Wall clock time and date at job start Tue Mar 31 2020 13:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.45867 * 2 1 4 4 C 1.53051 * 109.44633 * 240.03749 * 2 1 3 5 5 C 1.53186 * 109.30954 * 178.61984 * 4 2 1 6 6 N 1.46930 * 108.77695 * 54.63714 * 5 4 2 7 7 C 1.36937 * 120.63183 * 126.40908 * 6 5 4 8 8 H 1.07992 * 120.00326 * 207.66932 * 7 6 5 9 9 C 1.38816 * 119.99970 * 27.67273 * 7 6 5 10 10 N 1.31622 * 119.99648 * 17.36443 * 9 7 6 11 11 Si 1.86798 * 120.00189 * 197.36564 * 9 7 6 12 12 H 1.48500 * 109.46773 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47176 * 119.99729 * 11 9 7 14 14 H 1.48491 * 109.47342 * 240.00083 * 11 9 7 15 15 C 1.46924 * 118.73657 * 306.38979 * 6 5 4 16 16 C 1.53037 * 109.45967 * 119.98023 * 2 1 3 17 17 H 1.09000 * 109.50110 * 61.38418 * 16 2 1 18 18 N 1.46502 * 109.49686 * 301.32055 * 16 2 1 19 19 C 1.34775 * 119.99901 * 154.72632 * 18 16 2 20 20 O 1.21279 * 120.00337 * 0.27831 * 19 18 16 21 21 C 1.50696 * 119.99740 * 180.27557 * 19 18 16 22 22 H 1.09002 * 115.51246 * 34.64115 * 21 19 18 23 23 C 1.53000 * 117.42817 * 179.97438 * 21 19 18 24 24 H 1.08995 * 119.98776 * 355.25901 * 23 21 19 25 25 C 1.53005 * 117.42859 * 249.38319 * 21 19 18 26 26 H 1.08994 * 119.98909 * 4.74260 * 25 21 19 27 27 C 1.58258 * 115.77697 * 161.24832 * 25 21 19 28 28 H 1.08995 * 116.44924 * 262.43731 * 27 25 21 29 29 C 1.55927 * 104.21999 * 133.40309 * 27 25 21 30 30 C 1.54583 * 104.64401 * 289.38706 * 29 27 25 31 31 C 1.55922 * 104.64390 * 0.02562 * 30 29 27 32 32 H 1.09005 * 115.92197 * 199.16381 * 31 30 29 33 33 C 1.56950 * 101.03051 * 29.29886 * 27 25 21 34 34 H 1.08995 * 109.46663 * 300.02338 * 1 2 3 35 35 H 1.08996 * 109.47038 * 60.02566 * 1 2 3 36 36 H 1.09003 * 109.47102 * 180.02562 * 1 2 3 37 37 H 1.08994 * 109.49454 * 298.57369 * 4 2 1 38 38 H 1.08996 * 109.49433 * 58.63739 * 4 2 1 39 39 H 1.09007 * 109.58455 * 174.42312 * 5 4 2 40 40 H 1.08995 * 109.58956 * 294.84668 * 5 4 2 41 41 H 0.97001 * 119.99731 * 180.02562 * 10 9 7 42 42 H 1.08996 * 109.58488 * 293.81628 * 15 6 5 43 43 H 1.09002 * 109.58541 * 173.39376 * 15 6 5 44 44 H 0.97002 * 119.99507 * 335.00325 * 18 16 2 45 45 H 1.09004 * 110.40037 * 170.60209 * 29 27 25 46 46 H 1.08995 * 110.40395 * 48.17813 * 29 27 25 47 47 H 1.09000 * 110.40421 * 241.21319 * 30 29 27 48 48 H 1.08991 * 110.40260 * 118.79550 * 30 29 27 49 49 H 1.08994 * 112.02830 * 296.63323 * 33 27 25 50 50 H 1.09000 * 112.02705 * 170.11001 * 33 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2503 5 6 3.5711 -0.6889 -1.2647 6 7 4.0677 -1.2494 -0.0005 7 6 4.9760 -2.2741 -0.0007 8 1 5.0092 -2.9665 0.8274 9 6 5.8542 -2.4229 -1.0655 10 7 6.0600 -1.4209 -1.8937 11 14 6.7437 -4.0452 -1.3228 12 1 6.3411 -5.0040 -0.2626 13 1 6.3863 -4.6002 -2.6531 14 1 8.2102 -3.8215 -1.2575 15 6 3.5714 -0.6891 1.2638 16 6 2.0399 -0.7210 1.2499 17 1 1.6971 -1.7557 1.2383 18 7 1.5259 -0.0490 2.4459 19 6 1.3922 -0.7341 3.5988 20 8 1.7022 -1.9056 3.6475 21 6 0.8577 -0.0444 4.8274 22 1 0.0977 0.7156 4.6460 23 6 0.7297 -0.8779 6.1041 24 1 0.9466 -1.9458 6.0815 25 6 1.8337 0.1978 5.9806 26 1 2.8876 -0.0545 5.8644 27 6 1.3981 1.2981 7.0313 28 1 1.8225 2.2930 6.8967 29 6 1.6555 0.6288 8.4159 30 6 0.5685 -0.4643 8.5297 31 6 -0.2429 -0.3530 7.2030 32 1 -1.2365 -0.8013 7.2130 33 6 -0.1656 1.1936 6.9448 34 1 -0.3632 0.5142 0.8898 35 1 -0.3633 0.5134 -0.8902 36 1 -0.3633 -1.0277 0.0005 37 1 1.6973 -1.7555 -1.2386 38 1 1.6564 -0.2209 -2.1399 39 1 3.9412 -1.2848 -2.0990 40 1 3.9142 0.3405 -1.3677 41 1 6.6734 -1.5250 -2.6379 42 1 3.9146 0.3402 1.3670 43 1 3.9417 -1.2853 2.0979 44 1 1.2780 0.8880 2.4069 45 1 1.5452 1.3592 9.2174 46 1 2.6489 0.1811 8.4427 47 1 -0.0762 -0.2713 9.3872 48 1 1.0275 -1.4494 8.6125 49 1 -0.5392 1.4622 5.9568 50 1 -0.6576 1.7648 7.7321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968692621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:16 Heat of formation + Delta-G solvation = 14.679264 kcal Electronic energy + Delta-G solvation = -27639.076266 eV Core-core repulsion = 24053.200270 eV Total energy + Delta-G solvation = -3585.875996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42023 -39.35797 -37.52839 -34.43623 -33.63426 -32.91285 -31.07359 -29.13770 -29.03569 -28.27503 -27.33168 -24.75435 -23.89741 -22.11483 -21.81639 -21.03914 -20.36883 -19.63171 -18.93596 -18.76472 -17.37336 -16.76930 -16.15542 -15.77320 -15.47357 -14.79499 -14.50911 -14.30599 -13.71683 -13.48202 -13.41889 -13.21779 -13.12842 -12.79379 -12.50301 -12.45042 -12.00642 -11.75603 -11.67765 -11.61537 -11.50276 -11.48616 -11.37054 -11.12318 -11.01686 -10.79276 -10.63057 -10.54506 -10.24163 -10.12429 -9.99448 -9.87283 -9.80222 -9.76868 -9.59996 -9.36342 -8.74455 -8.36611 -6.64703 -5.75976 -3.17707 2.68549 3.28896 3.40683 3.48522 3.52950 3.76287 4.17248 4.24247 4.26607 4.54972 4.80168 4.86281 4.87056 4.94896 5.06221 5.08558 5.15329 5.16709 5.24652 5.31301 5.34084 5.40851 5.50464 5.53152 5.63029 5.70876 5.72535 5.80860 5.87163 5.89956 5.93069 5.99246 6.02932 6.09551 6.10723 6.17941 6.20489 6.25620 6.31458 6.59415 6.65544 6.73345 6.76476 6.86627 7.05169 7.38055 7.66933 7.83300 7.86058 8.46907 8.55702 9.24897 9.87288 10.42944 11.32725 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.003106 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.104496 B = 9011.392040 C = 9990.616149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.588 5.588 7 C -0.248 4.248 8 H 0.067 0.933 9 C 0.001 3.999 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.143 3.857 16 C 0.133 3.867 17 H 0.085 0.915 18 N -0.716 5.716 19 C 0.539 3.461 20 O -0.537 6.537 21 C -0.167 4.167 22 H 0.122 0.878 23 C -0.130 4.130 24 H 0.122 0.878 25 C -0.135 4.135 26 H 0.121 0.879 27 C -0.071 4.071 28 H 0.101 0.899 29 C -0.119 4.119 30 C -0.118 4.118 31 C -0.074 4.074 32 H 0.100 0.900 33 C -0.137 4.137 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.018 0.982 41 H 0.253 0.747 42 H 0.017 0.983 43 H 0.056 0.944 44 H 0.394 0.606 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.833 8.580 16.010 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.042 3.958 6 N -0.311 5.311 7 C -0.378 4.378 8 H 0.084 0.916 9 C -0.197 4.197 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.015 3.985 16 C 0.028 3.972 17 H 0.103 0.897 18 N -0.366 5.366 19 C 0.325 3.675 20 O -0.414 6.414 21 C -0.188 4.188 22 H 0.139 0.861 23 C -0.148 4.148 24 H 0.140 0.860 25 C -0.153 4.153 26 H 0.138 0.862 27 C -0.090 4.090 28 H 0.119 0.881 29 C -0.156 4.156 30 C -0.155 4.155 31 C -0.092 4.092 32 H 0.118 0.882 33 C -0.174 4.174 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.228 0.772 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.455 7.693 15.909 22.830 hybrid contribution 0.432 -0.312 -0.372 0.649 sum -14.024 7.381 15.537 22.193 Atomic orbital electron populations 1.21849 0.96047 1.01528 1.00672 1.21306 0.94528 0.99640 0.95526 0.91519 1.22248 1.00668 0.99545 0.94867 1.20845 0.87325 0.97287 0.90385 1.44009 1.48093 1.39804 0.99154 1.19268 1.09613 1.02776 1.06154 0.91564 1.25016 0.97247 0.97531 0.99886 1.70053 1.37874 1.28967 1.17986 0.86223 0.79073 0.83759 0.77795 1.20167 1.21543 1.21744 1.21179 0.90183 0.96540 0.90593 1.21749 0.96636 0.96893 0.81951 0.89698 1.46031 1.65997 1.14022 1.10535 1.19521 0.77795 0.86608 0.83572 1.90721 1.49899 1.16289 1.84509 1.22385 1.03677 1.03599 0.89130 0.86079 1.23548 0.99570 0.97612 0.94107 0.85991 1.24105 0.95986 0.99049 0.96202 0.86154 1.23577 0.95103 0.96795 0.93479 0.88091 1.22535 0.99237 0.97658 0.96175 1.22529 0.97133 0.99296 0.96560 1.23164 0.97347 0.95077 0.93585 0.88156 1.23740 0.95900 0.96047 1.01738 0.93415 0.93003 0.92973 0.92450 0.92742 0.89242 0.96356 0.93748 0.96561 0.92505 0.77230 0.91676 0.91424 0.91709 0.91449 0.90599 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.02 37.16 0.34 -1.56 16 2 C -0.09 -1.47 2.27 -90.57 -0.21 -1.68 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.13 -2.52 5.36 -26.61 -0.14 -2.66 16 5 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 6 N -0.59 -15.17 2.99 -172.32 -0.52 -15.69 16 7 C -0.25 -7.10 9.59 -15.06 -0.14 -7.24 16 8 H 0.07 1.92 7.89 -52.49 -0.41 1.50 16 9 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 10 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 11 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 C 0.14 3.18 6.10 -3.71 -0.02 3.16 16 16 C 0.13 2.43 2.07 -67.81 -0.14 2.29 16 17 H 0.08 1.80 7.57 -51.93 -0.39 1.41 16 18 N -0.72 -10.50 4.37 -53.69 -0.23 -10.73 16 19 C 0.54 8.47 7.58 -10.99 -0.08 8.38 16 20 O -0.54 -10.93 16.01 5.56 0.09 -10.84 16 21 C -0.17 -1.93 5.38 -91.77 -0.49 -2.42 16 22 H 0.12 1.13 5.96 -51.93 -0.31 0.82 16 23 C -0.13 -1.45 5.88 -88.23 -0.52 -1.96 16 24 H 0.12 1.61 7.82 -51.93 -0.41 1.20 16 25 C -0.13 -1.45 6.40 -86.86 -0.56 -2.01 16 26 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 27 C -0.07 -0.58 5.21 -84.02 -0.44 -1.02 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 C -0.12 -0.90 6.20 -24.33 -0.15 -1.06 16 30 C -0.12 -0.90 6.21 -24.34 -0.15 -1.05 16 31 C -0.07 -0.61 5.17 -85.37 -0.44 -1.05 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 C -0.14 -1.01 6.23 -22.43 -0.14 -1.15 16 34 H 0.05 0.55 7.36 -51.93 -0.38 0.17 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.37 7.93 -51.93 -0.41 0.95 16 44 H 0.39 4.56 8.31 -40.82 -0.34 4.22 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.55 8.04 -51.93 -0.42 0.14 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 49 H 0.08 0.55 5.90 -51.93 -0.31 0.25 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -31.97 379.37 -11.49 -43.47 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -8.74 Total: 3.82 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -3.40 Total: -7.12 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.13 Total: -52.34 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.97 -11.49 -43.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968692621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.146 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds