Wall clock time and date at job start Tue Mar 31 2020 13:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.86812 * 2 1 4 4 C 1.54456 * 109.87400 * 239.00086 * 2 1 3 5 5 C 1.54396 * 102.87089 * 218.92079 * 4 2 1 6 6 C 1.54126 * 102.47326 * 34.64457 * 5 4 2 7 7 N 1.47079 * 110.00453 * 121.08767 * 2 1 3 8 8 C 1.34773 * 125.62963 * 298.50599 * 7 2 1 9 9 O 1.21613 * 120.00175 * 359.97438 * 8 7 2 10 10 C 1.47108 * 119.99876 * 179.97438 * 8 7 2 11 11 C 1.32996 * 119.99842 * 180.02562 * 10 8 7 12 12 C 1.50701 * 119.99574 * 180.02562 * 11 10 8 13 13 C 1.53008 * 117.49589 * 188.61977 * 12 11 10 14 14 C 1.53006 * 117.49510 * 120.00019 * 12 11 10 15 15 C 1.52103 * 110.50942 * 152.62353 * 5 4 2 16 16 C 1.53329 * 109.49961 * 182.57478 * 15 5 4 17 17 N 1.46936 * 108.69180 * 306.71658 * 16 15 5 18 18 C 1.36940 * 120.57775 * 234.38630 * 17 16 15 19 19 H 1.07994 * 119.99899 * 27.96430 * 18 17 16 20 20 C 1.38810 * 119.99814 * 207.96707 * 18 17 16 21 21 N 1.31614 * 120.00217 * 17.48238 * 20 18 17 22 22 Si 1.86797 * 119.99795 * 197.48451 * 20 18 17 23 23 H 1.48501 * 109.47259 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47256 * 119.99752 * 22 20 18 25 25 H 1.48502 * 109.47415 * 239.99946 * 22 20 18 26 26 C 1.46940 * 118.84399 * 54.41531 * 17 16 15 27 27 C 1.52105 * 110.51559 * 276.66947 * 5 4 2 28 28 H 1.08996 * 109.46908 * 180.99921 * 1 2 3 29 29 H 1.08998 * 109.46890 * 300.99878 * 1 2 3 30 30 H 1.08995 * 109.47250 * 60.99745 * 1 2 3 31 31 H 1.09003 * 110.73515 * 100.57806 * 4 2 1 32 32 H 1.09002 * 110.89054 * 337.33808 * 4 2 1 33 33 H 1.08993 * 110.37383 * 82.74542 * 6 5 4 34 34 H 1.08999 * 110.37498 * 205.09687 * 6 5 4 35 35 H 1.08001 * 119.99885 * 0.02562 * 10 8 7 36 36 H 1.08002 * 120.00002 * 359.97438 * 11 10 8 37 37 H 1.08998 * 115.55207 * 334.32925 * 12 11 10 38 38 H 1.09006 * 117.49317 * 0.02562 * 13 12 11 39 39 H 1.08994 * 117.49672 * 145.02006 * 13 12 11 40 40 H 1.08996 * 117.49696 * 214.97608 * 14 12 11 41 41 H 1.08993 * 117.50031 * 359.97438 * 14 12 11 42 42 H 1.09001 * 109.46926 * 62.55729 * 15 5 4 43 43 H 1.09003 * 109.46435 * 302.57916 * 15 5 4 44 44 H 1.09002 * 109.60168 * 66.47644 * 16 15 5 45 45 H 1.08997 * 109.60008 * 186.95408 * 16 15 5 46 46 H 0.97005 * 119.99981 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.60868 * 65.33629 * 26 17 16 48 48 H 1.09001 * 109.60136 * 185.82289 * 26 17 16 49 49 H 1.08999 * 109.46345 * 57.41811 * 27 5 4 50 50 H 1.08994 * 109.47062 * 297.42723 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0551 -0.7481 -1.2451 5 6 3.2733 -1.5202 -0.6941 6 6 2.8220 -1.8777 0.7356 7 7 2.0332 -0.7136 1.1836 8 6 1.8105 -0.3625 2.4656 9 8 1.1425 0.6215 2.7193 10 6 2.3756 -1.1696 3.5580 11 6 2.1554 -0.8234 4.8231 12 6 2.7348 -1.6500 5.9421 13 6 2.2842 -1.3240 7.3675 14 6 3.6964 -0.9554 6.9085 15 6 3.5198 -2.7796 -1.5106 16 6 4.6925 -3.5605 -0.9056 17 7 5.8452 -2.6578 -0.7814 18 6 7.0527 -2.9895 -1.3359 19 1 7.0901 -3.6282 -2.2059 20 6 8.2284 -2.5048 -0.7796 21 7 8.2282 -2.0271 0.4468 22 14 9.8110 -2.5305 -1.7716 23 1 9.5460 -3.1135 -3.1114 24 1 10.3207 -1.1443 -1.9265 25 1 10.8246 -3.3546 -1.0654 26 6 5.6800 -1.3933 -0.0515 27 6 4.5021 -0.6242 -0.6615 28 1 -0.3633 -1.0275 0.0179 29 1 -0.3633 0.5293 0.8809 30 1 -0.3633 0.4982 -0.8987 31 1 2.3623 -0.0433 -2.0178 32 1 1.3035 -1.4372 -1.6302 33 1 2.2027 -2.7745 0.7249 34 1 3.6877 -2.0209 1.3822 35 1 2.9692 -2.0432 3.3326 36 1 1.5621 0.0505 5.0484 37 1 2.9300 -2.6951 5.7022 38 1 1.5683 -0.5120 7.4957 39 1 2.1826 -2.1549 8.0656 40 1 4.5240 -1.5438 7.3047 41 1 3.9103 0.0991 6.7346 42 1 3.7576 -2.5055 -2.5384 43 1 2.6246 -3.4014 -1.4984 44 1 4.4133 -3.9346 0.0795 45 1 4.9505 -4.3956 -1.5568 46 1 9.0499 -1.6887 0.8357 47 1 5.4763 -1.6012 0.9989 48 1 6.5895 -0.7989 -0.1393 49 1 4.2922 0.2581 -0.0569 50 1 4.7550 -0.3175 -1.6763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086911304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:53 Heat of formation + Delta-G solvation = 7.699095 kcal Electronic energy + Delta-G solvation = -27926.373848 eV Core-core repulsion = 24340.195169 eV Total energy + Delta-G solvation = -3586.178679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75259 -39.86398 -38.46201 -37.49865 -34.79153 -33.84192 -32.64542 -32.29557 -31.59505 -28.75633 -26.97495 -26.16164 -25.46760 -23.92280 -23.26531 -23.02568 -22.13998 -20.74266 -20.20631 -19.44472 -18.43287 -18.22664 -17.21130 -16.84344 -16.52158 -16.13688 -15.70969 -15.41203 -15.32506 -15.18707 -14.83079 -14.77381 -14.44674 -14.14913 -14.00462 -13.55690 -13.46622 -13.18428 -13.02851 -12.98698 -12.89314 -12.59577 -12.57295 -12.41271 -12.30266 -12.26601 -12.12249 -11.96803 -11.84726 -11.80059 -11.51745 -11.36009 -11.08058 -10.94170 -10.83033 -10.49112 -10.16213 -9.59564 -8.62404 -7.84661 -5.28789 0.28637 1.45935 1.48935 1.58301 1.99994 2.21890 2.52961 2.99448 3.29045 3.35617 3.52862 3.67747 3.74891 3.86985 3.92129 3.97073 4.07261 4.14733 4.17509 4.24123 4.31143 4.37496 4.47572 4.56910 4.58111 4.72287 4.74120 4.76583 4.76750 4.83099 4.93928 4.96803 4.97718 5.05627 5.08940 5.11769 5.19753 5.22799 5.25733 5.31240 5.35790 5.39863 5.43746 5.44230 5.54834 5.57395 5.68563 5.80259 6.42318 6.50918 7.12773 7.18350 7.91309 8.41649 9.21044 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.004155 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.653918 B = 6736.888665 C = 8728.914615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.130 3.870 3 H 0.057 0.943 4 C -0.107 4.107 5 C -0.054 4.054 6 C 0.113 3.887 7 N -0.605 5.605 8 C 0.557 3.443 9 O -0.588 6.588 10 C -0.226 4.226 11 C -0.022 4.022 12 C -0.156 4.156 13 C -0.155 4.155 14 C -0.169 4.169 15 C -0.104 4.104 16 C 0.138 3.862 17 N -0.608 5.608 18 C -0.257 4.257 19 H 0.067 0.933 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.960 3.040 23 H -0.265 1.265 24 H -0.294 1.294 25 H -0.294 1.294 26 C 0.183 3.817 27 C -0.111 4.111 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.019 0.981 45 H 0.054 0.946 46 H 0.247 0.753 47 H -0.002 1.002 48 H 0.045 0.955 49 H 0.045 0.955 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 -0.131 4.615 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 H 0.075 0.925 4 C -0.144 4.144 5 C -0.055 4.055 6 C -0.009 4.009 7 N -0.336 5.336 8 C 0.349 3.651 9 O -0.471 6.471 10 C -0.247 4.247 11 C -0.042 4.042 12 C -0.174 4.174 13 C -0.192 4.192 14 C -0.205 4.205 15 C -0.143 4.143 16 C 0.013 3.987 17 N -0.331 5.331 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.789 3.211 23 H -0.190 1.190 24 H -0.221 1.221 25 H -0.221 1.221 26 C 0.057 3.943 27 C -0.150 4.150 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.016 0.984 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.783 0.429 4.859 16.520 hybrid contribution 1.507 0.242 -0.190 1.538 sum -14.276 0.671 4.669 15.035 Atomic orbital electron populations 1.22034 0.93690 1.02498 1.02562 1.21688 0.95156 0.95729 0.84740 0.92516 1.22763 0.96703 0.99457 0.95526 1.20905 0.94318 0.96350 0.93964 1.22443 0.94535 0.88191 0.95751 1.48568 1.51328 1.28856 1.04867 1.18520 0.79737 0.84243 0.82566 1.90701 1.42788 1.29522 1.84133 1.22540 1.06030 1.03207 0.92926 1.23152 0.92171 0.96204 0.92647 1.21377 1.06098 0.99845 0.90101 1.23122 0.97258 1.04220 0.94559 1.23065 0.94354 1.01556 1.01575 1.21728 0.98706 0.95084 0.98798 1.21139 0.87562 0.92442 0.97538 1.44295 1.07335 1.17620 1.63890 1.19551 0.84252 1.28392 1.06555 0.91482 1.25709 1.00473 1.02298 0.96028 1.70186 1.27014 1.47155 1.13759 0.85318 0.80142 0.76815 0.78866 1.18955 1.22098 1.22095 1.20529 0.95365 0.86801 0.91628 1.21769 0.95557 0.97204 1.00437 0.91817 0.93827 0.89583 0.89268 0.88011 0.89515 0.91750 0.85025 0.86279 0.86087 0.87945 0.86467 0.87099 0.88897 0.91779 0.89065 0.96293 0.92731 0.94350 0.98441 0.93608 0.93590 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.10 71.98 0.66 -2.75 16 2 C 0.13 3.39 3.09 45.38 0.14 3.53 16 3 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.11 -2.39 5.42 31.56 0.17 -2.22 16 5 C -0.05 -1.56 0.54 -51.92 -0.03 -1.59 16 6 C 0.11 3.23 4.50 86.55 0.39 3.62 16 7 N -0.60 -17.99 3.06 -793.05 -2.43 -20.42 16 8 C 0.56 18.34 7.59 86.57 0.66 19.00 16 9 O -0.59 -22.36 15.26 -4.07 -0.06 -22.43 16 10 C -0.23 -6.46 9.11 23.43 0.21 -6.25 16 11 C -0.02 -0.55 9.24 24.52 0.23 -0.32 16 12 C -0.16 -3.11 6.01 -11.53 -0.07 -3.18 16 13 C -0.15 -2.36 10.23 30.60 0.31 -2.04 16 14 C -0.17 -3.03 10.23 30.60 0.31 -2.72 16 15 C -0.10 -2.92 4.82 30.41 0.15 -2.77 16 16 C 0.14 5.16 6.25 86.41 0.54 5.70 16 17 N -0.61 -29.03 2.98 -698.50 -2.08 -31.11 16 18 C -0.26 -13.75 9.58 84.03 0.80 -12.95 16 19 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 20 C -0.05 -2.75 4.90 84.86 0.42 -2.33 16 21 N -0.93 -54.96 11.20 21.65 0.24 -54.71 16 22 Si 0.96 44.48 29.59 68.60 2.03 46.51 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 C 0.18 8.57 5.02 86.41 0.43 9.01 16 27 C -0.11 -4.04 4.83 30.41 0.15 -3.89 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.21 6.90 -2.39 -0.02 1.19 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.88 8.01 -2.39 -0.02 1.86 16 32 H 0.10 1.80 7.71 -2.39 -0.02 1.78 16 33 H 0.09 2.12 7.97 -2.39 -0.02 2.10 16 34 H 0.06 2.17 5.26 -2.39 -0.01 2.16 16 35 H 0.13 3.58 6.89 -2.91 -0.02 3.56 16 36 H 0.12 3.12 7.49 -2.91 -0.02 3.10 16 37 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 44 H 0.02 0.71 7.65 -2.39 -0.02 0.69 16 45 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 46 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 47 H 0.00 -0.12 6.59 -2.39 -0.02 -0.13 16 48 H 0.05 2.52 6.01 -2.39 -0.01 2.51 16 49 H 0.05 1.68 7.84 -2.39 -0.02 1.66 16 50 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -67.12 385.83 4.07 -63.05 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.90 Total: 21.25 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 5.47 Total: -2.14 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -4.27 Total: -106.24 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.12 4.07 -63.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086911304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.751 kcal (2) G-P(sol) polarization free energy of solvation -67.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds