Wall clock time and date at job start Tue Mar 31 2020 13:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47071 * 2 1 4 4 O 1.21297 * 119.99863 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00107 * 180.02562 * 3 2 1 6 6 C 1.46500 * 119.99694 * 5.28120 * 5 3 2 7 7 C 1.40151 * 120.00234 * 185.27897 * 5 3 2 8 8 C 1.38846 * 119.99541 * 292.83822 * 7 5 3 9 9 C 1.38059 * 120.00671 * 180.02562 * 8 7 5 10 10 C 1.38888 * 119.99492 * 359.97438 * 9 8 7 11 11 N 1.39895 * 120.00596 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99899 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47108 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47027 * 300.00138 * 13 12 11 15 15 C 1.53008 * 109.47209 * 59.99942 * 13 12 11 16 16 C 1.52995 * 109.47238 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.47344 * 180.02562 * 16 13 12 18 18 H 1.08001 * 119.99821 * 359.97438 * 17 16 13 19 19 C 1.37873 * 120.00079 * 180.02562 * 17 16 13 20 20 N 1.31512 * 120.00353 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47271 * 60.00054 * 21 19 17 23 23 H 1.48503 * 109.47137 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47293 * 299.99639 * 21 19 17 25 25 C 1.38891 * 119.99141 * 0.25877 * 10 9 8 26 26 C 1.38070 * 119.99124 * 359.52975 * 25 10 9 27 27 H 1.08998 * 109.47331 * 59.99601 * 1 2 3 28 28 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47121 * 299.99498 * 1 2 3 30 30 H 1.08994 * 109.46793 * 240.00507 * 2 1 3 31 31 H 1.08998 * 109.47331 * 120.00399 * 2 1 3 32 32 H 1.09005 * 109.46720 * 269.99644 * 6 5 3 33 33 H 1.08997 * 109.47408 * 29.99890 * 6 5 3 34 34 H 1.09001 * 109.46852 * 149.99989 * 6 5 3 35 35 H 1.08003 * 120.00148 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.00664 * 179.97438 * 9 8 7 37 37 H 0.96992 * 120.00072 * 0.02562 * 11 10 9 38 38 H 1.09005 * 109.46997 * 299.99823 * 12 11 10 39 39 H 1.08996 * 109.47435 * 59.99645 * 12 11 10 40 40 H 1.08994 * 109.47563 * 60.00156 * 14 13 12 41 41 H 1.09007 * 109.47374 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.47060 * 299.99628 * 14 13 12 43 43 H 1.09001 * 109.46803 * 59.99776 * 15 13 12 44 44 H 1.08997 * 109.46875 * 180.02562 * 15 13 12 45 45 H 1.09003 * 109.46887 * 300.00197 * 15 13 12 46 46 H 1.09005 * 109.46984 * 299.99630 * 16 13 12 47 47 H 1.08991 * 109.47398 * 59.99854 * 16 13 12 48 48 H 0.96996 * 120.00612 * 180.02562 * 20 19 17 49 49 H 1.07993 * 120.00446 * 179.72606 * 25 10 9 50 50 H 1.07998 * 119.99396 * 180.18955 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3084 0.5589 -0.1179 7 6 3.8256 2.9834 0.1111 8 6 3.5985 3.8903 -0.9154 9 6 4.0601 5.1868 -0.8058 10 6 4.7511 5.5841 0.3315 11 7 5.2194 6.8977 0.4425 12 6 5.9488 7.3164 1.6421 13 6 6.3450 8.7883 1.5102 14 6 7.2386 8.9677 0.2813 15 6 5.0858 9.6435 1.3544 16 6 7.1062 9.2257 2.7632 17 6 7.4960 10.6757 2.6336 18 1 7.2279 11.2297 1.7460 19 6 8.1956 11.2948 3.6475 20 7 8.5233 10.6199 4.7277 21 14 8.6793 13.0919 3.4865 22 1 7.4573 13.9218 3.3353 23 1 9.4191 13.5162 4.7022 24 1 9.5468 13.2661 2.2939 25 6 4.9824 4.6754 1.3562 26 6 4.5168 3.3801 1.2481 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.5619 0.1909 0.8764 33 1 3.8586 -0.2459 -0.6993 34 1 5.2122 0.9071 -0.6179 35 1 3.0615 3.5813 -1.8000 36 1 3.8838 5.8921 -1.6045 37 1 5.0611 7.5312 -0.2747 38 1 5.3119 7.1890 2.5175 39 1 6.8455 6.7069 1.7533 40 1 6.6959 8.6562 -0.6112 41 1 7.5213 10.0163 0.1876 42 1 8.1356 8.3585 0.3923 43 1 4.4492 9.5156 2.2299 44 1 5.3682 10.6920 1.2600 45 1 4.5432 9.3319 0.4619 46 1 6.4691 9.0980 3.6384 47 1 8.0031 8.6166 2.8746 48 1 9.0152 11.0555 5.4412 49 1 5.5236 4.9829 2.2387 50 1 4.6940 2.6744 2.0462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883310752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:13 Heat of formation + Delta-G solvation = -40.079243 kcal Electronic energy + Delta-G solvation = -26253.098829 eV Core-core repulsion = 22664.848326 eV Total energy + Delta-G solvation = -3588.250503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44851 -40.15010 -38.82593 -36.79380 -35.20082 -34.14273 -33.43171 -31.91386 -30.00800 -28.81425 -27.98129 -27.59082 -27.19937 -25.45278 -24.69628 -23.42083 -22.40255 -20.22672 -19.74127 -18.48255 -18.36863 -18.05386 -17.66951 -17.09815 -16.53119 -16.28254 -15.78950 -15.47955 -15.23881 -15.00093 -14.63309 -14.48502 -14.40114 -14.26062 -14.16957 -13.93443 -13.74163 -13.58625 -13.49056 -13.09057 -13.01196 -12.84535 -12.74007 -12.61805 -12.53502 -12.33991 -12.26449 -12.06830 -11.99382 -11.92513 -11.58040 -10.99622 -10.98344 -10.85684 -10.80002 -10.50948 -9.88822 -9.81112 -8.20879 -8.14848 -6.21911 0.49028 0.55712 1.41374 1.42891 1.50151 1.64032 2.06593 2.41561 2.56937 2.88203 3.19351 3.70909 3.93387 4.00594 4.05253 4.10205 4.19803 4.23456 4.24519 4.32981 4.45002 4.57560 4.61100 4.69156 4.71717 4.74882 4.75693 4.78811 4.95934 4.96273 5.00003 5.02385 5.07968 5.10320 5.10839 5.15515 5.36170 5.39921 5.43211 5.48165 5.50828 5.54880 5.58852 5.65384 5.80115 5.89211 6.01683 6.29362 6.39617 6.45084 6.87496 6.92853 7.24206 7.45326 8.97066 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.033061 B = 0.002067 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.703766 B =13540.343508 C =13685.723726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.499 3.501 4 O -0.582 6.582 5 N -0.569 5.569 6 C 0.072 3.928 7 C 0.056 3.944 8 C -0.064 4.064 9 C -0.194 4.194 10 C 0.214 3.786 11 N -0.733 5.733 12 C 0.147 3.853 13 C -0.065 4.065 14 C -0.119 4.119 15 C -0.121 4.121 16 C 0.042 3.958 17 C -0.516 4.516 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.956 3.044 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.268 1.268 25 C -0.203 4.203 26 C -0.071 4.071 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.404 0.596 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.051 0.949 45 H 0.062 0.938 46 H -0.012 1.012 47 H -0.009 1.009 48 H 0.260 0.740 49 H 0.122 0.878 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.951 -23.706 -12.984 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.290 3.710 4 O -0.461 6.461 5 N -0.298 5.298 6 C -0.068 4.068 7 C -0.037 4.037 8 C -0.084 4.084 9 C -0.217 4.217 10 C 0.109 3.891 11 N -0.362 5.362 12 C 0.023 3.977 13 C -0.065 4.065 14 C -0.177 4.177 15 C -0.178 4.178 16 C 0.005 3.995 17 C -0.554 4.554 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.781 3.219 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.193 1.193 25 C -0.226 4.226 26 C -0.091 4.091 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.242 0.758 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.006 0.994 47 H 0.009 0.991 48 H 0.069 0.931 49 H 0.140 0.860 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.163 -23.187 -12.650 28.301 hybrid contribution 0.535 1.523 0.400 1.663 sum -9.628 -21.664 -12.251 26.685 Atomic orbital electron populations 1.21558 0.93740 1.02690 1.01641 1.21736 0.97842 0.90821 1.06733 1.21839 0.81276 0.93330 0.74558 1.90705 1.55972 1.48594 1.50869 1.45522 1.06446 1.05573 1.72295 1.22169 0.92857 0.88349 1.03475 1.17410 1.04619 0.86099 0.95536 1.20939 0.96973 0.92883 0.97589 1.20590 1.05382 0.97113 0.98618 1.18076 0.92020 0.85142 0.93826 1.44845 1.61113 1.08821 1.21430 1.21226 0.94672 0.94822 0.87005 1.20678 0.96128 0.92590 0.97131 1.21658 0.98436 1.01577 0.95999 1.21675 0.95886 0.99932 1.00316 1.18949 0.93482 0.95295 0.91805 1.21559 1.34049 0.96849 1.02965 0.91452 1.25904 0.96510 1.02369 0.95294 1.70088 1.41037 1.38283 1.08216 0.85636 0.78533 0.80282 0.77405 1.19437 1.21497 1.19296 1.20670 1.08044 0.93797 1.00111 1.21005 0.96687 0.95425 0.96006 0.93646 0.89287 0.94048 0.85859 0.86377 0.90826 0.87816 0.90672 0.86279 0.84619 0.75848 0.93624 0.93050 0.91848 0.93061 0.94129 0.94458 0.92985 0.91943 0.99379 0.99107 0.93139 0.85982 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 71.98 0.66 -1.14 16 2 C -0.13 -1.38 5.10 29.85 0.15 -1.23 16 3 C 0.50 10.53 7.55 87.66 0.66 11.19 16 4 O -0.58 -18.37 15.54 -3.08 -0.05 -18.42 16 5 N -0.57 -10.71 2.93 -654.38 -1.92 -12.63 16 6 C 0.07 0.65 10.10 127.77 1.29 1.94 16 7 C 0.06 1.37 4.83 38.10 0.18 1.55 16 8 C -0.06 -1.63 9.30 22.37 0.21 -1.42 16 9 C -0.19 -4.96 9.89 22.38 0.22 -4.74 16 10 C 0.21 5.99 6.66 38.17 0.25 6.24 16 11 N -0.73 -20.55 5.14 -339.26 -1.74 -22.30 16 12 C 0.15 4.90 3.80 86.38 0.33 5.23 16 13 C -0.06 -2.45 0.54 -52.18 -0.03 -2.47 16 14 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 15 C -0.12 -4.27 8.05 71.98 0.58 -3.69 16 16 C 0.04 2.11 4.04 29.85 0.12 2.23 16 17 C -0.52 -27.73 7.65 25.60 0.20 -27.54 16 18 H 0.07 3.44 5.68 -2.91 -0.02 3.42 16 19 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 20 N -0.94 -56.25 13.29 21.45 0.28 -55.96 16 21 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C -0.20 -5.63 9.31 22.39 0.21 -5.42 16 26 C -0.07 -1.76 9.84 22.38 0.22 -1.54 16 27 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.04 0.70 8.10 -2.39 -0.02 0.69 16 30 H 0.12 0.55 7.24 -2.39 -0.02 0.54 16 31 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.10 0.30 6.48 -2.39 -0.02 0.29 16 34 H 0.07 0.71 8.05 -2.39 -0.02 0.69 16 35 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.40 10.21 6.18 -92.71 -0.57 9.64 16 38 H 0.05 1.61 7.96 -2.38 -0.02 1.59 16 39 H 0.05 1.75 7.94 -2.39 -0.02 1.73 16 40 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 41 H 0.05 1.91 6.62 -2.38 -0.02 1.90 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 45 H 0.06 1.79 6.86 -2.39 -0.02 1.78 16 46 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 47 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 48 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 49 H 0.12 3.43 6.73 -2.91 -0.02 3.41 16 50 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -71.55 396.01 5.24 -66.31 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.34 Total: 21.31 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 6.30 Total: -24.09 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -3.38 Total: -90.89 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.05 Total: -18.42 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -71.55 5.24 -66.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883310752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.231 kcal (2) G-P(sol) polarization free energy of solvation -71.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds