Wall clock time and date at job start Tue Mar 31 2020 13:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.45867 * 2 1 4 4 C 1.53051 * 109.44633 * 240.03749 * 2 1 3 5 5 C 1.53186 * 109.30954 * 178.61984 * 4 2 1 6 6 N 1.46930 * 108.77695 * 54.63714 * 5 4 2 7 7 C 1.36937 * 120.63183 * 126.40908 * 6 5 4 8 8 H 1.07992 * 120.00326 * 207.66932 * 7 6 5 9 9 C 1.38816 * 119.99970 * 27.67273 * 7 6 5 10 10 N 1.31622 * 119.99648 * 17.36443 * 9 7 6 11 11 Si 1.86798 * 120.00189 * 197.36564 * 9 7 6 12 12 H 1.48500 * 109.46773 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47176 * 119.99729 * 11 9 7 14 14 H 1.48491 * 109.47342 * 240.00083 * 11 9 7 15 15 C 1.46924 * 118.73657 * 306.38979 * 6 5 4 16 16 C 1.53037 * 109.45967 * 119.98023 * 2 1 3 17 17 H 1.09000 * 109.50110 * 61.38418 * 16 2 1 18 18 N 1.46502 * 109.49686 * 301.32055 * 16 2 1 19 19 C 1.34775 * 119.99901 * 154.72632 * 18 16 2 20 20 O 1.21279 * 120.00337 * 0.27831 * 19 18 16 21 21 C 1.50696 * 119.99740 * 180.27557 * 19 18 16 22 22 H 1.09002 * 115.51246 * 34.64115 * 21 19 18 23 23 C 1.53000 * 117.42817 * 179.97438 * 21 19 18 24 24 H 1.08995 * 119.98776 * 355.25901 * 23 21 19 25 25 C 1.53005 * 117.42859 * 249.38319 * 21 19 18 26 26 H 1.08994 * 119.98909 * 4.74260 * 25 21 19 27 27 C 1.58258 * 115.77697 * 161.24832 * 25 21 19 28 28 H 1.08995 * 116.44924 * 262.43731 * 27 25 21 29 29 C 1.55927 * 104.21999 * 133.40309 * 27 25 21 30 30 C 1.54583 * 104.64401 * 289.38706 * 29 27 25 31 31 C 1.55922 * 104.64390 * 0.02562 * 30 29 27 32 32 H 1.09005 * 115.92197 * 199.16381 * 31 30 29 33 33 C 1.56950 * 101.03051 * 29.29886 * 27 25 21 34 34 H 1.08995 * 109.46663 * 300.02338 * 1 2 3 35 35 H 1.08996 * 109.47038 * 60.02566 * 1 2 3 36 36 H 1.09003 * 109.47102 * 180.02562 * 1 2 3 37 37 H 1.08994 * 109.49454 * 298.57369 * 4 2 1 38 38 H 1.08996 * 109.49433 * 58.63739 * 4 2 1 39 39 H 1.09007 * 109.58455 * 174.42312 * 5 4 2 40 40 H 1.08995 * 109.58956 * 294.84668 * 5 4 2 41 41 H 0.97001 * 119.99731 * 180.02562 * 10 9 7 42 42 H 1.08996 * 109.58488 * 293.81628 * 15 6 5 43 43 H 1.09002 * 109.58541 * 173.39376 * 15 6 5 44 44 H 0.97002 * 119.99507 * 335.00325 * 18 16 2 45 45 H 1.09004 * 110.40037 * 170.60209 * 29 27 25 46 46 H 1.08995 * 110.40395 * 48.17813 * 29 27 25 47 47 H 1.09000 * 110.40421 * 241.21319 * 30 29 27 48 48 H 1.08991 * 110.40260 * 118.79550 * 30 29 27 49 49 H 1.08994 * 112.02830 * 296.63323 * 33 27 25 50 50 H 1.09000 * 112.02705 * 170.11001 * 33 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2503 5 6 3.5711 -0.6889 -1.2647 6 7 4.0677 -1.2494 -0.0005 7 6 4.9760 -2.2741 -0.0007 8 1 5.0092 -2.9665 0.8274 9 6 5.8542 -2.4229 -1.0655 10 7 6.0600 -1.4209 -1.8937 11 14 6.7437 -4.0452 -1.3228 12 1 6.3411 -5.0040 -0.2626 13 1 6.3863 -4.6002 -2.6531 14 1 8.2102 -3.8215 -1.2575 15 6 3.5714 -0.6891 1.2638 16 6 2.0399 -0.7210 1.2499 17 1 1.6971 -1.7557 1.2383 18 7 1.5259 -0.0490 2.4459 19 6 1.3922 -0.7341 3.5988 20 8 1.7022 -1.9056 3.6475 21 6 0.8577 -0.0444 4.8274 22 1 0.0977 0.7156 4.6460 23 6 0.7297 -0.8779 6.1041 24 1 0.9466 -1.9458 6.0815 25 6 1.8337 0.1978 5.9806 26 1 2.8876 -0.0545 5.8644 27 6 1.3981 1.2981 7.0313 28 1 1.8225 2.2930 6.8967 29 6 1.6555 0.6288 8.4159 30 6 0.5685 -0.4643 8.5297 31 6 -0.2429 -0.3530 7.2030 32 1 -1.2365 -0.8013 7.2130 33 6 -0.1656 1.1936 6.9448 34 1 -0.3632 0.5142 0.8898 35 1 -0.3633 0.5134 -0.8902 36 1 -0.3633 -1.0277 0.0005 37 1 1.6973 -1.7555 -1.2386 38 1 1.6564 -0.2209 -2.1399 39 1 3.9412 -1.2848 -2.0990 40 1 3.9142 0.3405 -1.3677 41 1 6.6734 -1.5250 -2.6379 42 1 3.9146 0.3402 1.3670 43 1 3.9417 -1.2853 2.0979 44 1 1.2780 0.8880 2.4069 45 1 1.5452 1.3592 9.2174 46 1 2.6489 0.1811 8.4427 47 1 -0.0762 -0.2713 9.3872 48 1 1.0275 -1.4494 8.6125 49 1 -0.5392 1.4622 5.9568 50 1 -0.6576 1.7648 7.7321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968692621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:16 Heat of formation + Delta-G solvation = -3.524322 kcal Electronic energy + Delta-G solvation = -27639.865633 eV Core-core repulsion = 24053.200270 eV Total energy + Delta-G solvation = -3586.665363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26149 -40.70876 -39.07620 -36.21255 -34.59340 -34.34431 -33.06610 -30.67691 -29.76809 -29.07316 -28.82989 -26.23097 -25.46658 -23.57769 -22.71824 -22.55709 -21.59067 -21.08048 -19.92155 -19.52924 -18.79279 -18.44465 -17.22804 -16.88405 -16.68635 -16.41712 -15.97334 -15.68083 -15.38803 -15.22766 -14.93344 -14.54487 -14.20950 -13.93356 -13.80891 -13.60635 -13.24158 -13.19720 -13.16256 -12.78417 -12.68477 -12.44282 -12.39702 -12.32136 -12.15648 -12.05762 -11.99397 -11.97382 -11.80818 -11.68289 -11.45460 -11.28854 -11.21680 -10.87150 -10.69971 -10.63546 -10.56302 -10.10658 -8.73552 -7.94483 -5.40012 1.40370 1.41880 1.47074 1.53942 2.07386 2.47184 2.80526 3.19178 3.33590 3.55742 3.59852 3.69261 3.72991 3.96431 3.97677 3.99071 4.05966 4.11233 4.14677 4.29942 4.41654 4.45790 4.47171 4.51891 4.59670 4.63832 4.70999 4.73623 4.87985 4.91123 4.93061 5.00910 5.05038 5.07887 5.08494 5.17544 5.20928 5.22195 5.25053 5.26030 5.27526 5.40652 5.42928 5.44530 5.52341 5.55748 5.59123 5.73997 6.32748 6.60929 7.08854 7.30667 7.78112 8.28185 9.11251 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.003106 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.104496 B = 9011.392040 C = 9990.616149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.172 3.828 6 N -0.607 5.607 7 C -0.270 4.270 8 H 0.050 0.950 9 C -0.042 4.042 10 N -0.927 5.927 11 Si 0.965 3.035 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.286 1.286 15 C 0.146 3.854 16 C 0.150 3.850 17 H 0.051 0.949 18 N -0.700 5.700 19 C 0.534 3.466 20 O -0.592 6.592 21 C -0.161 4.161 22 H 0.157 0.843 23 C -0.140 4.140 24 H 0.089 0.911 25 C -0.137 4.137 26 H 0.095 0.905 27 C -0.063 4.063 28 H 0.117 0.883 29 C -0.120 4.120 30 C -0.119 4.119 31 C -0.068 4.068 32 H 0.112 0.888 33 C -0.128 4.128 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.006 0.994 41 H 0.253 0.747 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.415 0.585 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.084 0.916 48 H 0.051 0.949 49 H 0.083 0.917 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.401 10.966 17.021 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.331 5.331 7 C -0.400 4.400 8 H 0.067 0.933 9 C -0.238 4.238 10 N -0.573 5.573 11 Si 0.793 3.207 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.212 1.212 15 C 0.019 3.981 16 C 0.044 3.956 17 H 0.070 0.930 18 N -0.351 5.351 19 C 0.322 3.678 20 O -0.473 6.473 21 C -0.181 4.181 22 H 0.174 0.826 23 C -0.159 4.159 24 H 0.107 0.893 25 C -0.156 4.156 26 H 0.113 0.887 27 C -0.081 4.081 28 H 0.135 0.865 29 C -0.157 4.157 30 C -0.156 4.156 31 C -0.086 4.086 32 H 0.130 0.870 33 C -0.165 4.165 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.024 0.976 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.043 0.957 44 H 0.253 0.747 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.103 0.897 48 H 0.070 0.930 49 H 0.101 0.899 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.057 10.132 16.932 26.082 hybrid contribution 1.325 -1.093 -0.642 1.834 sum -15.732 9.039 16.290 24.383 Atomic orbital electron populations 1.21769 0.92780 1.01624 1.02987 1.21236 0.97063 0.99330 0.92502 0.90007 1.22088 0.96655 0.99777 0.97764 1.20723 0.90712 0.95432 0.88426 1.44229 1.48263 1.39752 1.00860 1.19399 1.10707 1.03697 1.06198 0.93265 1.25715 0.98036 1.00561 0.99529 1.70173 1.38391 1.30482 1.18248 0.85248 0.77867 0.79881 0.77701 1.20093 1.20775 1.21246 1.21198 0.93101 0.95564 0.88256 1.21227 0.93534 0.96175 0.84689 0.93034 1.45795 1.65169 1.14871 1.09266 1.20336 0.76663 0.86080 0.84741 1.90703 1.52208 1.18997 1.85389 1.22343 1.04591 1.04079 0.87092 0.82582 1.23594 1.01172 0.96176 0.94917 0.89277 1.24187 0.94637 1.00469 0.96336 0.88710 1.23655 0.96005 0.96324 0.92096 0.86500 1.22568 0.98498 0.98016 0.96660 1.22556 0.97379 0.98644 0.97037 1.23234 0.97033 0.96065 0.92287 0.87044 1.23749 0.94925 0.94878 1.02943 0.91089 0.90729 0.94016 0.93724 0.89696 0.92630 0.97613 0.93753 0.96156 0.95714 0.74723 0.89651 0.92844 0.89735 0.92993 0.89866 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.02 71.98 0.65 -2.44 16 2 C -0.08 -2.52 2.27 -10.76 -0.02 -2.55 16 3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.12 -4.57 5.36 30.67 0.16 -4.41 16 5 C 0.17 8.44 5.31 86.36 0.46 8.90 16 6 N -0.61 -32.76 2.99 -699.10 -2.09 -34.86 16 7 C -0.27 -16.18 9.59 84.03 0.81 -15.37 16 8 H 0.05 3.04 7.89 -2.91 -0.02 3.02 16 9 C -0.04 -2.48 4.91 84.86 0.42 -2.07 16 10 N -0.93 -55.94 11.19 21.65 0.24 -55.70 16 11 Si 0.97 47.23 29.59 68.60 2.03 49.26 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 15 C 0.15 6.79 6.10 86.36 0.53 7.31 16 16 C 0.15 5.55 2.07 45.07 0.09 5.65 16 17 H 0.05 2.29 7.57 -2.39 -0.02 2.27 16 18 N -0.70 -19.98 4.37 -442.17 -1.93 -21.91 16 19 C 0.53 16.99 7.58 87.66 0.66 17.65 16 20 O -0.59 -25.61 16.01 -3.03 -0.05 -25.66 16 21 C -0.16 -3.52 5.38 -11.54 -0.06 -3.58 16 22 H 0.16 2.32 5.96 -2.39 -0.01 2.31 16 23 C -0.14 -3.10 5.88 -9.25 -0.05 -3.16 16 24 H 0.09 2.56 7.82 -2.39 -0.02 2.54 16 25 C -0.14 -2.90 6.40 -8.36 -0.05 -2.95 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 C -0.06 -0.84 5.21 -6.52 -0.03 -0.88 16 28 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 29 C -0.12 -1.58 6.20 32.15 0.20 -1.38 16 30 C -0.12 -1.60 6.21 32.14 0.20 -1.40 16 31 C -0.07 -0.98 5.17 -7.39 -0.04 -1.02 16 32 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 33 C -0.13 -1.37 6.23 33.38 0.21 -1.16 16 34 H 0.07 1.33 7.36 -2.39 -0.02 1.31 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.06 3.08 6.04 -2.38 -0.01 3.07 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.02 1.27 7.93 -2.39 -0.02 1.25 16 44 H 0.42 8.44 8.31 -92.71 -0.77 7.67 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.85 8.04 -2.39 -0.02 0.83 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.05 0.85 8.04 -2.39 -0.02 0.83 16 49 H 0.08 0.80 5.90 -2.39 -0.01 0.79 16 50 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -75.14 379.37 2.47 -72.68 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.15 Total: 19.06 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 4.12 Total: -2.86 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -3.78 Total: -112.47 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -75.14 2.47 -72.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968692621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.152 kcal (2) G-P(sol) polarization free energy of solvation -75.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds