Wall clock time and date at job start Tue Mar 31 2020 13:20:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.70362 * 2 1
4 4 C 1.53623 * 109.66560 * 120.59280 * 2 1 3
5 5 C 1.53035 * 109.24365 * 174.54695 * 4 2 1
6 6 H 1.09007 * 109.44851 * 58.52179 * 5 4 2
7 7 N 1.46501 * 109.46401 * 178.48814 * 5 4 2
8 8 C 1.36930 * 120.00329 * 205.06827 * 7 5 4
9 9 H 1.07997 * 119.99888 * 0.02562 * 8 7 5
10 10 C 1.38815 * 120.00293 * 180.02562 * 8 7 5
11 11 N 1.31620 * 119.99941 * 359.97438 * 10 8 7
12 12 Si 1.86799 * 120.00233 * 180.02562 * 10 8 7
13 13 H 1.48503 * 109.47021 * 60.00101 * 12 10 8
14 14 H 1.48496 * 109.47026 * 179.97438 * 12 10 8
15 15 H 1.48495 * 109.47188 * 299.99988 * 12 10 8
16 16 C 1.53043 * 109.53870 * 298.50780 * 5 4 2
17 17 C 1.53203 * 109.30956 * 61.36656 * 16 5 4
18 18 N 1.46924 * 108.77149 * 305.36350 * 17 16 5
19 19 C 1.34776 * 120.62968 * 233.58325 * 18 17 16
20 20 O 1.21283 * 120.00158 * 174.82152 * 19 18 17
21 21 C 1.50695 * 119.99958 * 354.82490 * 19 18 17
22 22 H 1.08999 * 115.51077 * 325.35667 * 21 19 18
23 23 C 1.55940 * 117.10741 * 111.49222 * 21 19 18
24 24 H 1.09002 * 120.18562 * 355.48591 * 23 21 19
25 25 C 1.53002 * 117.43115 * 179.97438 * 21 19 18
26 26 H 1.09008 * 119.98557 * 5.86052 * 25 21 19
27 27 C 1.55926 * 117.17661 * 160.66599 * 25 21 19
28 28 H 1.09009 * 115.92035 * 263.66610 * 27 25 21
29 29 C 1.55924 * 104.50128 * 134.78394 * 27 25 21
30 30 C 1.56533 * 104.82100 * 289.99155 * 29 27 25
31 31 C 1.55924 * 103.72323 * 359.59576 * 30 29 27
32 32 H 1.08997 * 115.91811 * 199.69643 * 31 30 29
33 33 C 1.56946 * 100.65414 * 30.72180 * 27 25 21
34 34 H 1.08998 * 109.47159 * 176.16414 * 1 2 3
35 35 H 1.09006 * 109.46939 * 296.16118 * 1 2 3
36 36 H 1.08994 * 109.47066 * 56.16113 * 1 2 3
37 37 H 1.09005 * 109.63730 * 54.55387 * 4 2 1
38 38 H 1.08994 * 109.45950 * 294.43152 * 4 2 1
39 39 H 0.97003 * 119.99669 * 25.07355 * 7 5 4
40 40 H 0.97000 * 120.00593 * 179.97438 * 11 10 8
41 41 H 1.09000 * 109.50025 * 301.41419 * 16 5 4
42 42 H 1.09000 * 109.52392 * 181.32846 * 16 5 4
43 43 H 1.08997 * 109.58389 * 185.57906 * 17 16 5
44 44 H 1.08994 * 109.58627 * 65.15159 * 17 16 5
45 45 H 1.08997 * 110.40208 * 48.51147 * 29 27 25
46 46 H 1.09000 * 110.40452 * 170.93209 * 29 27 25
47 47 H 1.09000 * 110.38052 * 241.32705 * 30 29 27
48 48 H 1.08999 * 111.39813 * 118.35489 * 30 29 27
49 49 H 1.08998 * 112.03225 * 170.30289 * 33 27 25
50 50 H 1.09004 * 112.03078 * 296.83229 * 33 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0470 -0.7362 1.2453
5 6 3.5712 -0.8498 1.1676
6 1 4.0064 0.1472 1.0988
7 7 4.0727 -1.5194 2.3703
8 6 5.3566 -1.2984 2.7919
9 1 5.9994 -0.6302 2.2381
10 6 5.8320 -1.9332 3.9312
11 7 5.0485 -2.7472 4.6064
12 14 7.5833 -1.6313 4.5068
13 1 7.7663 -0.1867 4.7983
14 1 7.8429 -2.4208 5.7374
15 1 8.5325 -2.0457 3.4427
16 6 3.9615 -1.6629 -0.0688
17 6 3.4656 -0.9421 -1.3265
18 7 2.0225 -0.6996 -1.1945
19 6 1.1674 -1.1062 -2.1536
20 8 -0.0284 -0.9850 -1.9910
21 6 1.6970 -1.7115 -3.4280
22 1 2.6389 -1.2978 -3.7881
23 6 1.4251 -3.2293 -3.6603
24 1 0.9385 -3.8236 -2.8869
25 6 0.6742 -2.1532 -4.4766
26 1 -0.3844 -1.9387 -4.3295
27 6 1.1866 -2.3379 -5.9377
28 1 1.0362 -1.4900 -6.6061
29 6 0.5645 -3.6903 -6.4016
30 6 1.3178 -4.7831 -5.5718
31 6 2.3212 -3.9629 -4.7047
32 1 3.1668 -4.5192 -4.3003
33 6 2.6698 -2.7768 -5.6717
34 1 -0.3633 -1.0253 -0.0687
35 1 -0.3633 0.4531 0.9224
36 1 -0.3633 0.5722 -0.8535
37 1 1.6096 -1.7337 1.2890
38 1 1.7690 -0.1776 2.1389
39 1 3.4953 -2.1193 2.8678
40 1 5.3807 -3.1911 5.4023
41 1 3.5061 -2.6516 -0.0128
42 1 5.0460 -1.7637 -0.1111
43 1 3.6531 -1.5638 -2.2018
44 1 3.9877 0.0088 -1.4324
45 1 -0.5012 -3.7161 -6.1744
46 1 0.7302 -3.8386 -7.4687
47 1 1.8547 -5.4608 -6.2355
48 1 0.6322 -5.3410 -4.9340
49 1 3.1633 -3.1218 -6.5803
50 1 3.2436 -1.9967 -5.1713
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001044878621.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:20:16
Heat of formation + Delta-G solvation = 26.318134 kcal
Electronic energy + Delta-G solvation = -27815.285571 eV
Core-core repulsion = 24229.914274 eV
Total energy + Delta-G solvation = -3585.371297 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.47802 -39.89340 -37.29836 -34.47964 -33.83401 -32.21547 -31.91058 -29.27761
-29.21250 -28.23298 -27.00605 -24.97480 -24.08533 -22.89292 -21.94993 -21.59430
-20.23963 -19.64344 -18.81978 -18.46458 -17.24733 -17.03776 -16.18993 -15.89314
-15.48191 -15.02719 -14.81277 -14.54880 -13.88498 -13.68507 -13.41752 -13.27013
-13.02127 -12.73398 -12.67194 -12.37594 -12.09234 -12.02203 -11.70438 -11.68033
-11.55566 -11.53122 -11.38285 -11.35274 -11.09238 -10.89960 -10.82919 -10.74265
-10.57699 -10.41223 -10.27160 -9.95666 -9.82610 -9.78358 -9.69599 -8.91693
-8.88970 -8.34764 -6.98589 -5.78186 -3.07447 2.51174 3.03110 3.42018
3.46562 3.47736 3.67367 4.04328 4.20792 4.27095 4.56260 4.72283
4.75397 4.82643 4.90191 4.99645 5.01221 5.13097 5.16718 5.17905
5.21780 5.32021 5.33895 5.40336 5.50887 5.52810 5.58985 5.66124
5.69492 5.70653 5.81413 5.85355 5.86060 5.88166 5.94810 5.99398
6.03814 6.06294 6.13388 6.16529 6.28295 6.41203 6.47117 6.51789
6.56509 6.78460 6.93499 7.06567 7.61195 7.66861 8.35327 8.40029
9.51066 10.08899 10.43693 11.44328
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.017615 B = 0.003074 C = 0.002776
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1589.138194 B = 9107.239779 C =10083.803627
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.146 3.854
3 H 0.070 0.930
4 C -0.134 4.134
5 C 0.179 3.821
6 H 0.047 0.953
7 N -0.724 5.724
8 C -0.240 4.240
9 H 0.070 0.930
10 C -0.013 4.013
11 N -0.933 5.933
12 Si 0.906 3.094
13 H -0.286 1.286
14 H -0.291 1.291
15 H -0.286 1.286
16 C -0.149 4.149
17 C 0.108 3.892
18 N -0.599 5.599
19 C 0.545 3.455
20 O -0.541 6.541
21 C -0.169 4.169
22 H 0.124 0.876
23 C -0.133 4.133
24 H 0.116 0.884
25 C -0.126 4.126
26 H 0.120 0.880
27 C -0.075 4.075
28 H 0.100 0.900
29 C -0.117 4.117
30 C -0.117 4.117
31 C -0.074 4.074
32 H 0.101 0.899
33 C -0.136 4.136
34 H 0.069 0.931
35 H 0.041 0.959
36 H 0.066 0.934
37 H 0.063 0.937
38 H 0.074 0.926
39 H 0.384 0.616
40 H 0.256 0.744
41 H 0.059 0.941
42 H 0.074 0.926
43 H 0.079 0.921
44 H 0.064 0.936
45 H 0.065 0.935
46 H 0.065 0.935
47 H 0.065 0.935
48 H 0.068 0.932
49 H 0.073 0.927
50 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.631 0.578 -22.555 23.818
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.043 3.957
3 H 0.088 0.912
4 C -0.173 4.173
5 C 0.069 3.931
6 H 0.065 0.935
7 N -0.364 5.364
8 C -0.371 4.371
9 H 0.088 0.912
10 C -0.209 4.209
11 N -0.581 5.581
12 Si 0.737 3.263
13 H -0.213 1.213
14 H -0.217 1.217
15 H -0.213 1.213
16 C -0.190 4.190
17 C -0.015 4.015
18 N -0.331 5.331
19 C 0.333 3.667
20 O -0.420 6.420
21 C -0.190 4.190
22 H 0.141 0.859
23 C -0.152 4.152
24 H 0.134 0.866
25 C -0.144 4.144
26 H 0.138 0.862
27 C -0.093 4.093
28 H 0.118 0.882
29 C -0.154 4.154
30 C -0.155 4.155
31 C -0.092 4.092
32 H 0.119 0.881
33 C -0.173 4.173
34 H 0.088 0.912
35 H 0.060 0.940
36 H 0.085 0.915
37 H 0.082 0.918
38 H 0.093 0.907
39 H 0.217 0.783
40 H 0.066 0.934
41 H 0.078 0.922
42 H 0.093 0.907
43 H 0.097 0.903
44 H 0.083 0.917
45 H 0.084 0.916
46 H 0.084 0.916
47 H 0.084 0.916
48 H 0.086 0.914
49 H 0.092 0.908
50 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -8.093 0.685 -22.382 23.810
hybrid contribution 1.000 -0.110 0.713 1.233
sum -7.093 0.575 -21.669 22.808
Atomic orbital electron populations
1.22181 0.92896 1.03614 1.00282 1.21412 0.95371 0.94942 0.83928
0.91223 1.22361 0.97518 1.00873 0.96536 1.20164 0.90893 0.94933
0.87144 0.93528 1.42423 1.13003 1.54000 1.26973 1.19185 0.89204
1.22020 1.06725 0.91241 1.24748 0.98155 0.99800 0.98201 1.69652
1.35520 1.33217 1.19693 0.86282 0.84594 0.77466 0.77921 1.21281
1.21717 1.21271 1.22657 1.01586 1.00036 0.94756 1.21860 0.79432
1.00392 0.99800 1.48109 1.07675 1.57356 1.19972 1.19536 0.85962
0.77657 0.83535 1.90725 1.15676 1.56150 1.79447 1.22867 1.01854
0.98261 0.95984 0.85870 1.24056 1.02523 0.88232 1.00375 0.86569
1.23567 0.97872 1.02083 0.90924 0.86187 1.23178 0.94909 0.97144
0.94089 0.88170 1.22844 0.99737 0.93770 0.99085 1.22858 0.97791
0.97007 0.97809 1.23180 0.96648 0.95729 0.93612 0.88058 1.23731
0.96290 0.97928 0.99363 0.91163 0.93990 0.91525 0.91830 0.90742
0.78273 0.93441 0.92194 0.90703 0.90268 0.91732 0.91596 0.91639
0.91586 0.91360 0.90794 0.90598
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.97 7.60 37.16 0.28 -1.69 16
2 C 0.15 2.19 3.51 -67.37 -0.24 1.95 16
3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
4 C -0.13 -2.28 4.86 -26.39 -0.13 -2.41 16
5 C 0.18 3.44 2.73 -67.89 -0.19 3.26 16
6 H 0.05 0.91 8.08 -51.92 -0.42 0.49 16
7 N -0.72 -17.83 5.12 -53.38 -0.27 -18.11 16
8 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16
9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
10 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16
11 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16
12 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16
13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
14 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16
15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
16 C -0.15 -2.51 5.66 -26.60 -0.15 -2.66 16
17 C 0.11 1.43 6.25 -3.71 -0.02 1.40 16
18 N -0.60 -8.52 2.97 -164.96 -0.49 -9.01 16
19 C 0.54 7.83 7.39 -10.99 -0.08 7.75 16
20 O -0.54 -9.04 11.75 5.55 0.07 -8.98 16
21 C -0.17 -1.91 4.13 -90.20 -0.37 -2.28 16
22 H 0.12 1.22 5.01 -51.93 -0.26 0.96 16
23 C -0.13 -1.40 6.32 -86.67 -0.55 -1.95 16
24 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16
25 C -0.13 -1.30 5.82 -88.25 -0.51 -1.82 16
26 H 0.12 1.41 7.83 -51.92 -0.41 1.01 16
27 C -0.08 -0.60 5.17 -85.36 -0.44 -1.04 16
28 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16
29 C -0.12 -0.85 6.26 -23.27 -0.15 -1.00 16
30 C -0.12 -0.89 6.36 -23.27 -0.15 -1.03 16
31 C -0.07 -0.62 5.13 -85.34 -0.44 -1.06 16
32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16
33 C -0.14 -1.04 6.24 -22.45 -0.14 -1.18 16
34 H 0.07 1.16 6.73 -51.93 -0.35 0.81 16
35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.07 1.02 6.77 -51.93 -0.35 0.67 16
37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
39 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16
40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
43 H 0.08 0.89 5.87 -51.93 -0.30 0.58 16
44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
45 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16
46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
48 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16
49 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
50 H 0.08 0.59 5.94 -51.93 -0.31 0.28 16
LS Contribution 374.72 15.07 5.65 5.65
Total: -1.00 -30.40 374.72 -11.46 -41.86
By element:
Atomic # 1 Polarization: 18.29 SS G_CDS: -8.60 Total: 9.69 kcal
Atomic # 6 Polarization: -7.38 SS G_CDS: -3.51 Total: -10.89 kcal
Atomic # 7 Polarization: -54.38 SS G_CDS: -0.04 Total: -54.42 kcal
Atomic # 8 Polarization: -9.04 SS G_CDS: 0.07 Total: -8.98 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -30.40 -11.46 -41.86 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001044878621.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.176 kcal
(2) G-P(sol) polarization free energy of solvation -30.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.778 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.318 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds