Wall clock time and date at job start Tue Mar 31 2020 13:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.31967 * 2 1 4 4 C 1.55027 * 110.35400 * 122.20541 * 2 1 3 5 5 C 1.54525 * 101.52606 * 155.35163 * 4 2 1 6 6 C 1.53678 * 103.65010 * 325.16751 * 5 4 2 7 7 N 1.47178 * 107.10906 * 21.55185 * 6 5 4 8 8 C 1.34783 * 125.66455 * 181.52913 * 7 6 5 9 9 O 1.21279 * 120.00302 * 179.97438 * 8 7 6 10 10 C 1.50702 * 119.99441 * 359.97438 * 8 7 6 11 11 C 1.54636 * 111.03624 * 292.01800 * 10 8 7 12 12 C 1.51099 * 104.72666 * 217.33817 * 11 10 8 13 13 C 1.30522 * 111.10690 * 16.43996 * 12 11 10 14 14 C 1.51102 * 111.10059 * 359.97438 * 13 12 11 15 15 C 1.52276 * 110.16937 * 83.59631 * 5 4 2 16 16 C 1.53314 * 109.41913 * 62.85196 * 15 5 4 17 17 N 1.46928 * 108.71198 * 53.51759 * 16 15 5 18 18 C 1.36940 * 120.56745 * 125.76428 * 17 16 15 19 19 H 1.08004 * 120.00067 * 331.88217 * 18 17 16 20 20 C 1.38816 * 119.99681 * 151.87661 * 18 17 16 21 21 N 1.31615 * 120.00410 * 335.53418 * 20 18 17 22 22 Si 1.86799 * 119.99605 * 155.53687 * 20 18 17 23 23 H 1.48501 * 109.46961 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47308 * 299.99915 * 22 20 18 25 25 H 1.48501 * 109.47368 * 59.99892 * 22 20 18 26 26 C 1.46935 * 118.86303 * 306.04411 * 17 16 15 27 27 C 1.52279 * 110.17359 * 206.72735 * 5 4 2 28 28 H 1.08990 * 109.47130 * 297.79519 * 1 2 3 29 29 H 1.09000 * 109.46933 * 57.80155 * 1 2 3 30 30 H 1.09003 * 109.46795 * 177.79382 * 1 2 3 31 31 H 1.08999 * 111.01126 * 37.28457 * 4 2 1 32 32 H 1.09002 * 111.01065 * 273.41378 * 4 2 1 33 33 H 1.08993 * 109.91072 * 140.92384 * 6 5 4 34 34 H 1.09005 * 109.90672 * 262.18417 * 6 5 4 35 35 H 1.08996 * 110.91829 * 56.03397 * 10 8 7 36 36 H 1.09005 * 110.38857 * 336.15791 * 11 10 8 37 37 H 1.09007 * 110.38522 * 98.52664 * 11 10 8 38 38 H 1.08004 * 124.44309 * 196.45573 * 12 11 10 39 39 H 1.07993 * 124.45072 * 180.02562 * 13 12 11 40 40 H 1.09005 * 110.38875 * 224.74754 * 14 13 12 41 41 H 1.09002 * 110.38633 * 102.37698 * 14 13 12 42 42 H 1.08999 * 109.48219 * 302.86192 * 15 5 4 43 43 H 1.09003 * 109.47910 * 182.82619 * 15 5 4 44 44 H 1.09004 * 109.59300 * 293.75121 * 16 15 5 45 45 H 1.08997 * 109.72465 * 173.36855 * 16 15 5 46 46 H 0.97001 * 119.99649 * 354.24960 * 21 20 18 47 47 H 1.09001 * 109.59340 * 173.72863 * 26 17 16 48 48 H 1.09002 * 109.59518 * 294.19344 * 26 17 16 49 49 H 1.09001 * 109.47444 * 57.13427 * 27 5 4 50 50 H 1.08997 * 109.48224 * 177.15690 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0692 -0.7746 1.2298 5 6 3.4668 -1.2081 0.7333 6 6 3.2522 -1.4768 -0.7646 7 7 2.0452 -0.7378 -1.1685 8 6 1.5008 -0.7359 -2.4015 9 8 0.4999 -0.0873 -2.6214 10 6 2.1359 -1.5397 -3.5067 11 6 3.5092 -0.9500 -3.9033 12 6 3.5826 -1.1220 -5.4027 13 6 2.4026 -1.3614 -5.9066 14 6 1.3456 -1.3896 -4.8272 15 6 4.4699 -0.0810 0.9387 16 6 4.6038 0.2154 2.4370 17 7 4.9197 -1.0362 3.1387 18 6 6.0170 -1.1199 3.9537 19 1 6.8787 -0.4968 3.7648 20 6 6.0215 -2.0054 5.0228 21 7 4.8846 -2.3988 5.5564 22 14 7.6415 -2.6385 5.7040 23 1 7.3752 -3.5630 6.8352 24 1 8.3789 -3.3610 4.6366 25 1 8.4584 -1.4943 6.1824 26 6 4.0416 -2.1985 2.9461 27 6 3.9081 -2.4775 1.4493 28 1 -0.3633 0.4792 0.9090 29 1 -0.3633 0.5476 -0.8696 30 1 -0.3633 -1.0269 -0.0396 31 1 1.4461 -1.6415 1.4496 32 1 2.1483 -0.1217 2.0991 33 1 4.1122 -1.1218 -1.3323 34 1 3.1079 -2.5440 -0.9333 35 1 2.2268 -2.5881 -3.2226 36 1 3.5594 0.1064 -3.6393 37 1 4.3141 -1.5021 -3.4179 38 1 4.4921 -1.0558 -5.9814 39 1 2.2075 -1.5195 -6.9569 40 1 0.6793 -2.2402 -4.9703 41 1 0.7791 -0.4584 -4.8262 42 1 4.1231 0.8132 0.4208 43 1 5.4391 -0.3798 0.5394 44 1 3.6646 0.6195 2.8150 45 1 5.4040 0.9375 2.5990 46 1 4.0482 -2.0075 5.2590 47 1 4.4727 -3.0684 3.4416 48 1 3.0577 -1.9867 3.3646 49 1 3.1678 -3.2613 1.2889 50 1 4.8714 -2.8011 1.0550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086912148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:34 Heat of formation + Delta-G solvation = -1.597017 kcal Electronic energy + Delta-G solvation = -28381.283601 eV Core-core repulsion = 24794.701812 eV Total energy + Delta-G solvation = -3586.581788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.89349 -39.31167 -37.62024 -36.11867 -33.33330 -32.14401 -30.98137 -30.00475 -29.38314 -28.38154 -27.03984 -26.04260 -24.05002 -23.20285 -22.43460 -20.98225 -20.88519 -19.10591 -18.82243 -18.22828 -17.24589 -16.96934 -16.37772 -16.35982 -14.94217 -14.67258 -14.52527 -14.20074 -13.91983 -13.66636 -13.53936 -13.35807 -13.06994 -12.97388 -12.68751 -12.61307 -12.39055 -12.20984 -12.10121 -11.88276 -11.84319 -11.68866 -11.47104 -11.32791 -11.11114 -10.93760 -10.83214 -10.68543 -10.47241 -10.22264 -10.06722 -9.91185 -9.71667 -9.53190 -9.25953 -9.14082 -8.62178 -8.39035 -6.89570 -6.08576 -3.25842 1.99764 2.57691 2.93148 3.47968 3.50628 3.68936 4.20379 4.31792 4.50555 4.57472 4.60455 4.82118 4.93996 4.94968 5.03314 5.15468 5.19736 5.31409 5.33657 5.39631 5.42278 5.50477 5.53612 5.57259 5.60389 5.64257 5.72672 5.73900 5.80001 5.89254 5.92470 5.97162 6.04934 6.14824 6.18035 6.24251 6.27786 6.32366 6.44533 6.48605 6.53382 6.57419 6.61122 6.70459 6.79016 7.03128 7.16933 7.54790 7.98722 8.15057 8.55973 9.09969 9.82564 10.27186 11.19689 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.021726 B = 0.003253 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.451727 B = 8604.139410 C = 9341.411207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.120 4.120 5 C -0.056 4.056 6 C 0.107 3.893 7 N -0.609 5.609 8 C 0.539 3.461 9 O -0.542 6.542 10 C -0.113 4.113 11 C -0.088 4.088 12 C -0.168 4.168 13 C -0.163 4.163 14 C -0.087 4.087 15 C -0.119 4.119 16 C 0.148 3.852 17 N -0.598 5.598 18 C -0.349 4.349 19 H 0.055 0.945 20 C -0.024 4.024 21 N -0.916 5.916 22 Si 1.063 2.937 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.153 3.847 27 C -0.121 4.121 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.018 0.982 45 H 0.054 0.946 46 H 0.269 0.731 47 H 0.079 0.921 48 H 0.018 0.982 49 H 0.053 0.947 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 1.341 -18.470 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.057 4.057 6 C -0.016 4.016 7 N -0.342 5.342 8 C 0.327 3.673 9 O -0.420 6.420 10 C -0.134 4.134 11 C -0.126 4.126 12 C -0.186 4.186 13 C -0.181 4.181 14 C -0.124 4.124 15 C -0.158 4.158 16 C 0.022 3.978 17 N -0.321 5.321 18 C -0.479 4.479 19 H 0.073 0.927 20 C -0.226 4.226 21 N -0.556 5.556 22 Si 0.893 3.107 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.220 1.220 26 C 0.027 3.973 27 C -0.160 4.160 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.036 0.964 49 H 0.071 0.929 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.974 0.655 -17.506 18.211 hybrid contribution -0.471 1.001 -1.185 1.621 sum -5.445 1.656 -18.691 19.539 Atomic orbital electron populations 1.22113 0.94163 1.02516 1.02949 1.21979 0.94774 0.95535 0.84540 0.90894 1.22962 0.95499 1.00461 0.96821 1.20942 0.95346 0.97544 0.91829 1.22284 0.86840 0.96050 0.96447 1.48654 1.28281 1.48248 1.09067 1.19964 0.83737 0.81584 0.81978 1.90623 1.25523 1.44190 1.81694 1.22135 0.96672 1.00430 0.94207 1.21313 0.95579 1.01535 0.94130 1.23223 0.98246 1.01305 0.95861 1.23307 0.94978 1.00637 0.99183 1.21285 0.97119 1.03743 0.90287 1.21912 0.97931 0.96225 0.99727 1.20934 0.97808 0.89583 0.89492 1.44084 1.29918 1.05427 1.52708 1.19969 0.92898 1.26986 1.08003 0.92750 1.25826 1.03914 0.99499 0.93325 1.70787 0.98878 1.45985 1.39962 0.83547 0.74686 0.76420 0.76035 1.21116 1.22074 1.22027 1.20848 0.93287 0.92109 0.91048 1.21911 1.00279 0.94335 0.99505 0.92138 0.90111 0.92882 0.90816 0.89197 0.91282 0.91509 0.87938 0.90352 0.90234 0.85564 0.85626 0.90848 0.88755 0.92983 0.91989 0.96427 0.92702 0.92026 0.90278 0.96437 0.92867 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.60 37.16 0.32 -1.79 16 2 C 0.13 1.81 3.44 -66.32 -0.23 1.58 16 3 H 0.07 1.00 7.74 -51.93 -0.40 0.60 16 4 C -0.12 -1.71 4.35 -24.86 -0.11 -1.82 16 5 C -0.06 -0.82 0.55 -154.09 -0.09 -0.91 16 6 C 0.11 1.32 5.38 -3.32 -0.02 1.30 16 7 N -0.61 -7.94 3.25 -163.21 -0.53 -8.47 16 8 C 0.54 7.20 6.89 -10.98 -0.08 7.13 16 9 O -0.54 -8.69 13.24 5.56 0.07 -8.62 16 10 C -0.11 -1.20 2.91 -90.06 -0.26 -1.46 16 11 C -0.09 -0.84 5.37 -26.83 -0.14 -0.99 16 12 C -0.17 -1.46 10.77 -35.70 -0.38 -1.84 16 13 C -0.16 -1.42 10.78 -35.70 -0.38 -1.80 16 14 C -0.09 -0.88 6.18 -26.84 -0.17 -1.04 16 15 C -0.12 -1.88 4.74 -26.94 -0.13 -2.01 16 16 C 0.15 2.91 6.19 -3.65 -0.02 2.89 16 17 N -0.60 -14.12 2.84 -172.44 -0.49 -14.61 16 18 C -0.35 -9.42 9.48 -15.06 -0.14 -9.56 16 19 H 0.05 1.48 7.94 -52.48 -0.42 1.06 16 20 C -0.02 -0.65 4.69 -17.43 -0.08 -0.73 16 21 N -0.92 -26.71 12.41 55.49 0.69 -26.03 16 22 Si 1.06 24.64 29.98 -169.99 -5.10 19.55 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.15 3.33 4.37 -3.89 -0.02 3.31 16 27 C -0.12 -2.05 4.70 -27.18 -0.13 -2.18 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.18 6.10 -51.93 -0.32 0.86 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 32 H 0.09 1.39 6.08 -51.93 -0.32 1.08 16 33 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 34 H 0.07 0.77 7.78 -51.93 -0.40 0.37 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.08 0.69 7.40 -51.93 -0.38 0.30 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.11 6.96 -51.93 -0.36 0.75 16 42 H 0.05 0.75 7.47 -51.93 -0.39 0.36 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.35 6.47 -51.93 -0.34 0.01 16 45 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 46 H 0.27 7.87 6.71 -40.82 -0.27 7.59 16 47 H 0.08 1.98 6.30 -51.93 -0.33 1.66 16 48 H 0.02 0.39 7.30 -51.93 -0.38 0.01 16 49 H 0.05 0.82 8.11 -51.93 -0.42 0.39 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -30.03 369.92 -10.31 -40.34 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.47 Total: 2.17 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.06 Total: -9.91 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.33 Total: -49.10 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.10 Total: 19.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.03 -10.31 -40.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086912148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.742 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds