Wall clock time and date at job start Tue Mar 31 2020 13:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.31967 * 2 1 4 4 C 1.55027 * 110.35400 * 122.20541 * 2 1 3 5 5 C 1.54525 * 101.52606 * 155.35163 * 4 2 1 6 6 C 1.53678 * 103.65010 * 325.16751 * 5 4 2 7 7 N 1.47178 * 107.10906 * 21.55185 * 6 5 4 8 8 C 1.34783 * 125.66455 * 181.52913 * 7 6 5 9 9 O 1.21279 * 120.00302 * 179.97438 * 8 7 6 10 10 C 1.50702 * 119.99441 * 359.97438 * 8 7 6 11 11 C 1.54636 * 111.03624 * 292.01800 * 10 8 7 12 12 C 1.51099 * 104.72666 * 217.33817 * 11 10 8 13 13 C 1.30522 * 111.10690 * 16.43996 * 12 11 10 14 14 C 1.51102 * 111.10059 * 359.97438 * 13 12 11 15 15 C 1.52276 * 110.16937 * 83.59631 * 5 4 2 16 16 C 1.53314 * 109.41913 * 62.85196 * 15 5 4 17 17 N 1.46928 * 108.71198 * 53.51759 * 16 15 5 18 18 C 1.36940 * 120.56745 * 125.76428 * 17 16 15 19 19 H 1.08004 * 120.00067 * 331.88217 * 18 17 16 20 20 C 1.38816 * 119.99681 * 151.87661 * 18 17 16 21 21 N 1.31615 * 120.00410 * 335.53418 * 20 18 17 22 22 Si 1.86799 * 119.99605 * 155.53687 * 20 18 17 23 23 H 1.48501 * 109.46961 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47308 * 299.99915 * 22 20 18 25 25 H 1.48501 * 109.47368 * 59.99892 * 22 20 18 26 26 C 1.46935 * 118.86303 * 306.04411 * 17 16 15 27 27 C 1.52279 * 110.17359 * 206.72735 * 5 4 2 28 28 H 1.08990 * 109.47130 * 297.79519 * 1 2 3 29 29 H 1.09000 * 109.46933 * 57.80155 * 1 2 3 30 30 H 1.09003 * 109.46795 * 177.79382 * 1 2 3 31 31 H 1.08999 * 111.01126 * 37.28457 * 4 2 1 32 32 H 1.09002 * 111.01065 * 273.41378 * 4 2 1 33 33 H 1.08993 * 109.91072 * 140.92384 * 6 5 4 34 34 H 1.09005 * 109.90672 * 262.18417 * 6 5 4 35 35 H 1.08996 * 110.91829 * 56.03397 * 10 8 7 36 36 H 1.09005 * 110.38857 * 336.15791 * 11 10 8 37 37 H 1.09007 * 110.38522 * 98.52664 * 11 10 8 38 38 H 1.08004 * 124.44309 * 196.45573 * 12 11 10 39 39 H 1.07993 * 124.45072 * 180.02562 * 13 12 11 40 40 H 1.09005 * 110.38875 * 224.74754 * 14 13 12 41 41 H 1.09002 * 110.38633 * 102.37698 * 14 13 12 42 42 H 1.08999 * 109.48219 * 302.86192 * 15 5 4 43 43 H 1.09003 * 109.47910 * 182.82619 * 15 5 4 44 44 H 1.09004 * 109.59300 * 293.75121 * 16 15 5 45 45 H 1.08997 * 109.72465 * 173.36855 * 16 15 5 46 46 H 0.97001 * 119.99649 * 354.24960 * 21 20 18 47 47 H 1.09001 * 109.59340 * 173.72863 * 26 17 16 48 48 H 1.09002 * 109.59518 * 294.19344 * 26 17 16 49 49 H 1.09001 * 109.47444 * 57.13427 * 27 5 4 50 50 H 1.08997 * 109.48224 * 177.15690 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0692 -0.7746 1.2298 5 6 3.4668 -1.2081 0.7333 6 6 3.2522 -1.4768 -0.7646 7 7 2.0452 -0.7378 -1.1685 8 6 1.5008 -0.7359 -2.4015 9 8 0.4999 -0.0873 -2.6214 10 6 2.1359 -1.5397 -3.5067 11 6 3.5092 -0.9500 -3.9033 12 6 3.5826 -1.1220 -5.4027 13 6 2.4026 -1.3614 -5.9066 14 6 1.3456 -1.3896 -4.8272 15 6 4.4699 -0.0810 0.9387 16 6 4.6038 0.2154 2.4370 17 7 4.9197 -1.0362 3.1387 18 6 6.0170 -1.1199 3.9537 19 1 6.8787 -0.4968 3.7648 20 6 6.0215 -2.0054 5.0228 21 7 4.8846 -2.3988 5.5564 22 14 7.6415 -2.6385 5.7040 23 1 7.3752 -3.5630 6.8352 24 1 8.3789 -3.3610 4.6366 25 1 8.4584 -1.4943 6.1824 26 6 4.0416 -2.1985 2.9461 27 6 3.9081 -2.4775 1.4493 28 1 -0.3633 0.4792 0.9090 29 1 -0.3633 0.5476 -0.8696 30 1 -0.3633 -1.0269 -0.0396 31 1 1.4461 -1.6415 1.4496 32 1 2.1483 -0.1217 2.0991 33 1 4.1122 -1.1218 -1.3323 34 1 3.1079 -2.5440 -0.9333 35 1 2.2268 -2.5881 -3.2226 36 1 3.5594 0.1064 -3.6393 37 1 4.3141 -1.5021 -3.4179 38 1 4.4921 -1.0558 -5.9814 39 1 2.2075 -1.5195 -6.9569 40 1 0.6793 -2.2402 -4.9703 41 1 0.7791 -0.4584 -4.8262 42 1 4.1231 0.8132 0.4208 43 1 5.4391 -0.3798 0.5394 44 1 3.6646 0.6195 2.8150 45 1 5.4040 0.9375 2.5990 46 1 4.0482 -2.0075 5.2590 47 1 4.4727 -3.0684 3.4416 48 1 3.0577 -1.9867 3.3646 49 1 3.1678 -3.2613 1.2889 50 1 4.8714 -2.8011 1.0550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086912148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:33 Heat of formation + Delta-G solvation = -16.713358 kcal Electronic energy + Delta-G solvation = -28381.939094 eV Core-core repulsion = 24794.701812 eV Total energy + Delta-G solvation = -3587.237282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.98308 -40.41707 -38.61316 -37.56407 -34.95929 -33.18260 -32.64349 -31.61451 -30.21199 -29.11422 -28.53476 -27.22084 -25.71981 -24.38851 -23.81114 -22.58899 -21.85660 -20.01806 -19.78396 -19.66497 -18.89127 -17.96703 -17.50607 -17.07819 -16.28753 -16.08162 -15.90053 -15.60243 -15.37722 -15.25599 -14.91684 -14.69639 -14.27062 -14.16382 -13.81089 -13.66325 -13.40587 -13.32477 -13.18083 -13.09423 -12.98451 -12.71138 -12.60735 -12.48358 -12.27965 -12.23594 -12.11729 -12.08034 -11.98486 -11.88773 -11.66568 -11.43710 -11.19184 -11.01090 -10.58027 -10.42811 -9.81189 -9.67617 -8.87291 -8.20174 -5.36423 1.35690 1.57006 1.60432 1.66986 1.85879 1.91486 2.68218 3.23632 3.29251 3.42575 3.54405 3.59799 3.65183 3.73771 3.89482 4.05523 4.11783 4.20111 4.22729 4.35822 4.39951 4.41873 4.52204 4.56988 4.57291 4.66093 4.68465 4.70957 4.75601 4.77284 4.81116 4.83202 4.91033 4.97984 5.05663 5.06498 5.11055 5.13824 5.19738 5.23006 5.24781 5.29055 5.33687 5.46293 5.56167 5.60961 5.88121 5.98499 6.43796 6.51971 7.11326 7.12358 7.82738 8.26852 9.04153 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.021726 B = 0.003253 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.451727 B = 8604.139410 C = 9341.411207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.052 4.052 6 C 0.115 3.885 7 N -0.608 5.608 8 C 0.536 3.464 9 O -0.573 6.573 10 C -0.111 4.111 11 C -0.088 4.088 12 C -0.169 4.169 13 C -0.167 4.167 14 C -0.089 4.089 15 C -0.105 4.105 16 C 0.144 3.856 17 N -0.615 5.615 18 C -0.353 4.353 19 H 0.048 0.952 20 C -0.075 4.075 21 N -0.944 5.944 22 Si 1.112 2.888 23 H -0.294 1.294 24 H -0.278 1.278 25 H -0.279 1.279 26 C 0.160 3.840 27 C -0.108 4.108 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.018 0.982 45 H 0.045 0.955 46 H 0.254 0.746 47 H 0.040 0.960 48 H 0.006 0.994 49 H 0.073 0.927 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 0.883 -20.754 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.053 4.053 6 C -0.007 4.007 7 N -0.341 5.341 8 C 0.326 3.674 9 O -0.454 6.454 10 C -0.132 4.132 11 C -0.125 4.125 12 C -0.187 4.187 13 C -0.185 4.185 14 C -0.127 4.127 15 C -0.144 4.144 16 C 0.019 3.981 17 N -0.340 5.340 18 C -0.483 4.483 19 H 0.066 0.934 20 C -0.271 4.271 21 N -0.586 5.586 22 Si 0.937 3.063 23 H -0.220 1.220 24 H -0.205 1.205 25 H -0.205 1.205 26 C 0.035 3.965 27 C -0.147 4.147 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.023 0.977 49 H 0.092 0.908 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.027 0.216 -19.825 20.231 hybrid contribution -0.821 1.224 -0.449 1.541 sum -4.848 1.440 -20.274 20.895 Atomic orbital electron populations 1.22019 0.94015 1.02097 1.02824 1.21914 0.94874 0.95452 0.84416 0.90926 1.22848 0.95398 1.00251 0.96647 1.20834 0.94982 0.95900 0.93591 1.22207 0.87135 0.97087 0.94311 1.48674 1.28386 1.48128 1.08927 1.20472 0.83309 0.81291 0.82340 1.90618 1.26988 1.45583 1.82163 1.22183 0.97160 1.00684 0.93210 1.21329 0.95171 1.00958 0.95050 1.23395 0.98995 1.00896 0.95405 1.23425 0.94449 1.00886 0.99719 1.21277 0.97592 1.02954 0.90829 1.21744 0.98463 0.97599 0.96567 1.21065 0.97305 0.87949 0.91798 1.44316 1.29573 1.07361 1.52763 1.20210 0.93676 1.26373 1.08033 0.93403 1.27093 1.05884 1.00169 0.93977 1.70901 0.98972 1.47281 1.41438 0.82893 0.71667 0.76240 0.75534 1.22023 1.20455 1.20471 1.20685 0.91759 0.90053 0.94026 1.21726 1.01034 0.96124 0.95830 0.91075 0.91502 0.93286 0.90842 0.90690 0.89568 0.89808 0.86396 0.91464 0.88843 0.83710 0.83854 0.90159 0.90947 0.90872 0.91975 0.96436 0.93661 0.93554 0.94102 0.97653 0.90823 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.60 71.98 0.62 -3.25 16 2 C 0.14 3.46 3.44 45.50 0.16 3.61 16 3 H 0.07 1.87 7.74 -2.39 -0.02 1.85 16 4 C -0.11 -3.10 4.35 31.81 0.14 -2.96 16 5 C -0.05 -1.43 0.55 -51.91 -0.03 -1.45 16 6 C 0.11 2.46 5.38 86.48 0.47 2.92 16 7 N -0.61 -14.45 3.25 -788.65 -2.56 -17.01 16 8 C 0.54 13.37 6.89 87.66 0.60 13.98 16 9 O -0.57 -17.99 13.24 -3.03 -0.04 -18.03 16 10 C -0.11 -2.08 2.91 -10.43 -0.03 -2.11 16 11 C -0.09 -1.41 5.37 30.53 0.16 -1.25 16 12 C -0.17 -2.41 10.77 26.27 0.28 -2.13 16 13 C -0.17 -2.47 10.78 26.27 0.28 -2.19 16 14 C -0.09 -1.64 6.18 30.53 0.19 -1.45 16 15 C -0.10 -3.12 4.74 30.46 0.14 -2.98 16 16 C 0.14 5.62 6.19 86.40 0.53 6.16 16 17 N -0.62 -29.37 2.84 -699.49 -1.99 -31.36 16 18 C -0.35 -19.25 9.48 84.03 0.80 -18.46 16 19 H 0.05 2.63 7.94 -2.91 -0.02 2.60 16 20 C -0.07 -4.18 4.69 84.86 0.40 -3.78 16 21 N -0.94 -56.58 12.41 21.65 0.27 -56.31 16 22 Si 1.11 50.02 29.98 68.60 2.06 52.08 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.16 7.08 4.37 86.24 0.38 7.45 16 27 C -0.11 -3.50 4.70 30.30 0.14 -3.35 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 1.92 6.10 -2.39 -0.01 1.91 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 2.02 7.92 -2.39 -0.02 2.00 16 32 H 0.07 2.29 6.08 -2.39 -0.01 2.28 16 33 H 0.09 1.62 6.44 -2.39 -0.02 1.60 16 34 H 0.08 1.59 7.78 -2.38 -0.02 1.57 16 35 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.25 7.88 -2.38 -0.02 1.23 16 37 H 0.09 1.24 7.40 -2.38 -0.02 1.23 16 38 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.07 1.67 6.96 -2.39 -0.02 1.65 16 42 H 0.07 1.90 7.47 -2.39 -0.02 1.88 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.02 0.69 6.47 -2.39 -0.02 0.68 16 45 H 0.04 1.82 7.93 -2.39 -0.02 1.80 16 46 H 0.25 15.50 6.71 -92.71 -0.62 14.88 16 47 H 0.04 2.10 6.30 -2.39 -0.02 2.09 16 48 H 0.01 0.25 7.30 -2.39 -0.02 0.23 16 49 H 0.07 2.10 8.11 -2.39 -0.02 2.08 16 50 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.40 369.92 4.03 -62.37 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 1.05 Total: 19.49 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 5.24 Total: -11.22 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -4.28 Total: -104.68 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.04 Total: -18.03 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.06 Total: 52.08 kcal Total: -66.40 4.03 -62.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086912148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.656 kcal (2) G-P(sol) polarization free energy of solvation -66.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds