Wall clock time and date at job start Tue Mar 31 2020 13:20:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09000 * 109.70362 * 2 1
4 4 C 1.53623 * 109.66560 * 120.59280 * 2 1 3
5 5 C 1.53035 * 109.24365 * 174.54695 * 4 2 1
6 6 H 1.09007 * 109.44851 * 58.52179 * 5 4 2
7 7 N 1.46501 * 109.46401 * 178.48814 * 5 4 2
8 8 C 1.36930 * 120.00329 * 205.06827 * 7 5 4
9 9 H 1.07997 * 119.99888 * 0.02562 * 8 7 5
10 10 C 1.38815 * 120.00293 * 180.02562 * 8 7 5
11 11 N 1.31620 * 119.99941 * 359.97438 * 10 8 7
12 12 Si 1.86799 * 120.00233 * 180.02562 * 10 8 7
13 13 H 1.48503 * 109.47021 * 60.00101 * 12 10 8
14 14 H 1.48496 * 109.47026 * 179.97438 * 12 10 8
15 15 H 1.48495 * 109.47188 * 299.99988 * 12 10 8
16 16 C 1.53043 * 109.53870 * 298.50780 * 5 4 2
17 17 C 1.53203 * 109.30956 * 61.36656 * 16 5 4
18 18 N 1.46924 * 108.77149 * 305.36350 * 17 16 5
19 19 C 1.34776 * 120.62968 * 233.58325 * 18 17 16
20 20 O 1.21283 * 120.00158 * 174.82152 * 19 18 17
21 21 C 1.50695 * 119.99958 * 354.82490 * 19 18 17
22 22 H 1.08999 * 115.51077 * 325.35667 * 21 19 18
23 23 C 1.55940 * 117.10741 * 111.49222 * 21 19 18
24 24 H 1.09002 * 120.18562 * 355.48591 * 23 21 19
25 25 C 1.53002 * 117.43115 * 179.97438 * 21 19 18
26 26 H 1.09008 * 119.98557 * 5.86052 * 25 21 19
27 27 C 1.55926 * 117.17661 * 160.66599 * 25 21 19
28 28 H 1.09009 * 115.92035 * 263.66610 * 27 25 21
29 29 C 1.55924 * 104.50128 * 134.78394 * 27 25 21
30 30 C 1.56533 * 104.82100 * 289.99155 * 29 27 25
31 31 C 1.55924 * 103.72323 * 359.59576 * 30 29 27
32 32 H 1.08997 * 115.91811 * 199.69643 * 31 30 29
33 33 C 1.56946 * 100.65414 * 30.72180 * 27 25 21
34 34 H 1.08998 * 109.47159 * 176.16414 * 1 2 3
35 35 H 1.09006 * 109.46939 * 296.16118 * 1 2 3
36 36 H 1.08994 * 109.47066 * 56.16113 * 1 2 3
37 37 H 1.09005 * 109.63730 * 54.55387 * 4 2 1
38 38 H 1.08994 * 109.45950 * 294.43152 * 4 2 1
39 39 H 0.97003 * 119.99669 * 25.07355 * 7 5 4
40 40 H 0.97000 * 120.00593 * 179.97438 * 11 10 8
41 41 H 1.09000 * 109.50025 * 301.41419 * 16 5 4
42 42 H 1.09000 * 109.52392 * 181.32846 * 16 5 4
43 43 H 1.08997 * 109.58389 * 185.57906 * 17 16 5
44 44 H 1.08994 * 109.58627 * 65.15159 * 17 16 5
45 45 H 1.08997 * 110.40208 * 48.51147 * 29 27 25
46 46 H 1.09000 * 110.40452 * 170.93209 * 29 27 25
47 47 H 1.09000 * 110.38052 * 241.32705 * 30 29 27
48 48 H 1.08999 * 111.39813 * 118.35489 * 30 29 27
49 49 H 1.08998 * 112.03225 * 170.30289 * 33 27 25
50 50 H 1.09004 * 112.03078 * 296.83229 * 33 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0470 -0.7362 1.2453
5 6 3.5712 -0.8498 1.1676
6 1 4.0064 0.1472 1.0988
7 7 4.0727 -1.5194 2.3703
8 6 5.3566 -1.2984 2.7919
9 1 5.9994 -0.6302 2.2381
10 6 5.8320 -1.9332 3.9312
11 7 5.0485 -2.7472 4.6064
12 14 7.5833 -1.6313 4.5068
13 1 7.7663 -0.1867 4.7983
14 1 7.8429 -2.4208 5.7374
15 1 8.5325 -2.0457 3.4427
16 6 3.9615 -1.6629 -0.0688
17 6 3.4656 -0.9421 -1.3265
18 7 2.0225 -0.6996 -1.1945
19 6 1.1674 -1.1062 -2.1536
20 8 -0.0284 -0.9850 -1.9910
21 6 1.6970 -1.7115 -3.4280
22 1 2.6389 -1.2978 -3.7881
23 6 1.4251 -3.2293 -3.6603
24 1 0.9385 -3.8236 -2.8869
25 6 0.6742 -2.1532 -4.4766
26 1 -0.3844 -1.9387 -4.3295
27 6 1.1866 -2.3379 -5.9377
28 1 1.0362 -1.4900 -6.6061
29 6 0.5645 -3.6903 -6.4016
30 6 1.3178 -4.7831 -5.5718
31 6 2.3212 -3.9629 -4.7047
32 1 3.1668 -4.5192 -4.3003
33 6 2.6698 -2.7768 -5.6717
34 1 -0.3633 -1.0253 -0.0687
35 1 -0.3633 0.4531 0.9224
36 1 -0.3633 0.5722 -0.8535
37 1 1.6096 -1.7337 1.2890
38 1 1.7690 -0.1776 2.1389
39 1 3.4953 -2.1193 2.8678
40 1 5.3807 -3.1911 5.4023
41 1 3.5061 -2.6516 -0.0128
42 1 5.0460 -1.7637 -0.1111
43 1 3.6531 -1.5638 -2.2018
44 1 3.9877 0.0088 -1.4324
45 1 -0.5012 -3.7161 -6.1744
46 1 0.7302 -3.8386 -7.4687
47 1 1.8547 -5.4608 -6.2355
48 1 0.6322 -5.3410 -4.9340
49 1 3.1633 -3.1218 -6.5803
50 1 3.2436 -1.9967 -5.1713
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001044878621.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:20:15
Heat of formation + Delta-G solvation = 10.596070 kcal
Electronic energy + Delta-G solvation = -27815.967331 eV
Core-core repulsion = 24229.914274 eV
Total energy + Delta-G solvation = -3586.053056 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.31894 -40.98468 -38.66027 -36.16973 -34.74788 -33.75742 -33.29826 -31.00082
-29.86403 -28.88170 -28.37300 -26.20663 -25.61160 -24.39774 -22.88060 -22.50947
-21.61658 -20.67755 -19.55316 -19.47087 -19.07897 -18.18278 -17.08893 -16.86061
-16.71905 -16.33091 -16.20188 -15.55985 -15.45183 -15.43731 -14.73113 -14.65156
-14.08118 -13.78756 -13.72113 -13.42529 -13.30034 -13.20519 -13.07924 -12.83993
-12.68189 -12.62031 -12.39453 -12.32433 -12.21989 -12.17406 -12.06861 -11.97869
-11.94201 -11.74184 -11.69715 -11.36309 -11.21768 -10.88832 -10.70680 -10.55608
-10.07265 -9.57191 -9.01163 -7.92624 -5.21798 1.43511 1.48444 1.51238
1.57181 1.93068 2.57174 2.78700 3.22138 3.40366 3.54398 3.59181
3.71399 3.75545 3.93521 3.95496 4.02808 4.08807 4.11878 4.18299
4.25742 4.31095 4.32744 4.40074 4.49339 4.56493 4.60245 4.62360
4.69845 4.70403 4.79580 4.82662 4.89290 4.99344 5.04180 5.06351
5.09159 5.13129 5.20904 5.24023 5.24656 5.25855 5.27840 5.39695
5.40430 5.50083 5.50677 5.54461 5.70576 6.28450 6.47015 7.21044
7.34376 8.09781 8.33285 9.30951
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.017615 B = 0.003074 C = 0.002776
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1589.138194 B = 9107.239779 C =10083.803627
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.150 3.850
3 H 0.087 0.913
4 C -0.122 4.122
5 C 0.174 3.826
6 H 0.050 0.950
7 N -0.738 5.738
8 C -0.236 4.236
9 H 0.080 0.920
10 C -0.079 4.079
11 N -0.973 5.973
12 Si 0.972 3.028
13 H -0.278 1.278
14 H -0.300 1.300
15 H -0.275 1.275
16 C -0.138 4.138
17 C 0.117 3.883
18 N -0.601 5.601
19 C 0.538 3.462
20 O -0.570 6.570
21 C -0.171 4.171
22 H 0.145 0.855
23 C -0.138 4.138
24 H 0.094 0.906
25 C -0.125 4.125
26 H 0.099 0.901
27 C -0.069 4.069
28 H 0.114 0.886
29 C -0.116 4.116
30 C -0.118 4.118
31 C -0.072 4.072
32 H 0.106 0.894
33 C -0.130 4.130
34 H 0.047 0.953
35 H 0.053 0.947
36 H 0.063 0.937
37 H 0.045 0.955
38 H 0.068 0.932
39 H 0.369 0.631
40 H 0.249 0.751
41 H 0.041 0.959
42 H 0.068 0.932
43 H 0.105 0.895
44 H 0.086 0.914
45 H 0.057 0.943
46 H 0.083 0.917
47 H 0.081 0.919
48 H 0.057 0.943
49 H 0.091 0.909
50 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.159 1.538 -25.358 26.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.047 3.953
3 H 0.105 0.895
4 C -0.162 4.162
5 C 0.066 3.934
6 H 0.068 0.932
7 N -0.377 5.377
8 C -0.368 4.368
9 H 0.098 0.902
10 C -0.270 4.270
11 N -0.624 5.624
12 Si 0.801 3.199
13 H -0.204 1.204
14 H -0.226 1.226
15 H -0.201 1.201
16 C -0.179 4.179
17 C -0.006 4.006
18 N -0.333 5.333
19 C 0.328 3.672
20 O -0.451 6.451
21 C -0.191 4.191
22 H 0.163 0.837
23 C -0.156 4.156
24 H 0.112 0.888
25 C -0.144 4.144
26 H 0.117 0.883
27 C -0.087 4.087
28 H 0.132 0.868
29 C -0.153 4.153
30 C -0.155 4.155
31 C -0.090 4.090
32 H 0.124 0.876
33 C -0.167 4.167
34 H 0.066 0.934
35 H 0.071 0.929
36 H 0.082 0.918
37 H 0.064 0.936
38 H 0.087 0.913
39 H 0.200 0.800
40 H 0.058 0.942
41 H 0.060 0.940
42 H 0.086 0.914
43 H 0.123 0.877
44 H 0.104 0.896
45 H 0.076 0.924
46 H 0.101 0.899
47 H 0.099 0.901
48 H 0.076 0.924
49 H 0.109 0.891
50 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -6.615 1.676 -25.244 26.150
hybrid contribution 0.428 -0.406 1.570 1.677
sum -6.187 1.269 -23.674 24.502
Atomic orbital electron populations
1.22019 0.92868 1.02208 1.00676 1.21355 0.95289 0.95442 0.83224
0.89490 1.22214 0.96014 1.00175 0.97747 1.20407 0.92003 0.94807
0.86223 0.93189 1.42658 1.12284 1.54166 1.28624 1.19606 0.90121
1.20836 1.06201 0.90199 1.25571 1.02123 1.00426 0.98926 1.69825
1.37368 1.34986 1.20236 0.85226 0.80158 0.77387 0.77098 1.20400
1.22636 1.20127 1.22429 1.01015 0.99068 0.95398 1.21878 0.78641
1.01472 0.98560 1.48173 1.08212 1.57221 1.19712 1.20091 0.85628
0.77086 0.84386 1.90716 1.16982 1.57156 1.80218 1.22849 1.02902
0.98649 0.94721 0.83718 1.24098 1.03214 0.87918 1.00413 0.88750
1.23601 0.96747 1.01412 0.92600 0.88265 1.23246 0.95228 0.97870
0.92353 0.86837 1.22858 0.99180 0.93257 1.00036 1.22877 0.97597
0.97216 0.97823 1.23239 0.96534 0.96195 0.93008 0.87596 1.23736
0.95904 0.97337 0.99713 0.93372 0.92865 0.91847 0.93586 0.91287
0.79970 0.94186 0.94017 0.91385 0.87653 0.89552 0.92425 0.89869
0.90078 0.92421 0.89075 0.90335
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.57 7.60 71.98 0.55 -3.02 16
2 C 0.15 4.35 3.51 45.12 0.16 4.51 16
3 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16
4 C -0.12 -4.20 4.86 30.82 0.15 -4.05 16
5 C 0.17 6.63 2.73 45.02 0.12 6.75 16
6 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16
7 N -0.74 -36.87 5.12 -322.81 -1.65 -38.53 16
8 C -0.24 -12.80 9.93 84.04 0.83 -11.96 16
9 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16
10 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16
11 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16
12 Si 0.97 45.57 29.55 68.60 2.03 47.59 16
13 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16
14 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16
15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16
16 C -0.14 -4.52 5.66 30.68 0.17 -4.35 16
17 C 0.12 2.79 6.25 86.37 0.54 3.33 16
18 N -0.60 -16.31 2.97 -794.21 -2.36 -18.67 16
19 C 0.54 15.07 7.39 87.66 0.65 15.72 16
20 O -0.57 -19.24 11.75 -3.04 -0.04 -19.28 16
21 C -0.17 -3.58 4.13 -10.52 -0.04 -3.62 16
22 H 0.15 2.39 5.01 -2.39 -0.01 2.38 16
23 C -0.14 -2.79 6.32 -8.23 -0.05 -2.84 16
24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16
25 C -0.12 -2.45 5.82 -9.26 -0.05 -2.51 16
26 H 0.10 2.37 7.83 -2.38 -0.02 2.35 16
27 C -0.07 -0.92 5.17 -7.38 -0.04 -0.96 16
28 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16
29 C -0.12 -1.43 6.26 32.84 0.21 -1.22 16
30 C -0.12 -1.55 6.36 32.84 0.21 -1.34 16
31 C -0.07 -1.05 5.13 -7.37 -0.04 -1.09 16
32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16
33 C -0.13 -1.54 6.24 33.37 0.21 -1.33 16
34 H 0.05 1.63 6.73 -2.39 -0.02 1.62 16
35 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16
36 H 0.06 1.93 6.77 -2.39 -0.02 1.91 16
37 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16
38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16
39 H 0.37 20.30 7.80 -92.71 -0.72 19.57 16
40 H 0.25 14.97 8.31 -92.71 -0.77 14.19 16
41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16
42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16
43 H 0.11 2.01 5.87 -2.39 -0.01 2.00 16
44 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16
45 H 0.06 0.81 8.04 -2.39 -0.02 0.79 16
46 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
47 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
48 H 0.06 0.88 8.05 -2.39 -0.02 0.86 16
49 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
50 H 0.08 0.91 5.94 -2.38 -0.01 0.90 16
Total: -1.00 -66.80 374.72 2.51 -64.30
By element:
Atomic # 1 Polarization: 35.94 SS G_CDS: 0.20 Total: 36.14 kcal
Atomic # 6 Polarization: -16.03 SS G_CDS: 4.04 Total: -11.99 kcal
Atomic # 7 Polarization: -113.04 SS G_CDS: -3.73 Total: -116.76 kcal
Atomic # 8 Polarization: -19.24 SS G_CDS: -0.04 Total: -19.28 kcal
Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal
Total: -66.80 2.51 -64.30 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001044878621.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.894 kcal
(2) G-P(sol) polarization free energy of solvation -66.804 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.298 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.596 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds