Wall clock time and date at job start Tue Mar 31 2020 13:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 110.31353 * 2 1 4 4 C 1.55018 * 110.35440 * 122.20887 * 2 1 3 5 5 C 1.54532 * 101.52116 * 155.35082 * 4 2 1 6 6 C 1.53680 * 103.65245 * 325.16397 * 5 4 2 7 7 N 1.47185 * 107.10493 * 21.55599 * 6 5 4 8 8 C 1.34778 * 125.65897 * 181.53205 * 7 6 5 9 9 O 1.21613 * 119.99643 * 179.97438 * 8 7 6 10 10 C 1.47103 * 120.00122 * 359.96410 * 8 7 6 11 11 C 1.32993 * 119.99869 * 180.02562 * 10 8 7 12 12 C 1.51406 * 136.31777 * 359.62886 * 11 10 8 13 13 C 1.53376 * 87.51631 * 206.05758 * 12 11 10 14 14 C 1.51407 * 136.31213 * 180.02562 * 11 10 8 15 15 C 1.52280 * 110.17092 * 83.59904 * 5 4 2 16 16 C 1.53318 * 109.42024 * 62.84520 * 15 5 4 17 17 N 1.46927 * 108.70557 * 53.52533 * 16 15 5 18 18 C 1.36943 * 120.56861 * 125.76748 * 17 16 15 19 19 H 1.07997 * 119.99493 * 332.20744 * 18 17 16 20 20 C 1.38810 * 120.00142 * 152.20431 * 18 17 16 21 21 N 1.31618 * 120.00081 * 342.68881 * 20 18 17 22 22 Si 1.86801 * 119.99991 * 162.68530 * 20 18 17 23 23 H 1.48495 * 109.46897 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47134 * 300.00166 * 22 20 18 25 25 H 1.48493 * 109.47141 * 59.99993 * 22 20 18 26 26 C 1.46930 * 118.86475 * 306.03500 * 17 16 15 27 27 C 1.52278 * 110.17135 * 206.72614 * 5 4 2 28 28 H 1.08991 * 109.46859 * 297.79027 * 1 2 3 29 29 H 1.09003 * 109.46971 * 57.79603 * 1 2 3 30 30 H 1.09000 * 109.46530 * 177.79356 * 1 2 3 31 31 H 1.08995 * 111.01528 * 37.29096 * 4 2 1 32 32 H 1.08999 * 111.01107 * 273.40645 * 4 2 1 33 33 H 1.09003 * 109.90982 * 140.91868 * 6 5 4 34 34 H 1.09001 * 109.91150 * 262.18639 * 6 5 4 35 35 H 1.08000 * 119.99638 * 0.02562 * 10 8 7 36 36 H 1.09001 * 113.55806 * 320.64356 * 12 11 10 37 37 H 1.08996 * 113.55803 * 91.37322 * 12 11 10 38 38 H 1.09000 * 113.96712 * 220.28712 * 13 12 11 39 39 H 1.09002 * 113.59483 * 88.80028 * 13 12 11 40 40 H 1.09001 * 113.56060 * 268.61917 * 14 11 10 41 41 H 1.08992 * 113.56368 * 39.29022 * 14 11 10 42 42 H 1.09002 * 109.47523 * 302.85960 * 15 5 4 43 43 H 1.08998 * 109.47948 * 182.82870 * 15 5 4 44 44 H 1.09000 * 109.59682 * 293.75631 * 16 15 5 45 45 H 1.08999 * 109.72484 * 173.37138 * 16 15 5 46 46 H 0.96998 * 120.00393 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.60078 * 173.73742 * 26 17 16 48 48 H 1.09000 * 109.59814 * 294.20581 * 26 17 16 49 49 H 1.09001 * 109.47562 * 57.13512 * 27 5 4 50 50 H 1.09003 * 109.48327 * 177.16795 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0693 -0.7747 1.2297 5 6 3.4669 -1.2081 0.7330 6 6 3.2523 -1.4767 -0.7649 7 7 2.0452 -0.7376 -1.1686 8 6 1.5007 -0.7358 -2.4015 9 8 0.4970 -0.0854 -2.6219 10 6 2.1206 -1.5202 -3.4806 11 6 1.5835 -1.5179 -4.6972 12 6 0.3850 -0.8765 -5.3639 13 6 0.3967 -2.0444 -6.3579 14 6 1.8938 -2.1615 -6.0322 15 6 4.4701 -0.0810 0.9385 16 6 4.6040 0.2154 2.4368 17 7 4.9200 -1.0364 3.1383 18 6 6.0173 -1.1200 3.9533 19 1 6.8769 -0.4931 3.7676 20 6 6.0248 -2.0105 5.0181 21 7 4.8936 -2.5195 5.4583 22 14 7.6402 -2.4865 5.8263 23 1 7.3779 -3.4442 6.9305 24 1 8.5284 -3.1226 4.8205 25 1 8.2985 -1.2716 6.3701 26 6 4.0420 -2.1986 2.9457 27 6 3.9083 -2.4775 1.4489 28 1 -0.3633 0.4791 0.9091 29 1 -0.3633 0.5477 -0.8696 30 1 -0.3632 -1.0269 -0.0396 31 1 1.4463 -1.6416 1.4495 32 1 2.1485 -0.1218 2.0989 33 1 4.1123 -1.1215 -1.3327 34 1 3.1079 -2.5439 -0.9337 35 1 3.0118 -2.0980 -3.2847 36 1 -0.5035 -0.8523 -4.7328 37 1 0.6054 0.0877 -5.8218 38 1 0.1915 -1.7515 -7.3876 39 1 -0.1930 -2.9011 -6.0316 40 1 2.5283 -1.5499 -6.6737 41 1 2.2435 -3.1904 -5.9491 42 1 4.1232 0.8132 0.4206 43 1 5.4392 -0.3797 0.5390 44 1 3.6649 0.6194 2.8149 45 1 5.4042 0.9375 2.5989 46 1 4.8988 -3.1420 6.2021 47 1 4.4730 -3.0686 3.4411 48 1 3.0581 -1.9868 3.3643 49 1 3.1680 -3.2613 1.2885 50 1 4.8717 -2.8010 1.0547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086915529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:47 Heat of formation + Delta-G solvation = 26.191192 kcal Electronic energy + Delta-G solvation = -27757.728544 eV Core-core repulsion = 24172.351743 eV Total energy + Delta-G solvation = -3585.376801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.55249 -39.20110 -38.02068 -35.87727 -33.07675 -32.27578 -30.94534 -30.27922 -29.91704 -27.11429 -26.02595 -25.91547 -24.18975 -23.69115 -22.42917 -21.60409 -20.93794 -19.43214 -18.11128 -17.78480 -17.00024 -16.44933 -16.10639 -15.75351 -15.30951 -14.85862 -14.50355 -14.15249 -13.99066 -13.73868 -13.50766 -13.44269 -13.04179 -12.72487 -12.71513 -12.54570 -12.23515 -12.15964 -11.92367 -11.87458 -11.66249 -11.43357 -11.24345 -11.18401 -10.92982 -10.75539 -10.70184 -10.59147 -10.45626 -10.26050 -10.08029 -9.84635 -9.57771 -9.45622 -9.35643 -9.29958 -8.49050 -8.42347 -6.66519 -5.79625 -3.21519 1.26577 3.06236 3.34571 3.37539 3.43594 3.44640 4.10402 4.25053 4.49036 4.49088 4.72493 4.77618 4.84460 5.07027 5.09243 5.27622 5.27873 5.35731 5.37162 5.39778 5.44816 5.50891 5.54411 5.62520 5.71183 5.73580 5.75328 5.85226 5.93133 5.94596 6.00990 6.08426 6.10807 6.18950 6.27821 6.33917 6.37864 6.48125 6.51578 6.59716 6.65358 6.68594 6.75315 6.84928 6.97522 7.35705 7.65439 7.69266 7.78887 8.31489 8.44796 9.21140 9.84723 10.41176 11.28768 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.026230 B = 0.002798 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.219032 B =10004.562423 C =10515.548035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.056 4.056 6 C 0.107 3.893 7 N -0.608 5.608 8 C 0.565 3.435 9 O -0.547 6.547 10 C -0.192 4.192 11 C -0.068 4.068 12 C -0.104 4.104 13 C -0.143 4.143 14 C -0.108 4.108 15 C -0.119 4.119 16 C 0.146 3.854 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.291 1.291 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.173 3.827 27 C -0.126 4.126 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.053 0.947 46 H 0.254 0.746 47 H 0.087 0.913 48 H 0.019 0.981 49 H 0.050 0.950 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 0.870 -19.594 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.057 4.057 6 C -0.015 4.015 7 N -0.341 5.341 8 C 0.357 3.643 9 O -0.427 6.427 10 C -0.212 4.212 11 C -0.070 4.070 12 C -0.141 4.141 13 C -0.180 4.180 14 C -0.145 4.145 15 C -0.158 4.158 16 C 0.020 3.980 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.217 1.217 24 H -0.211 1.211 25 H -0.209 1.209 26 C 0.047 3.953 27 C -0.165 4.165 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.566 1.105 -19.608 21.046 hybrid contribution 1.050 -0.470 0.554 1.277 sum -6.516 0.635 -19.054 20.147 Atomic orbital electron populations 1.22111 0.94270 1.02448 1.02845 1.21971 0.94697 0.95509 0.84561 0.90948 1.22950 0.95503 1.00439 0.96705 1.20956 0.95344 0.97725 0.91637 1.22259 0.86677 0.96014 0.96590 1.48550 1.28281 1.48249 1.09043 1.18007 0.83558 0.81466 0.81310 1.90696 1.25485 1.44418 1.82091 1.21671 1.02151 1.04842 0.92565 1.23423 0.95523 0.94503 0.93541 1.22194 0.97410 0.97802 0.96683 1.22725 0.96056 0.99377 0.99843 1.22338 0.97580 1.01146 0.93461 1.21923 0.97878 0.96211 0.99802 1.20944 0.97904 0.89744 0.89458 1.44015 1.29428 1.05831 1.52055 1.19137 0.92328 1.21553 1.05190 0.91825 1.25020 0.96549 1.01756 0.96273 1.70018 1.24034 1.33743 1.26889 0.86391 0.83619 0.78212 0.78675 1.21675 1.21085 1.20919 1.20684 0.93439 0.92208 0.88967 1.22037 0.99885 0.94107 1.00518 0.92208 0.90146 0.92958 0.90861 0.89081 0.91593 0.91554 0.85157 0.89568 0.88600 0.90492 0.89789 0.88230 0.90441 0.93106 0.92107 0.96249 0.92864 0.93605 0.89491 0.96269 0.93091 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.60 37.16 0.32 -1.88 16 2 C 0.14 1.93 3.44 -66.32 -0.23 1.70 16 3 H 0.07 1.04 7.74 -51.93 -0.40 0.64 16 4 C -0.12 -1.78 4.35 -24.86 -0.11 -1.89 16 5 C -0.06 -0.86 0.55 -154.09 -0.09 -0.95 16 6 C 0.11 1.43 5.24 -3.31 -0.02 1.42 16 7 N -0.61 -8.61 3.25 -164.58 -0.53 -9.14 16 8 C 0.57 8.25 7.58 -12.66 -0.10 8.16 16 9 O -0.55 -9.13 12.88 5.27 0.07 -9.07 16 10 C -0.19 -2.28 9.54 -37.81 -0.36 -2.64 16 11 C -0.07 -0.72 6.93 -100.48 -0.70 -1.41 16 12 C -0.10 -1.02 6.99 -27.56 -0.19 -1.21 16 13 C -0.14 -1.04 8.17 -26.20 -0.21 -1.25 16 14 C -0.11 -0.81 7.95 -27.41 -0.22 -1.03 16 15 C -0.12 -1.94 4.74 -26.93 -0.13 -2.07 16 16 C 0.15 2.90 6.19 -3.64 -0.02 2.88 16 17 N -0.59 -14.13 2.99 -172.45 -0.52 -14.64 16 18 C -0.25 -6.74 9.57 -15.06 -0.14 -6.88 16 19 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 20 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 21 N -0.90 -25.64 11.20 55.49 0.62 -25.02 16 22 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.17 3.89 5.01 -3.89 -0.02 3.87 16 27 C -0.13 -2.22 4.70 -27.18 -0.13 -2.35 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.22 6.09 -51.93 -0.32 0.90 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.12 7.92 -51.93 -0.41 0.71 16 32 H 0.09 1.48 6.08 -51.93 -0.32 1.16 16 33 H 0.07 0.82 7.83 -51.93 -0.41 0.42 16 34 H 0.07 0.83 7.78 -51.93 -0.40 0.43 16 35 H 0.13 1.33 7.38 -52.49 -0.39 0.94 16 36 H 0.09 1.00 7.49 -51.93 -0.39 0.61 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.75 7.47 -51.93 -0.39 0.37 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.39 6.47 -51.93 -0.34 0.06 16 45 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.09 2.24 6.02 -51.93 -0.31 1.93 16 48 H 0.02 0.45 7.56 -51.93 -0.39 0.06 16 49 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -29.72 377.03 -10.78 -40.50 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.65 Total: 0.94 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.42 Total: -5.56 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.43 Total: -48.80 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.72 -10.78 -40.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086915529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.690 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds