087 4.087 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.235 0.765 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 49 H 0.145 0.855 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.780 -21.546 -10.779 26.001 hybrid contribution 0.445 1.158 -0.164 1.251 sum -9.335 -20.388 -10.943 24.951 Atomic orbital electron populations 1.21547 0.93011 1.01527 1.03485 1.21663 0.98587 0.93729 1.04132 1.20936 0.81551 0.91920 0.75888 1.90731 1.54575 1.46635 1.48190 1.45283 1.05819 1.05606 1.73136 1.21871 0.93492 0.89037 1.01886 1.17178 1.05708 0.84665 0.95912 1.20764 0.96729 0.92629 0.97057 1.20418 1.06137 0.96732 0.98635 1.17979 0.91103 0.85328 0.93181 1.45129 1.60713 1.08420 1.22079 1.21613 0.94805 0.96529 0.86312 1.20864 0.96058 0.91011 0.99214 1.21741 0.98561 1.02627 0.95391 1.21749 0.96351 1.01032 0.99245 1.19084 0.94522 0.96321 0.90141 1.21147 1.35033 0.95790 1.03009 0.92340 1.25010 0.96160 0.97870 0.95471 1.69943 1.39804 1.36415 1.07294 0.86701 0.78642 0.85549 0.77354 1.20315 1.21385 1.20335 1.20550 1.07720 0.93076 1.00137 1.20835 0.96853 0.95542 0.95469 0.91987 0.92086 0.91907 0.88996 0.88890 0.92378 0.90867 0.90631 0.86687 0.86175 0.76533 0.92561 0.92544 0.95161 0.91568 0.93463 0.93430 0.91560 0.95156 0.96431 0.96436 0.92986 0.85519 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.20 37.16 0.34 -0.67 16 2 C -0.14 -0.95 5.10 -27.88 -0.14 -1.10 16 3 C 0.51 5.74 7.55 -10.99 -0.08 5.66 16 4 O -0.53 -8.27 15.54 5.54 0.09 -8.19 16 5 N -0.57 -5.90 2.93 -120.77 -0.35 -6.25 16 6 C 0.08 0.48 10.10 59.85 0.60 1.09 16 7 C 0.06 0.73 4.83 -83.60 -0.40 0.33 16 8 C -0.05 -0.68 9.30 -39.42 -0.37 -1.05 16 9 C -0.20 -2.61 9.89 -39.41 -0.39 -3.00 16 10 C 0.23 3.30 6.66 -83.70 -0.56 2.74 16 11 N -0.74 -10.69 5.14 -58.58 -0.30 -10.99 16 12 C 0.13 2.17 3.80 -4.04 -0.02 2.15 16 13 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 14 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 15 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 16 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 17 C -0.51 -13.53 7.65 -34.44 -0.26 -13.80 16 18 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.19 -2.67 9.31 -39.40 -0.37 -3.04 16 26 C -0.07 -0.85 9.84 -39.42 -0.39 -1.24 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.09 0.41 7.24 -51.93 -0.38 0.04 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.27 6.48 -51.93 -0.34 -0.07 16 34 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 35 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.40 5.45 6.18 -40.82 -0.25 5.19 16 38 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 39 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 40 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 41 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 45 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.13 1.74 6.73 -52.49 -0.35 1.39 16 50 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -31.68 396.01 -9.07 -40.76 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.46 Total: 3.00 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.72 Total: -15.03 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.08 Total: -42.68 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.68 -9.07 -40.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883310752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.720 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds