Wall clock time and date at job start Tue Mar 31 2020 13:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.86812 * 2 1 4 4 C 1.54456 * 109.87400 * 239.00086 * 2 1 3 5 5 C 1.54396 * 102.87089 * 218.92079 * 4 2 1 6 6 C 1.54126 * 102.47326 * 34.64457 * 5 4 2 7 7 N 1.47079 * 110.00453 * 121.08767 * 2 1 3 8 8 C 1.34773 * 125.62963 * 298.50599 * 7 2 1 9 9 O 1.21613 * 120.00175 * 359.97438 * 8 7 2 10 10 C 1.47108 * 119.99876 * 179.97438 * 8 7 2 11 11 C 1.32996 * 119.99842 * 180.02562 * 10 8 7 12 12 C 1.50701 * 119.99574 * 180.02562 * 11 10 8 13 13 C 1.53008 * 117.49589 * 188.61977 * 12 11 10 14 14 C 1.53006 * 117.49510 * 120.00019 * 12 11 10 15 15 C 1.52103 * 110.50942 * 152.62353 * 5 4 2 16 16 C 1.53329 * 109.49961 * 182.57478 * 15 5 4 17 17 N 1.46936 * 108.69180 * 306.71658 * 16 15 5 18 18 C 1.36940 * 120.57775 * 234.38630 * 17 16 15 19 19 H 1.07994 * 119.99899 * 27.96430 * 18 17 16 20 20 C 1.38810 * 119.99814 * 207.96707 * 18 17 16 21 21 N 1.31614 * 120.00217 * 17.48238 * 20 18 17 22 22 Si 1.86797 * 119.99795 * 197.48451 * 20 18 17 23 23 H 1.48501 * 109.47259 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47256 * 119.99752 * 22 20 18 25 25 H 1.48502 * 109.47415 * 239.99946 * 22 20 18 26 26 C 1.46940 * 118.84399 * 54.41531 * 17 16 15 27 27 C 1.52105 * 110.51559 * 276.66947 * 5 4 2 28 28 H 1.08996 * 109.46908 * 180.99921 * 1 2 3 29 29 H 1.08998 * 109.46890 * 300.99878 * 1 2 3 30 30 H 1.08995 * 109.47250 * 60.99745 * 1 2 3 31 31 H 1.09003 * 110.73515 * 100.57806 * 4 2 1 32 32 H 1.09002 * 110.89054 * 337.33808 * 4 2 1 33 33 H 1.08993 * 110.37383 * 82.74542 * 6 5 4 34 34 H 1.08999 * 110.37498 * 205.09687 * 6 5 4 35 35 H 1.08001 * 119.99885 * 0.02562 * 10 8 7 36 36 H 1.08002 * 120.00002 * 359.97438 * 11 10 8 37 37 H 1.08998 * 115.55207 * 334.32925 * 12 11 10 38 38 H 1.09006 * 117.49317 * 0.02562 * 13 12 11 39 39 H 1.08994 * 117.49672 * 145.02006 * 13 12 11 40 40 H 1.08996 * 117.49696 * 214.97608 * 14 12 11 41 41 H 1.08993 * 117.50031 * 359.97438 * 14 12 11 42 42 H 1.09001 * 109.46926 * 62.55729 * 15 5 4 43 43 H 1.09003 * 109.46435 * 302.57916 * 15 5 4 44 44 H 1.09002 * 109.60168 * 66.47644 * 16 15 5 45 45 H 1.08997 * 109.60008 * 186.95408 * 16 15 5 46 46 H 0.97005 * 119.99981 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.60868 * 65.33629 * 26 17 16 48 48 H 1.09001 * 109.60136 * 185.82289 * 26 17 16 49 49 H 1.08999 * 109.46345 * 57.41811 * 27 5 4 50 50 H 1.08994 * 109.47062 * 297.42723 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0551 -0.7481 -1.2451 5 6 3.2733 -1.5202 -0.6941 6 6 2.8220 -1.8777 0.7356 7 7 2.0332 -0.7136 1.1836 8 6 1.8105 -0.3625 2.4656 9 8 1.1425 0.6215 2.7193 10 6 2.3756 -1.1696 3.5580 11 6 2.1554 -0.8234 4.8231 12 6 2.7348 -1.6500 5.9421 13 6 2.2842 -1.3240 7.3675 14 6 3.6964 -0.9554 6.9085 15 6 3.5198 -2.7796 -1.5106 16 6 4.6925 -3.5605 -0.9056 17 7 5.8452 -2.6578 -0.7814 18 6 7.0527 -2.9895 -1.3359 19 1 7.0901 -3.6282 -2.2059 20 6 8.2284 -2.5048 -0.7796 21 7 8.2282 -2.0271 0.4468 22 14 9.8110 -2.5305 -1.7716 23 1 9.5460 -3.1135 -3.1114 24 1 10.3207 -1.1443 -1.9265 25 1 10.8246 -3.3546 -1.0654 26 6 5.6800 -1.3933 -0.0515 27 6 4.5021 -0.6242 -0.6615 28 1 -0.3633 -1.0275 0.0179 29 1 -0.3633 0.5293 0.8809 30 1 -0.3633 0.4982 -0.8987 31 1 2.3623 -0.0433 -2.0178 32 1 1.3035 -1.4372 -1.6302 33 1 2.2027 -2.7745 0.7249 34 1 3.6877 -2.0209 1.3822 35 1 2.9692 -2.0432 3.3326 36 1 1.5621 0.0505 5.0484 37 1 2.9300 -2.6951 5.7022 38 1 1.5683 -0.5120 7.4957 39 1 2.1826 -2.1549 8.0656 40 1 4.5240 -1.5438 7.3047 41 1 3.9103 0.0991 6.7346 42 1 3.7576 -2.5055 -2.5384 43 1 2.6246 -3.4014 -1.4984 44 1 4.4133 -3.9346 0.0795 45 1 4.9505 -4.3956 -1.5568 46 1 9.0499 -1.6887 0.8357 47 1 5.4763 -1.6012 0.9989 48 1 6.5895 -0.7989 -0.1393 49 1 4.2922 0.2581 -0.0569 50 1 4.7550 -0.3175 -1.6763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086911304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:54 Heat of formation + Delta-G solvation = 22.420212 kcal Electronic energy + Delta-G solvation = -27925.735492 eV Core-core repulsion = 24340.195169 eV Total energy + Delta-G solvation = -3585.540323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50537 -38.57016 -37.56735 -35.98684 -33.12410 -32.74698 -31.35374 -30.80325 -29.97382 -27.24316 -25.80714 -24.78391 -24.05002 -22.55064 -22.40137 -21.68550 -20.81890 -19.72688 -18.90452 -18.01590 -17.13540 -16.63902 -16.00029 -15.61301 -15.00920 -14.86288 -14.37457 -14.12760 -14.01348 -13.72246 -13.48452 -13.26280 -13.13284 -12.77865 -12.72313 -12.46784 -12.25288 -11.93904 -11.76396 -11.72808 -11.54191 -11.41614 -11.25868 -11.22841 -10.97366 -10.83977 -10.73342 -10.63851 -10.44971 -10.21786 -10.17346 -9.88202 -9.62131 -9.53768 -9.37420 -9.14597 -8.47800 -8.40424 -6.68239 -5.80878 -3.22986 1.37340 3.15253 3.35604 3.38209 3.44095 3.45728 3.80536 4.37099 4.48062 4.70165 4.70487 4.73386 4.81565 4.97911 5.02532 5.19464 5.29418 5.33695 5.35657 5.38973 5.44567 5.45021 5.56511 5.65248 5.69587 5.76356 5.81278 5.90623 5.92449 5.93597 5.96811 6.05487 6.08540 6.14594 6.26474 6.28402 6.34708 6.45258 6.46320 6.59985 6.61314 6.68330 6.72516 6.83988 6.93030 7.33480 7.64195 7.72968 7.78449 8.35959 8.43269 9.19472 9.83161 10.39278 11.27306 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.004155 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.653918 B = 6736.888665 C = 8728.914615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 H 0.072 0.928 4 C -0.122 4.122 5 C -0.055 4.055 6 C 0.107 3.893 7 N -0.604 5.604 8 C 0.564 3.436 9 O -0.556 6.556 10 C -0.203 4.203 11 C -0.041 4.041 12 C -0.138 4.138 13 C -0.173 4.173 14 C -0.164 4.164 15 C -0.118 4.118 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.172 3.828 27 C -0.126 4.126 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.054 0.946 46 H 0.253 0.747 47 H 0.018 0.982 48 H 0.087 0.913 49 H 0.048 0.952 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.768 0.892 5.481 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.090 0.910 4 C -0.160 4.160 5 C -0.056 4.056 6 C -0.015 4.015 7 N -0.336 5.336 8 C 0.355 3.645 9 O -0.437 6.437 10 C -0.224 4.224 11 C -0.061 4.061 12 C -0.156 4.156 13 C -0.210 4.210 14 C -0.201 4.201 15 C -0.157 4.157 16 C 0.018 3.982 17 N -0.314 5.314 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.729 3.271 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.046 3.954 27 C -0.165 4.165 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.036 0.964 48 H 0.106 0.894 49 H 0.067 0.933 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.976 1.477 5.759 15.188 hybrid contribution 0.954 -0.066 -0.533 1.095 sum -13.022 1.411 5.225 14.102 Atomic orbital electron populations 1.22121 0.95158 1.01987 1.02501 1.21531 0.93981 0.96385 0.84728 0.90960 1.22820 0.97783 0.99340 0.96098 1.20980 0.94751 0.96556 0.93312 1.22505 0.94954 0.87460 0.96601 1.48494 1.51671 1.28778 1.04690 1.18159 0.80085 0.84437 0.81808 1.90729 1.41177 1.28142 1.83640 1.22578 1.04410 1.02513 0.92897 1.22984 0.93834 0.96858 0.92378 1.21316 1.04668 0.99821 0.89801 1.23004 0.98150 1.03718 0.96124 1.22981 0.93370 1.01795 1.01999 1.21863 0.99068 0.95292 0.99501 1.20940 0.87701 0.92482 0.97093 1.44056 1.06789 1.16516 1.64005 1.19219 0.82980 1.29261 1.06713 0.91687 1.25013 0.97607 1.01718 0.95201 1.70035 1.26755 1.45593 1.12232 0.86271 0.83692 0.77365 0.79735 1.20267 1.21588 1.21760 1.20813 0.95430 0.86890 0.92236 1.22014 0.95789 0.97317 1.01407 0.92733 0.91476 0.91970 0.90273 0.90810 0.91774 0.89412 0.85404 0.85679 0.86671 0.88471 0.88384 0.88082 0.88337 0.91778 0.92895 0.96490 0.92743 0.93700 0.96433 0.89437 0.93304 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.10 37.16 0.34 -1.66 16 2 C 0.14 1.91 3.09 -66.85 -0.21 1.70 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.12 -1.58 5.42 -25.24 -0.14 -1.72 16 5 C -0.06 -0.85 0.54 -154.10 -0.08 -0.93 16 6 C 0.11 1.60 4.50 -2.86 -0.01 1.59 16 7 N -0.60 -9.20 3.06 -164.64 -0.50 -9.70 16 8 C 0.56 9.18 7.59 -12.66 -0.10 9.08 16 9 O -0.56 -10.36 15.26 5.27 0.08 -10.28 16 10 C -0.20 -2.85 9.11 -37.80 -0.34 -3.20 16 11 C -0.04 -0.51 9.24 -36.13 -0.33 -0.84 16 12 C -0.14 -1.43 6.01 -91.76 -0.55 -1.98 16 13 C -0.17 -1.47 10.23 -26.72 -0.27 -1.75 16 14 C -0.16 -1.56 10.23 -26.72 -0.27 -1.83 16 15 C -0.12 -1.84 4.82 -27.02 -0.13 -1.97 16 16 C 0.14 2.79 6.25 -3.63 -0.02 2.77 16 17 N -0.59 -14.02 2.98 -172.13 -0.51 -14.53 16 18 C -0.25 -6.69 9.58 -15.06 -0.14 -6.84 16 19 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 20 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 21 N -0.90 -25.58 11.20 55.49 0.62 -24.96 16 22 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.17 3.91 5.02 -3.63 -0.02 3.89 16 27 C -0.13 -2.31 4.83 -27.01 -0.13 -2.44 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.96 6.90 -51.93 -0.36 0.60 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 32 H 0.07 0.85 7.71 -51.93 -0.40 0.45 16 33 H 0.06 0.88 7.97 -51.93 -0.41 0.46 16 34 H 0.09 1.47 5.26 -51.93 -0.27 1.19 16 35 H 0.13 1.70 6.89 -52.49 -0.36 1.34 16 36 H 0.13 1.61 7.49 -52.49 -0.39 1.22 16 37 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.02 0.33 7.65 -51.93 -0.40 -0.07 16 45 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.02 0.42 6.59 -51.93 -0.34 0.08 16 48 H 0.09 2.30 6.01 -51.93 -0.31 1.98 16 49 H 0.05 0.88 7.84 -51.93 -0.41 0.47 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -29.97 385.83 -10.72 -40.69 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.68 Total: 2.80 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.50 Total: -6.10 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.40 Total: -49.19 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.97 -10.72 -40.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086911304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.110 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds