Wall clock time and date at job start Tue Mar 31 2020 13:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.44714 * 2 1 4 4 C 1.53040 * 109.45901 * 119.97050 * 2 1 3 5 5 C 1.53192 * 109.30978 * 181.38462 * 4 2 1 6 6 N 1.46931 * 108.77743 * 305.36447 * 5 4 2 7 7 C 1.36942 * 120.62859 * 233.58652 * 6 5 4 8 8 H 1.07999 * 119.99960 * 27.71391 * 7 6 5 9 9 C 1.38815 * 119.99436 * 207.70938 * 7 6 5 10 10 N 1.31614 * 120.00066 * 17.33762 * 9 7 6 11 11 Si 1.86799 * 119.99571 * 197.33132 * 9 7 6 12 12 H 1.48496 * 109.47025 * 90.00425 * 11 9 7 13 13 H 1.48505 * 109.46831 * 210.00459 * 11 9 7 14 14 H 1.48498 * 109.47393 * 330.00176 * 11 9 7 15 15 C 1.46930 * 118.73651 * 53.61059 * 6 5 4 16 16 C 1.53050 * 109.46056 * 240.04012 * 2 1 3 17 17 H 1.09000 * 109.52283 * 58.64741 * 16 2 1 18 18 N 1.46495 * 109.49422 * 298.56623 * 16 2 1 19 19 C 1.34776 * 119.99819 * 155.16200 * 18 16 2 20 20 O 1.21278 * 120.00211 * 359.97438 * 19 18 16 21 21 C 1.50709 * 120.00040 * 179.97438 * 19 18 16 22 22 H 1.09003 * 115.47286 * 34.69719 * 21 19 18 23 23 C 1.52996 * 117.42727 * 179.97438 * 21 19 18 24 24 H 1.08998 * 119.99296 * 355.25838 * 23 21 19 25 25 C 1.54583 * 60.92154 * 108.18135 * 23 21 19 26 26 H 1.09000 * 122.51886 * 250.45677 * 25 23 21 27 27 C 1.55926 * 104.64427 * 113.25940 * 25 23 21 28 28 H 1.09004 * 116.52585 * 199.60536 * 27 25 23 29 29 C 1.55923 * 104.50004 * 70.27385 * 27 25 23 30 30 C 1.54581 * 104.64183 * 289.71751 * 29 27 25 31 31 C 1.55925 * 104.64433 * 0.02562 * 30 29 27 32 32 H 1.09008 * 116.52750 * 199.59832 * 31 30 29 33 33 C 1.56947 * 100.65147 * 326.21504 * 31 30 29 34 34 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 35 35 H 1.08992 * 109.47358 * 299.96296 * 1 2 3 36 36 H 1.08998 * 109.47103 * 59.96234 * 1 2 3 37 37 H 1.09006 * 109.49455 * 61.43797 * 4 2 1 38 38 H 1.08994 * 109.50024 * 301.33630 * 4 2 1 39 39 H 1.09005 * 109.58564 * 185.57624 * 5 4 2 40 40 H 1.08995 * 109.70309 * 65.22457 * 5 4 2 41 41 H 0.97005 * 119.99963 * 179.97438 * 10 9 7 42 42 H 1.08997 * 109.58008 * 186.60177 * 15 6 5 43 43 H 1.08998 * 109.70153 * 66.24676 * 15 6 5 44 44 H 0.96999 * 120.00541 * 335.16037 * 18 16 2 45 45 H 1.08996 * 110.40359 * 48.51200 * 29 27 25 46 46 H 1.09000 * 110.39922 * 170.81779 * 29 27 25 47 47 H 1.09004 * 110.40515 * 241.21113 * 30 29 27 48 48 H 1.09000 * 110.39918 * 118.80046 * 30 29 27 49 49 H 1.09004 * 112.02172 * 170.30244 * 33 31 30 50 50 H 1.08992 * 112.02701 * 296.75200 * 33 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6887 1.2642 6 7 4.0679 -1.2488 -0.0002 7 6 4.9765 -2.2734 -0.0002 8 1 5.0094 -2.9659 0.8279 9 6 5.8550 -2.4218 -1.0647 10 7 6.0605 -1.4198 -1.8930 11 14 6.7458 -4.0436 -1.3213 12 1 5.9293 -4.9238 -2.1952 13 1 8.0604 -3.7900 -1.9637 14 1 6.9557 -4.7061 -0.0090 15 6 3.5714 -0.6884 -1.2644 16 6 2.0399 -0.7207 -1.2502 17 1 1.6573 -0.2210 -2.1402 18 7 1.5802 -2.1115 -1.2345 19 6 1.4547 -2.7929 -2.3905 20 8 1.7220 -2.2545 -3.4439 21 6 0.9823 -4.2239 -2.3744 22 1 0.2455 -4.4657 -1.6083 23 6 0.8606 -4.9412 -3.7203 24 1 1.0369 -4.3947 -4.6468 25 6 2.0041 -5.3374 -2.7585 26 1 3.0486 -5.1004 -2.9609 27 6 1.6665 -6.7964 -2.3245 28 1 2.1427 -7.1555 -1.4121 29 6 1.9138 -7.6517 -3.6046 30 6 0.7702 -7.2555 -4.5662 31 6 -0.0600 -6.1978 -3.7768 32 1 -1.0806 -6.0256 -4.1190 33 6 0.0983 -6.7390 -2.3121 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3633 0.5132 0.8902 36 1 -0.3633 0.5144 -0.8896 37 1 1.6978 -1.7558 1.2381 38 1 1.6573 -0.2209 2.1398 39 1 3.9417 -1.2847 2.0983 40 1 3.9164 0.3400 1.3685 41 1 6.6747 -1.5234 -2.6366 42 1 3.9417 -1.2843 -2.0985 43 1 3.9142 0.3408 -1.3699 44 1 1.3661 -2.5421 -0.3921 45 1 2.8812 -7.4076 -4.0436 46 1 1.8622 -8.7143 -3.3674 47 1 0.1543 -8.1234 -4.8022 48 1 1.1753 -6.8168 -5.4780 49 1 -0.2791 -6.0329 -1.5724 50 1 -0.3469 -7.7264 -2.1908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968692622.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:20 Heat of formation + Delta-G solvation = 16.898875 kcal Electronic energy + Delta-G solvation = -28814.424927 eV Core-core repulsion = 25228.645181 eV Total energy + Delta-G solvation = -3585.779746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.12346 -39.24843 -37.35469 -34.09150 -33.21994 -32.67064 -30.98893 -29.22265 -28.92786 -28.04608 -27.31339 -24.61005 -23.85151 -22.10786 -21.55923 -21.05883 -20.57384 -18.92613 -18.61623 -18.49261 -17.25555 -16.61911 -15.94076 -15.54152 -15.01800 -14.88055 -14.26245 -14.04630 -13.80297 -13.62510 -13.24178 -13.04418 -12.96963 -12.56575 -12.48928 -12.21447 -11.93175 -11.56145 -11.53240 -11.42094 -11.35547 -11.25793 -11.16980 -11.02089 -10.89614 -10.84567 -10.71909 -10.47813 -10.29284 -10.19449 -9.89704 -9.68646 -9.62031 -9.48586 -9.45780 -9.13749 -8.42509 -8.25816 -6.61770 -5.73486 -3.16093 3.01404 3.39350 3.45534 3.47397 3.65466 4.11686 4.44823 4.48047 4.52480 4.53925 5.08672 5.16144 5.19225 5.20641 5.24166 5.27358 5.29725 5.36005 5.37249 5.42894 5.45858 5.52980 5.58592 5.59282 5.77288 5.90265 5.93229 5.95202 5.96458 6.03024 6.06913 6.10819 6.15104 6.17074 6.31244 6.32694 6.37986 6.40648 6.45637 6.47705 6.58804 6.70700 6.77807 6.92046 7.06683 7.44370 7.71806 7.84176 8.22939 8.49977 8.93247 9.24879 9.89324 10.45086 11.34325 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.010882 B = 0.005689 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.497788 B = 4920.214032 C = 6583.281359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.586 5.586 7 C -0.251 4.251 8 H 0.063 0.937 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.280 1.280 15 C 0.161 3.839 16 C 0.126 3.874 17 H 0.074 0.926 18 N -0.694 5.694 19 C 0.544 3.456 20 O -0.549 6.549 21 C -0.160 4.160 22 H 0.118 0.882 23 C -0.131 4.131 24 H 0.120 0.880 25 C -0.130 4.130 26 H 0.119 0.881 27 C -0.073 4.073 28 H 0.101 0.899 29 C -0.118 4.118 30 C -0.115 4.115 31 C -0.075 4.075 32 H 0.098 0.902 33 C -0.137 4.137 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.017 0.983 41 H 0.253 0.747 42 H 0.097 0.903 43 H 0.023 0.977 44 H 0.394 0.606 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.253 -7.735 1.001 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.380 4.380 8 H 0.081 0.919 9 C -0.193 4.193 10 N -0.542 5.542 11 Si 0.726 3.274 12 H -0.214 1.214 13 H -0.219 1.219 14 H -0.205 1.205 15 C 0.034 3.966 16 C 0.020 3.980 17 H 0.092 0.908 18 N -0.343 5.343 19 C 0.330 3.670 20 O -0.427 6.427 21 C -0.181 4.181 22 H 0.135 0.865 23 C -0.150 4.150 24 H 0.138 0.862 25 C -0.149 4.149 26 H 0.137 0.863 27 C -0.091 4.091 28 H 0.119 0.881 29 C -0.156 4.156 30 C -0.153 4.153 31 C -0.093 4.093 32 H 0.116 0.884 33 C -0.174 4.174 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.115 0.885 43 H 0.041 0.959 44 H 0.229 0.771 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.899 -7.328 0.104 15.713 hybrid contribution 0.565 -0.870 0.247 1.067 sum -13.334 -8.198 0.351 15.656 Atomic orbital electron populations 1.21841 0.96047 1.01329 1.00874 1.21311 0.94555 0.99840 0.95588 0.90554 1.22072 0.99207 0.99429 0.96046 1.20925 0.90723 0.96489 0.90279 1.43972 1.48232 1.39570 0.99126 1.19080 1.09834 1.03012 1.06112 0.91906 1.24987 0.97221 0.97140 0.99906 1.70005 1.37521 1.28912 1.17766 0.86389 0.78933 0.84156 0.77905 1.21377 1.21882 1.20527 1.21187 0.86801 0.97654 0.90968 1.21764 0.98826 0.80669 0.96704 0.90828 1.45709 1.66716 1.13792 1.08107 1.19339 0.77317 0.86336 0.84013 1.90656 1.50939 1.69986 1.31164 1.22715 1.03457 0.91307 1.00660 0.86467 1.23551 0.99682 0.97672 0.94062 0.86217 1.24007 0.95738 0.91775 1.03352 0.86318 1.23163 0.95368 0.92917 0.97656 0.88083 1.22530 0.98923 0.98827 0.95310 1.22500 0.96700 0.97813 0.98281 1.23167 0.97438 0.93042 0.95627 0.88358 1.23741 0.96007 1.00841 0.96798 0.93054 0.93215 0.93158 0.92690 0.92861 0.92890 0.96504 0.93668 0.88513 0.95892 0.77093 0.91487 0.91733 0.91837 0.91549 0.90666 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.05 37.16 0.34 -1.53 16 2 C -0.09 -1.49 2.48 -90.57 -0.22 -1.71 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 4 C -0.13 -2.03 5.20 -26.61 -0.14 -2.17 16 5 C 0.14 2.85 6.52 -3.71 -0.02 2.82 16 6 N -0.59 -14.23 2.91 -172.32 -0.50 -14.73 16 7 C -0.25 -6.78 9.59 -15.06 -0.14 -6.92 16 8 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 9 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 10 N -0.90 -26.74 11.19 55.49 0.62 -26.12 16 11 Si 0.90 22.10 29.59 -169.99 -5.03 17.07 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 15 C 0.16 3.89 4.91 -3.71 -0.02 3.88 16 16 C 0.13 2.44 2.24 -67.81 -0.15 2.29 16 17 H 0.07 1.49 7.58 -51.93 -0.39 1.10 16 18 N -0.69 -12.58 4.25 -53.69 -0.23 -12.81 16 19 C 0.54 10.52 7.63 -10.98 -0.08 10.44 16 20 O -0.55 -12.73 16.01 5.56 0.09 -12.64 16 21 C -0.16 -2.48 5.48 -90.20 -0.49 -2.98 16 22 H 0.12 1.52 6.03 -51.93 -0.31 1.20 16 23 C -0.13 -1.90 5.83 -88.25 -0.51 -2.41 16 24 H 0.12 1.95 7.82 -51.93 -0.41 1.54 16 25 C -0.13 -2.03 6.37 -86.66 -0.55 -2.58 16 26 H 0.12 2.24 8.14 -51.93 -0.42 1.82 16 27 C -0.07 -0.89 5.18 -85.37 -0.44 -1.34 16 28 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 29 C -0.12 -1.32 6.21 -24.34 -0.15 -1.48 16 30 C -0.12 -1.20 6.21 -24.34 -0.15 -1.36 16 31 C -0.07 -0.82 5.17 -85.38 -0.44 -1.26 16 32 H 0.10 0.96 8.14 -51.92 -0.42 0.53 16 33 C -0.14 -1.43 6.23 -22.47 -0.14 -1.57 16 34 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.86 6.40 -51.93 -0.33 0.53 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.10 2.77 6.04 -51.93 -0.31 2.46 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.39 6.45 6.64 -40.82 -0.27 6.18 16 45 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.72 8.04 -51.93 -0.42 0.31 16 49 H 0.07 0.78 5.92 -51.93 -0.31 0.47 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -31.17 376.34 -11.40 -42.57 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -8.60 Total: 8.78 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.42 Total: -7.79 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.11 Total: -53.66 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.17 -11.40 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968692622.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.470 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds