Wall clock time and date at job start Tue Mar 31 2020 13:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.31602 * 2 1 4 4 C 1.55030 * 110.35409 * 122.19911 * 2 1 3 5 5 C 1.54525 * 101.52600 * 155.35461 * 4 2 1 6 6 C 1.53687 * 103.64649 * 325.16472 * 5 4 2 7 7 N 1.47178 * 107.10897 * 21.55740 * 6 5 4 8 8 C 1.34777 * 125.66286 * 181.52874 * 7 6 5 9 9 O 1.21614 * 119.99776 * 185.00752 * 8 7 6 10 10 C 1.47102 * 119.99977 * 4.99922 * 8 7 6 11 11 C 1.32617 * 124.62098 * 186.44253 * 10 8 7 12 12 C 1.51109 * 110.75404 * 180.02562 * 11 10 8 13 13 C 1.54571 * 104.84576 * 16.59314 * 12 11 10 14 14 C 1.51112 * 124.61852 * 6.13593 * 10 8 7 15 15 C 1.52265 * 110.17294 * 83.59754 * 5 4 2 16 16 C 1.53318 * 109.42161 * 62.84666 * 15 5 4 17 17 N 1.46940 * 108.70367 * 53.52630 * 16 15 5 18 18 C 1.36930 * 120.57079 * 125.76882 * 17 16 15 19 19 H 1.07999 * 120.00026 * 331.39968 * 18 17 16 20 20 C 1.38811 * 120.00085 * 151.39597 * 18 17 16 21 21 N 1.31622 * 120.00091 * 345.23033 * 20 18 17 22 22 Si 1.86799 * 119.99891 * 165.22927 * 20 18 17 23 23 H 1.48497 * 109.47421 * 269.99975 * 22 20 18 24 24 H 1.48498 * 109.47219 * 30.00020 * 22 20 18 25 25 H 1.48507 * 109.47287 * 150.00064 * 22 20 18 26 26 C 1.46936 * 118.85770 * 306.03677 * 17 16 15 27 27 C 1.52277 * 110.16969 * 206.73117 * 5 4 2 28 28 H 1.09004 * 109.47380 * 297.80162 * 1 2 3 29 29 H 1.08998 * 109.47082 * 57.79915 * 1 2 3 30 30 H 1.09004 * 109.47448 * 177.79947 * 1 2 3 31 31 H 1.08998 * 111.01328 * 37.29024 * 4 2 1 32 32 H 1.09003 * 111.01196 * 273.41863 * 4 2 1 33 33 H 1.09003 * 109.90612 * 140.91979 * 6 5 4 34 34 H 1.08996 * 109.91204 * 262.18070 * 6 5 4 35 35 H 1.07998 * 124.61982 * 359.97123 * 11 10 8 36 36 H 1.09007 * 110.36437 * 135.43708 * 12 11 10 37 37 H 1.09000 * 110.36478 * 257.75020 * 12 11 10 38 38 H 1.09005 * 110.98366 * 93.07459 * 13 12 11 39 39 H 1.08995 * 110.98901 * 216.87220 * 13 12 11 40 40 H 1.08994 * 110.36873 * 282.24237 * 14 10 8 41 41 H 1.09001 * 110.36613 * 44.56573 * 14 10 8 42 42 H 1.08999 * 109.48031 * 302.86382 * 15 5 4 43 43 H 1.09001 * 109.48256 * 182.83188 * 15 5 4 44 44 H 1.08995 * 109.59871 * 293.76380 * 16 15 5 45 45 H 1.08993 * 109.72990 * 173.36498 * 16 15 5 46 46 H 0.97000 * 119.99926 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.59279 * 173.73800 * 26 17 16 48 48 H 1.09006 * 109.59960 * 294.19906 * 26 17 16 49 49 H 1.09001 * 109.48156 * 57.13380 * 27 5 4 50 50 H 1.09006 * 109.47687 * 177.16618 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0692 -0.7745 1.2300 5 6 3.4668 -1.2080 0.7334 6 6 3.2522 -1.4769 -0.7644 7 7 2.0452 -0.7378 -1.1684 8 6 1.5008 -0.7361 -2.4013 9 8 0.5522 -0.0155 -2.6461 10 6 2.0540 -1.6057 -3.4509 11 6 1.6727 -1.5899 -4.7210 12 6 2.4446 -2.6106 -5.5245 13 6 3.0664 -3.5558 -4.4713 14 6 3.1390 -2.6341 -3.2301 15 6 4.4699 -0.0810 0.9388 16 6 4.6037 0.2157 2.4370 17 7 4.9197 -1.0360 3.1388 18 6 6.0169 -1.1195 3.9539 19 1 6.8816 -0.5021 3.7604 20 6 6.0177 -1.9978 5.0288 21 7 4.8882 -2.5311 5.4438 22 14 7.6218 -2.4228 5.8864 23 1 8.2317 -3.6101 5.2355 24 1 8.5549 -1.2716 5.7899 25 1 7.3543 -2.7247 7.3156 26 6 4.0416 -2.1982 2.9463 27 6 3.9080 -2.4774 1.4496 28 1 -0.3634 0.4793 0.9091 29 1 -0.3633 0.5476 -0.8696 30 1 -0.3634 -1.0269 -0.0395 31 1 1.4462 -1.6415 1.4498 32 1 2.1482 -0.1215 2.0991 33 1 4.1122 -1.1217 -1.3322 34 1 3.1079 -2.5440 -0.9331 35 1 0.9133 -0.9373 -5.1255 36 1 1.7726 -3.1637 -6.1809 37 1 3.2273 -2.1229 -6.1055 38 1 2.4207 -4.4147 -4.2880 39 1 4.0630 -3.8765 -4.7745 40 1 4.1137 -2.1501 -3.1694 41 1 2.9412 -3.2055 -2.3233 42 1 4.1230 0.8132 0.4208 43 1 5.4391 -0.3797 0.5394 44 1 3.6646 0.6197 2.8151 45 1 5.4039 0.9377 2.5991 46 1 4.8888 -3.1451 6.1948 47 1 4.4726 -3.0681 3.4419 48 1 3.0576 -1.9864 3.3649 49 1 3.1678 -3.2612 1.2892 50 1 4.8715 -2.8008 1.0554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086916217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:41 Heat of formation + Delta-G solvation = 3.731764 kcal Electronic energy + Delta-G solvation = -28359.973228 eV Core-core repulsion = 24773.622513 eV Total energy + Delta-G solvation = -3586.350715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.74929 -39.00126 -37.68540 -35.94404 -33.10821 -32.04797 -30.93233 -29.93570 -29.41279 -28.44715 -27.13481 -25.97170 -24.16524 -22.97607 -22.20161 -21.42090 -20.76045 -19.99641 -18.29966 -18.04543 -16.71464 -16.58227 -16.28619 -15.92312 -15.05078 -14.87914 -14.33197 -14.02521 -13.92308 -13.81115 -13.49767 -13.11260 -12.99215 -12.89005 -12.71099 -12.56591 -12.18720 -12.07915 -11.93692 -11.86106 -11.69187 -11.47778 -11.45341 -11.30468 -11.11881 -10.92247 -10.75199 -10.62844 -10.39248 -10.25247 -10.08084 -9.85673 -9.63337 -9.49656 -9.38641 -9.16577 -8.49644 -8.41527 -6.66031 -5.79824 -3.23959 1.29068 3.06624 3.26786 3.36141 3.43372 3.44255 4.24040 4.34653 4.47887 4.67210 4.73673 4.75014 4.95568 5.05740 5.09396 5.22349 5.32897 5.37299 5.39318 5.44104 5.48509 5.52005 5.57013 5.64990 5.70707 5.72635 5.77990 5.82831 5.90563 5.94282 6.01946 6.09542 6.12003 6.18288 6.28392 6.32279 6.36221 6.41232 6.50394 6.57403 6.64003 6.66315 6.74563 6.83948 6.96639 7.35978 7.64358 7.66815 7.78113 8.24467 8.44871 9.20913 9.83666 10.40303 11.28189 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.003383 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.184094 B = 8275.906333 C = 9118.139651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.057 4.057 6 C 0.101 3.899 7 N -0.605 5.605 8 C 0.579 3.421 9 O -0.547 6.547 10 C -0.183 4.183 11 C -0.084 4.084 12 C -0.105 4.105 13 C -0.125 4.125 14 C -0.098 4.098 15 C -0.119 4.119 16 C 0.146 3.854 17 N -0.591 5.591 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.291 1.291 26 C 0.173 3.827 27 C -0.126 4.126 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.053 0.947 46 H 0.253 0.747 47 H 0.089 0.911 48 H 0.019 0.981 49 H 0.050 0.950 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 -0.667 -17.974 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.058 4.058 6 C -0.021 4.021 7 N -0.337 5.337 8 C 0.369 3.631 9 O -0.427 6.427 10 C -0.186 4.186 11 C -0.104 4.104 12 C -0.142 4.142 13 C -0.162 4.162 14 C -0.134 4.134 15 C -0.158 4.158 16 C 0.019 3.981 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.205 1.205 25 H -0.218 1.218 26 C 0.047 3.953 27 C -0.165 4.165 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.153 0.847 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.630 -0.388 -17.991 18.855 hybrid contribution 0.864 -0.268 0.501 1.034 sum -4.766 -0.656 -17.490 18.139 Atomic orbital electron populations 1.22099 0.94315 1.02458 1.02962 1.21986 0.94659 0.95639 0.84524 0.90856 1.22954 0.95541 1.00443 0.96643 1.20989 0.95300 0.97747 0.91762 1.22631 0.86615 0.96482 0.96412 1.48530 1.28155 1.48074 1.08985 1.17612 0.82564 0.81921 0.80963 1.90722 1.28726 1.42405 1.80887 1.21853 1.01139 1.00825 0.94812 1.23982 0.96193 0.96337 0.93839 1.21460 0.98999 0.95711 0.98065 1.22495 1.01367 0.97701 0.94680 1.21665 0.97240 0.95209 0.99331 1.21923 0.97882 0.96222 0.99819 1.20947 0.97901 0.89769 0.89443 1.44017 1.29389 1.05832 1.52122 1.19199 0.92171 1.22219 1.04520 0.91783 1.25059 0.96589 1.01590 0.96355 1.70003 1.23956 1.33681 1.27176 0.86288 0.83339 0.78460 0.78652 1.21484 1.20479 1.21781 1.20705 0.93433 0.92309 0.88877 1.22041 0.99848 0.94051 1.00605 0.91960 0.90285 0.92892 0.90823 0.89036 0.91515 0.90668 0.84658 0.90414 0.89824 0.90840 0.90541 0.90048 0.89883 0.93144 0.92125 0.96243 0.92876 0.93656 0.89297 0.96301 0.93120 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.67 37.15 0.32 -1.90 16 2 C 0.13 1.92 3.42 -66.32 -0.23 1.69 16 3 H 0.07 1.06 7.74 -51.93 -0.40 0.66 16 4 C -0.12 -1.76 4.35 -24.86 -0.11 -1.87 16 5 C -0.06 -0.87 0.55 -154.09 -0.09 -0.96 16 6 C 0.10 1.33 4.52 -3.31 -0.01 1.31 16 7 N -0.60 -8.56 3.25 -164.58 -0.53 -9.10 16 8 C 0.58 8.61 7.54 -12.66 -0.10 8.52 16 9 O -0.55 -9.56 14.66 5.27 0.08 -9.48 16 10 C -0.18 -2.19 6.03 -102.73 -0.62 -2.81 16 11 C -0.08 -0.86 10.44 -36.01 -0.38 -1.24 16 12 C -0.11 -0.79 6.79 -26.86 -0.18 -0.97 16 13 C -0.12 -0.95 7.17 -24.97 -0.18 -1.13 16 14 C -0.10 -0.94 4.76 -26.75 -0.13 -1.07 16 15 C -0.12 -1.94 4.74 -26.94 -0.13 -2.06 16 16 C 0.15 2.89 6.19 -3.64 -0.02 2.86 16 17 N -0.59 -14.05 2.99 -172.44 -0.52 -14.56 16 18 C -0.25 -6.68 9.58 -15.06 -0.14 -6.82 16 19 H 0.06 1.68 7.87 -52.49 -0.41 1.27 16 20 C 0.00 0.07 4.97 -17.43 -0.09 -0.02 16 21 N -0.90 -25.50 11.09 55.49 0.62 -24.88 16 22 Si 0.90 21.24 29.58 -169.99 -5.03 16.22 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.17 3.85 4.99 -3.89 -0.02 3.83 16 27 C -0.13 -2.19 4.70 -27.18 -0.13 -2.32 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.21 6.13 -51.93 -0.32 0.89 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 32 H 0.09 1.48 6.08 -51.93 -0.32 1.16 16 33 H 0.07 0.84 6.99 -51.93 -0.36 0.47 16 34 H 0.08 0.92 5.11 -51.93 -0.27 0.66 16 35 H 0.14 1.39 8.04 -52.49 -0.42 0.96 16 36 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.76 7.36 -51.93 -0.38 0.38 16 41 H 0.08 0.83 5.64 -51.93 -0.29 0.53 16 42 H 0.05 0.75 7.47 -51.93 -0.39 0.36 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.39 6.47 -51.93 -0.34 0.06 16 45 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.09 2.28 6.00 -51.93 -0.31 1.96 16 48 H 0.02 0.44 7.56 -51.93 -0.39 0.05 16 49 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -29.81 368.16 -10.42 -40.23 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.36 Total: 0.98 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.22 Total: -4.96 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.43 Total: -48.54 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.81 -10.42 -40.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086916217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.958 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds