Wall clock time and date at job start Tue Mar 31 2020 13:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.31602 * 2 1 4 4 C 1.55030 * 110.35409 * 122.19911 * 2 1 3 5 5 C 1.54525 * 101.52600 * 155.35461 * 4 2 1 6 6 C 1.53687 * 103.64649 * 325.16472 * 5 4 2 7 7 N 1.47178 * 107.10897 * 21.55740 * 6 5 4 8 8 C 1.34777 * 125.66286 * 181.52874 * 7 6 5 9 9 O 1.21614 * 119.99776 * 185.00752 * 8 7 6 10 10 C 1.47102 * 119.99977 * 4.99922 * 8 7 6 11 11 C 1.32617 * 124.62098 * 186.44253 * 10 8 7 12 12 C 1.51109 * 110.75404 * 180.02562 * 11 10 8 13 13 C 1.54571 * 104.84576 * 16.59314 * 12 11 10 14 14 C 1.51112 * 124.61852 * 6.13593 * 10 8 7 15 15 C 1.52265 * 110.17294 * 83.59754 * 5 4 2 16 16 C 1.53318 * 109.42161 * 62.84666 * 15 5 4 17 17 N 1.46940 * 108.70367 * 53.52630 * 16 15 5 18 18 C 1.36930 * 120.57079 * 125.76882 * 17 16 15 19 19 H 1.07999 * 120.00026 * 331.39968 * 18 17 16 20 20 C 1.38811 * 120.00085 * 151.39597 * 18 17 16 21 21 N 1.31622 * 120.00091 * 345.23033 * 20 18 17 22 22 Si 1.86799 * 119.99891 * 165.22927 * 20 18 17 23 23 H 1.48497 * 109.47421 * 269.99975 * 22 20 18 24 24 H 1.48498 * 109.47219 * 30.00020 * 22 20 18 25 25 H 1.48507 * 109.47287 * 150.00064 * 22 20 18 26 26 C 1.46936 * 118.85770 * 306.03677 * 17 16 15 27 27 C 1.52277 * 110.16969 * 206.73117 * 5 4 2 28 28 H 1.09004 * 109.47380 * 297.80162 * 1 2 3 29 29 H 1.08998 * 109.47082 * 57.79915 * 1 2 3 30 30 H 1.09004 * 109.47448 * 177.79947 * 1 2 3 31 31 H 1.08998 * 111.01328 * 37.29024 * 4 2 1 32 32 H 1.09003 * 111.01196 * 273.41863 * 4 2 1 33 33 H 1.09003 * 109.90612 * 140.91979 * 6 5 4 34 34 H 1.08996 * 109.91204 * 262.18070 * 6 5 4 35 35 H 1.07998 * 124.61982 * 359.97123 * 11 10 8 36 36 H 1.09007 * 110.36437 * 135.43708 * 12 11 10 37 37 H 1.09000 * 110.36478 * 257.75020 * 12 11 10 38 38 H 1.09005 * 110.98366 * 93.07459 * 13 12 11 39 39 H 1.08995 * 110.98901 * 216.87220 * 13 12 11 40 40 H 1.08994 * 110.36873 * 282.24237 * 14 10 8 41 41 H 1.09001 * 110.36613 * 44.56573 * 14 10 8 42 42 H 1.08999 * 109.48031 * 302.86382 * 15 5 4 43 43 H 1.09001 * 109.48256 * 182.83188 * 15 5 4 44 44 H 1.08995 * 109.59871 * 293.76380 * 16 15 5 45 45 H 1.08993 * 109.72990 * 173.36498 * 16 15 5 46 46 H 0.97000 * 119.99926 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.59279 * 173.73800 * 26 17 16 48 48 H 1.09006 * 109.59960 * 294.19906 * 26 17 16 49 49 H 1.09001 * 109.48156 * 57.13380 * 27 5 4 50 50 H 1.09006 * 109.47687 * 177.16618 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0692 -0.7745 1.2300 5 6 3.4668 -1.2080 0.7334 6 6 3.2522 -1.4769 -0.7644 7 7 2.0452 -0.7378 -1.1684 8 6 1.5008 -0.7361 -2.4013 9 8 0.5522 -0.0155 -2.6461 10 6 2.0540 -1.6057 -3.4509 11 6 1.6727 -1.5899 -4.7210 12 6 2.4446 -2.6106 -5.5245 13 6 3.0664 -3.5558 -4.4713 14 6 3.1390 -2.6341 -3.2301 15 6 4.4699 -0.0810 0.9388 16 6 4.6037 0.2157 2.4370 17 7 4.9197 -1.0360 3.1388 18 6 6.0169 -1.1195 3.9539 19 1 6.8816 -0.5021 3.7604 20 6 6.0177 -1.9978 5.0288 21 7 4.8882 -2.5311 5.4438 22 14 7.6218 -2.4228 5.8864 23 1 8.2317 -3.6101 5.2355 24 1 8.5549 -1.2716 5.7899 25 1 7.3543 -2.7247 7.3156 26 6 4.0416 -2.1982 2.9463 27 6 3.9080 -2.4774 1.4496 28 1 -0.3634 0.4793 0.9091 29 1 -0.3633 0.5476 -0.8696 30 1 -0.3634 -1.0269 -0.0395 31 1 1.4462 -1.6415 1.4498 32 1 2.1482 -0.1215 2.0991 33 1 4.1122 -1.1217 -1.3322 34 1 3.1079 -2.5440 -0.9331 35 1 0.9133 -0.9373 -5.1255 36 1 1.7726 -3.1637 -6.1809 37 1 3.2273 -2.1229 -6.1055 38 1 2.4207 -4.4147 -4.2880 39 1 4.0630 -3.8765 -4.7745 40 1 4.1137 -2.1501 -3.1694 41 1 2.9412 -3.2055 -2.3233 42 1 4.1230 0.8132 0.4208 43 1 5.4391 -0.3797 0.5394 44 1 3.6646 0.6197 2.8151 45 1 5.4039 0.9377 2.5991 46 1 4.8888 -3.1451 6.1948 47 1 4.4726 -3.0681 3.4419 48 1 3.0576 -1.9864 3.3649 49 1 3.1678 -3.2612 1.2892 50 1 4.8715 -2.8008 1.0554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086916217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:40 Heat of formation + Delta-G solvation = -11.428715 kcal Electronic energy + Delta-G solvation = -28360.630636 eV Core-core repulsion = 24773.622513 eV Total energy + Delta-G solvation = -3587.008123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90040 -40.12846 -38.63836 -37.44570 -34.77360 -33.14009 -32.64562 -31.55145 -30.18921 -29.18249 -28.66947 -27.17902 -25.83231 -24.24547 -23.61488 -22.65951 -21.83590 -21.01499 -19.64066 -19.19614 -18.33658 -17.71705 -17.36892 -16.81033 -16.78066 -16.02175 -15.69763 -15.51259 -15.15529 -15.10831 -14.92876 -14.61650 -14.31877 -14.06640 -13.80866 -13.59311 -13.28462 -13.17110 -13.10351 -13.01131 -12.88735 -12.79351 -12.59079 -12.57477 -12.32141 -12.22798 -12.17568 -12.04107 -11.88815 -11.73443 -11.72036 -11.34691 -11.04431 -10.99648 -10.67878 -10.47478 -10.03114 -9.48101 -8.59975 -7.82913 -5.29327 0.40034 1.48869 1.50068 1.58401 1.98929 2.23870 2.53856 3.29890 3.35534 3.51719 3.63865 3.71752 3.76854 3.81600 4.04985 4.10920 4.21331 4.24989 4.27441 4.33459 4.46926 4.49076 4.60012 4.64791 4.69778 4.72142 4.79233 4.83489 4.84119 4.89568 4.96175 4.98189 5.00657 5.07222 5.12843 5.19390 5.20729 5.25719 5.30675 5.33000 5.38334 5.39644 5.44959 5.54528 5.58742 5.60287 5.69791 5.86099 6.44442 6.54683 7.13905 7.20557 7.92185 8.42805 9.22405 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.003383 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.184094 B = 8275.906333 C = 9118.139651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.054 4.054 6 C 0.111 3.889 7 N -0.605 5.605 8 C 0.572 3.428 9 O -0.583 6.583 10 C -0.212 4.212 11 C -0.070 4.070 12 C -0.102 4.102 13 C -0.121 4.121 14 C -0.095 4.095 15 C -0.106 4.106 16 C 0.142 3.858 17 N -0.608 5.608 18 C -0.259 4.259 19 H 0.064 0.936 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.285 1.285 24 H -0.271 1.271 25 H -0.298 1.298 26 C 0.180 3.820 27 C -0.112 4.112 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.049 0.951 46 H 0.248 0.752 47 H 0.052 0.948 48 H -0.002 1.002 49 H 0.068 0.932 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.201 -1.224 -20.376 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.055 4.055 6 C -0.011 4.011 7 N -0.337 5.337 8 C 0.365 3.635 9 O -0.465 6.465 10 C -0.215 4.215 11 C -0.090 4.090 12 C -0.138 4.138 13 C -0.158 4.158 14 C -0.132 4.132 15 C -0.145 4.145 16 C 0.017 3.983 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.580 5.580 22 Si 0.793 3.207 23 H -0.211 1.211 24 H -0.196 1.196 25 H -0.224 1.224 26 C 0.055 3.945 27 C -0.151 4.151 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.035 0.965 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.016 0.984 49 H 0.087 0.913 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.717 -0.936 -20.416 20.975 hybrid contribution 0.521 -0.021 1.228 1.334 sum -4.196 -0.957 -19.188 19.665 Atomic orbital electron populations 1.22006 0.94070 1.02038 1.02910 1.21936 0.94866 0.95530 0.84369 0.90906 1.22832 0.95488 1.00175 0.96430 1.20887 0.94978 0.96271 0.93329 1.22555 0.86736 0.97405 0.94396 1.48556 1.28329 1.47990 1.08863 1.18133 0.82119 0.81808 0.81445 1.90700 1.30314 1.44046 1.81480 1.21882 1.03044 1.02005 0.94566 1.24303 0.95118 0.95847 0.93749 1.21531 0.99311 0.95012 0.97967 1.22517 1.02474 0.97294 0.93532 1.21659 0.96489 0.94837 1.00197 1.21762 0.98401 0.97399 0.96946 1.21073 0.97516 0.88234 0.91463 1.44266 1.29039 1.07591 1.52267 1.19503 0.93065 1.21768 1.04649 0.91840 1.25755 0.99295 1.02042 0.97340 1.70161 1.25740 1.34457 1.27662 0.85317 0.80062 0.78309 0.77050 1.21136 1.19555 1.22434 1.20485 0.91628 0.90570 0.91841 1.21817 1.00641 0.95695 0.96944 0.90676 0.91733 0.93327 0.90977 0.90447 0.90107 0.89163 0.85229 0.88722 0.88229 0.90573 0.88823 0.89601 0.90368 0.91246 0.91933 0.96473 0.93265 0.94239 0.92919 0.98355 0.91317 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 8.67 71.98 0.62 -3.53 16 2 C 0.14 3.73 3.42 45.50 0.16 3.89 16 3 H 0.07 2.03 7.74 -2.39 -0.02 2.01 16 4 C -0.11 -3.24 4.35 31.81 0.14 -3.10 16 5 C -0.05 -1.56 0.55 -51.91 -0.03 -1.59 16 6 C 0.11 2.64 4.52 86.48 0.39 3.03 16 7 N -0.61 -16.21 3.25 -792.87 -2.58 -18.79 16 8 C 0.57 16.41 7.54 86.57 0.65 17.06 16 9 O -0.58 -20.23 14.66 -4.08 -0.06 -20.29 16 10 C -0.21 -4.66 6.03 -18.57 -0.11 -4.77 16 11 C -0.07 -1.29 10.44 24.65 0.26 -1.03 16 12 C -0.10 -1.16 6.79 30.51 0.21 -0.95 16 13 C -0.12 -1.41 7.17 31.73 0.23 -1.19 16 14 C -0.10 -1.56 4.76 30.58 0.15 -1.42 16 15 C -0.11 -3.27 4.74 30.46 0.14 -3.12 16 16 C 0.14 5.60 6.19 86.40 0.53 6.13 16 17 N -0.61 -29.19 2.99 -699.49 -2.09 -31.28 16 18 C -0.26 -13.90 9.58 84.03 0.81 -13.10 16 19 H 0.06 3.34 7.87 -2.91 -0.02 3.32 16 20 C -0.05 -2.68 4.97 84.86 0.42 -2.26 16 21 N -0.93 -54.12 11.09 21.65 0.24 -53.88 16 22 Si 0.96 44.12 29.58 68.60 2.03 46.15 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 26 C 0.18 8.20 4.99 86.24 0.43 8.63 16 27 C -0.11 -3.76 4.70 30.30 0.14 -3.62 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.97 6.13 -2.39 -0.01 1.96 16 30 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 2.13 7.92 -2.39 -0.02 2.11 16 32 H 0.08 2.49 6.08 -2.39 -0.01 2.47 16 33 H 0.08 1.76 6.99 -2.39 -0.02 1.74 16 34 H 0.09 1.94 5.11 -2.39 -0.01 1.93 16 35 H 0.13 2.48 8.04 -2.91 -0.02 2.46 16 36 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.86 8.14 -2.38 -0.02 0.85 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 1.31 7.36 -2.39 -0.02 1.30 16 41 H 0.08 1.34 5.64 -2.39 -0.01 1.32 16 42 H 0.07 1.90 7.47 -2.39 -0.02 1.89 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.02 0.69 6.47 -2.39 -0.02 0.68 16 45 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 46 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 47 H 0.05 2.78 6.00 -2.39 -0.01 2.76 16 48 H 0.00 -0.08 7.56 -2.38 -0.02 -0.10 16 49 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 50 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -65.61 368.16 3.60 -62.02 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.92 Total: 17.00 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.14 Total: -0.93 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.43 Total: -103.94 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.06 Total: -20.29 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -65.61 3.60 -62.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086916217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.588 kcal (2) G-P(sol) polarization free energy of solvation -65.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds