Wall clock time and date at job start Tue Mar 31 2020 13:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47331 * 295.36994 * 3 2 1 5 5 C 1.50699 * 112.84915 * 300.91407 * 4 3 2 6 6 O 1.21280 * 120.00304 * 115.18577 * 5 4 3 7 7 N 1.34775 * 119.99660 * 295.18032 * 5 4 3 8 8 C 1.46931 * 120.63254 * 355.06896 * 7 5 4 9 9 C 1.53192 * 108.77412 * 233.58694 * 8 7 5 10 10 C 1.53037 * 109.31350 * 305.36301 * 9 8 7 11 11 H 1.09002 * 109.46414 * 301.34782 * 10 9 8 12 12 C 1.53002 * 109.45815 * 181.37264 * 10 9 8 13 13 C 1.53040 * 109.53855 * 61.37075 * 10 9 8 14 14 H 1.09000 * 109.49924 * 58.57952 * 13 10 9 15 15 C 1.53000 * 109.49896 * 178.68520 * 13 10 9 16 16 N 1.46498 * 109.46966 * 185.00262 * 15 13 10 17 17 C 1.36939 * 120.00041 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99701 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99970 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99860 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00213 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46779 * 90.00272 * 21 19 17 23 23 H 1.48497 * 109.47328 * 209.99845 * 21 19 17 24 24 H 1.48496 * 109.47305 * 330.00258 * 21 19 17 25 25 C 1.46927 * 120.63109 * 175.05132 * 7 5 4 26 26 C 1.53783 * 113.68943 * 72.18016 * 4 3 2 27 27 C 1.53778 * 87.08013 * 89.12681 * 26 4 3 28 28 C 1.53774 * 87.08472 * 25.43350 * 27 26 4 29 29 H 4.44648 * 5.63454 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.46891 * 175.36652 * 3 2 1 31 31 H 1.09005 * 109.47063 * 55.36946 * 3 2 1 32 32 H 1.09002 * 109.58338 * 113.80196 * 8 7 5 33 33 H 1.09001 * 109.58607 * 353.37736 * 8 7 5 34 34 H 1.09004 * 109.49129 * 185.41141 * 9 8 7 35 35 H 1.08999 * 109.49681 * 65.31922 * 9 8 7 36 36 H 1.09004 * 109.46852 * 60.00845 * 12 10 9 37 37 H 1.09007 * 109.47134 * 179.97438 * 12 10 9 38 38 H 1.08997 * 109.47604 * 300.00113 * 12 10 9 39 39 H 1.09007 * 109.46372 * 304.99113 * 15 13 10 40 40 H 1.08994 * 109.47393 * 64.99200 * 15 13 10 41 41 H 0.97008 * 120.00077 * 359.97438 * 16 15 13 42 42 H 0.97001 * 119.99991 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.58588 * 6.61927 * 25 7 5 44 44 H 1.09005 * 109.69933 * 246.27180 * 25 7 5 45 45 H 1.08997 * 113.61221 * 203.67851 * 26 4 3 46 46 H 1.09001 * 113.61714 * 334.57932 * 26 4 3 47 47 H 1.09002 * 113.61579 * 270.88063 * 27 26 4 48 48 H 1.09007 * 113.61239 * 139.98359 * 27 26 4 49 49 H 1.09004 * 113.61555 * 220.02263 * 28 27 26 50 50 H 1.08995 * 113.61939 * 89.11048 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6172 1.3034 5 6 2.6784 0.1209 2.5273 6 8 1.9391 -0.4282 3.3164 7 7 3.0728 1.3911 2.7449 8 6 4.0519 2.0335 1.8575 9 6 5.2014 2.5836 2.7077 10 6 4.6345 3.5052 3.7900 11 1 4.0801 4.3181 3.3209 12 6 5.7826 4.0834 4.6197 13 6 3.6980 2.7087 4.7014 14 1 4.2457 1.8808 5.1516 15 6 3.1573 3.6231 5.8025 16 7 2.3570 2.8347 6.7428 17 6 1.7680 3.4435 7.8187 18 1 1.8937 4.5048 7.9742 19 6 1.0093 2.6966 8.7093 20 7 0.4435 3.2817 9.7437 21 14 0.7911 0.8610 8.4399 22 1 1.8782 0.1261 9.1353 23 1 -0.5225 0.4334 8.9844 24 1 0.8446 0.5644 6.9858 25 6 2.5314 2.1601 3.8738 26 6 2.9567 -2.1398 1.3851 27 6 4.3354 -2.2773 0.7180 28 6 4.6689 -0.8947 1.3027 29 1 -1.0499 0.0001 0.0003 30 1 3.0088 1.0251 -0.0830 31 1 3.0096 -0.5832 -0.8456 32 1 3.5741 2.8504 1.3167 33 1 4.4392 1.3009 1.1494 34 1 5.8864 3.1460 2.0731 35 1 5.7350 1.7568 3.1767 36 1 6.4492 4.6518 3.9711 37 1 5.3790 4.7402 5.3904 38 1 6.3374 3.2707 5.0885 39 1 3.9903 4.0849 6.3327 40 1 2.5349 4.3992 5.3572 41 1 2.2444 1.8814 6.6032 42 1 -0.0870 2.7598 10.3659 43 1 1.9154 1.5109 4.4961 44 1 1.9281 2.9871 3.4994 45 1 2.9252 -2.5218 2.4054 46 1 2.1352 -2.5062 0.7694 47 1 4.2940 -2.2923 -0.3711 48 1 4.9417 -3.0837 1.1307 49 1 5.2297 -0.2558 0.6205 50 1 5.1055 -0.9363 2.3005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132884403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:04 Heat of formation + Delta-G solvation = 46.022124 kcal Electronic energy + Delta-G solvation = -28284.787965 eV Core-core repulsion = 24700.271097 eV Total energy + Delta-G solvation = -3584.516867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21187 -39.01405 -37.38300 -35.13461 -33.93625 -33.65257 -31.92837 -30.34655 -29.49005 -28.24133 -26.42222 -25.83368 -24.98924 -23.23917 -22.89966 -21.11300 -20.49412 -19.72686 -18.99428 -18.23252 -17.48706 -16.73193 -16.23944 -15.70025 -15.28029 -14.86251 -14.71273 -14.47753 -14.18431 -14.03894 -13.83079 -13.53235 -13.34437 -13.13897 -12.98518 -12.68618 -12.57761 -12.51651 -12.14520 -11.85411 -11.80759 -11.65656 -11.38554 -11.24408 -11.16600 -10.94982 -10.84640 -10.71474 -10.61173 -10.34403 -10.30755 -10.19310 -10.11133 -9.97992 -9.52203 -9.42165 -8.83383 -8.51946 -7.15934 -5.71088 -3.06148 2.59208 2.67166 2.76977 3.01057 3.46665 3.53743 3.56741 3.98531 4.11565 4.34179 4.41932 4.49947 4.59607 4.63977 4.67450 4.78670 4.83930 5.05986 5.07246 5.18431 5.22520 5.23360 5.29949 5.43417 5.49461 5.54995 5.57005 5.59013 5.61506 5.65791 5.73476 5.76350 5.77950 5.80130 5.87428 5.88179 5.92569 6.05584 6.10940 6.13956 6.27392 6.37900 6.40860 6.59103 6.74852 6.80956 7.47959 7.50431 8.04877 8.27206 8.48089 9.27537 10.00589 10.19985 11.47229 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.004331 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.839856 B = 6463.953725 C = 7617.232426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.195 4.195 3 C 0.016 3.984 4 C -0.103 4.103 5 C 0.529 3.471 6 O -0.531 6.531 7 N -0.608 5.608 8 C 0.099 3.901 9 C -0.128 4.128 10 C -0.083 4.083 11 H 0.072 0.928 12 C -0.148 4.148 13 C -0.105 4.105 14 H 0.073 0.927 15 C 0.163 3.837 16 N -0.757 5.757 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.007 3.993 20 N -0.935 5.935 21 Si 0.878 3.122 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.272 1.272 25 C 0.118 3.882 26 C -0.111 4.111 27 C -0.141 4.141 28 C -0.124 4.124 29 H 0.216 0.784 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.036 0.964 40 H 0.026 0.974 41 H 0.362 0.638 42 H 0.259 0.741 43 H 0.096 0.904 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.030 -6.023 -25.653 28.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.195 4.195 3 C -0.021 4.021 4 C -0.106 4.106 5 C 0.316 3.684 6 O -0.406 6.406 7 N -0.341 5.341 8 C -0.024 4.024 9 C -0.166 4.166 10 C -0.102 4.102 11 H 0.091 0.909 12 C -0.206 4.206 13 C -0.125 4.125 14 H 0.091 0.909 15 C 0.035 3.965 16 N -0.403 5.403 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.189 4.189 20 N -0.583 5.583 21 Si 0.708 3.292 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.198 1.198 25 C -0.004 4.004 26 C -0.149 4.149 27 C -0.179 4.179 28 C -0.161 4.161 29 H 0.233 0.767 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.195 0.805 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.553 -6.140 -25.057 28.267 hybrid contribution -0.519 -1.157 0.016 1.269 sum 11.034 -7.297 -25.041 28.320 Atomic orbital electron populations 1.24909 0.95989 1.00291 0.99568 1.22713 0.94226 1.01085 1.01438 1.18523 0.85609 1.02143 0.95783 1.22096 0.97919 0.97215 0.93404 1.20257 0.80376 0.81138 0.86632 1.90728 1.36344 1.66584 1.46982 1.48098 1.43472 1.12796 1.29716 1.21973 0.89784 0.97920 0.92750 1.21986 0.97175 0.99718 0.97759 1.21072 0.96427 0.97340 0.95411 0.90943 1.21890 0.97613 1.01009 1.00053 1.21761 0.95875 0.98905 0.95922 0.90892 1.20707 0.93941 0.92861 0.88967 1.42782 1.61363 1.07045 1.29073 1.19041 1.23888 0.94919 0.99492 0.89237 1.24633 0.99779 0.97375 0.97118 1.69703 1.38139 1.34996 1.15481 0.86632 0.77390 0.87082 0.78090 1.21146 1.21705 1.19787 1.21713 0.95900 0.95661 0.87140 1.22831 0.97429 0.92162 1.02455 1.22873 0.97364 0.97251 1.00386 1.23049 0.92947 0.97610 1.02499 0.76683 0.88803 0.88496 0.91542 0.89311 0.90769 0.91464 0.93122 0.91501 0.92796 0.94676 0.95604 0.80533 0.93117 0.88598 0.91448 0.88864 0.90874 0.89788 0.90797 0.90190 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 19.25 29.55 0.57 -1.64 16 2 C -0.19 -2.27 12.35 -37.12 -0.46 -2.73 16 3 C 0.02 0.14 4.76 -29.52 -0.14 0.00 16 4 C -0.10 -1.07 0.28 -154.85 -0.04 -1.11 16 5 C 0.53 7.92 6.07 -10.99 -0.07 7.85 16 6 O -0.53 -10.65 15.55 5.56 0.09 -10.56 16 7 N -0.61 -8.21 2.97 -172.76 -0.51 -8.72 16 8 C 0.10 0.90 4.93 -3.71 -0.02 0.88 16 9 C -0.13 -1.15 5.36 -26.61 -0.14 -1.29 16 10 C -0.08 -0.96 2.23 -90.58 -0.20 -1.16 16 11 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.15 -1.64 8.82 37.16 0.33 -1.31 16 13 C -0.10 -1.63 1.92 -90.50 -0.17 -1.81 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.16 3.16 5.41 -4.04 -0.02 3.14 16 16 N -0.76 -18.74 5.18 -59.91 -0.31 -19.05 16 17 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 18 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.94 -30.29 13.97 55.49 0.78 -29.52 16 21 Si 0.88 23.65 27.73 -169.99 -4.71 18.93 16 22 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.29 -7.88 7.11 56.52 0.40 -7.47 16 24 H -0.27 -7.21 6.52 56.52 0.37 -6.84 16 25 C 0.12 1.94 5.53 -3.71 -0.02 1.92 16 26 C -0.11 -1.15 6.77 -25.92 -0.18 -1.33 16 27 C -0.14 -0.99 7.73 -25.92 -0.20 -1.19 16 28 C -0.12 -0.93 5.79 -25.92 -0.15 -1.08 16 29 H 0.22 1.88 7.80 -54.10 -0.42 1.45 16 30 H 0.09 0.68 6.01 -51.93 -0.31 0.37 16 31 H 0.10 0.60 7.30 -51.93 -0.38 0.22 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.61 3.31 -51.93 -0.17 0.44 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.83 6.29 -51.93 -0.33 0.50 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.04 0.68 6.14 -51.92 -0.32 0.36 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.36 9.06 4.76 -40.82 -0.19 8.87 16 42 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 43 H 0.10 1.98 6.21 -51.93 -0.32 1.65 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.16 7.70 -51.93 -0.40 0.76 16 46 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 47 H 0.08 0.45 7.60 -51.93 -0.39 0.05 16 48 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 49 H 0.08 0.41 7.04 -51.93 -0.37 0.04 16 50 H 0.09 0.79 8.09 -51.93 -0.42 0.36 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -36.24 383.21 -8.33 -44.56 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.26 Total: 6.61 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.17 Total: -8.04 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.05 Total: -57.28 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -4.71 Total: 18.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.24 -8.33 -44.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132884403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.586 kcal (2) G-P(sol) polarization free energy of solvation -36.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds