Wall clock time and date at job start Tue Mar 31 2020 13:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47293 * 2 1 4 4 N 1.46896 * 109.47180 * 240.00188 * 2 1 3 5 5 C 1.46960 * 111.00115 * 56.19935 * 4 2 1 6 6 C 1.53054 * 109.36574 * 183.18971 * 5 4 2 7 7 N 1.46958 * 109.36234 * 301.60141 * 6 5 4 8 8 C 1.46907 * 110.99934 * 183.18562 * 7 6 5 9 9 C 1.50700 * 109.46902 * 66.20074 * 8 7 6 10 10 C 1.38309 * 119.92830 * 269.72957 * 9 8 7 11 11 C 1.38104 * 120.06491 * 179.72622 * 10 9 8 12 12 C 1.38881 * 119.93006 * 0.56478 * 11 10 9 13 13 O 1.35752 * 120.06655 * 179.68392 * 12 11 10 14 14 C 1.34833 * 116.99811 * 174.48863 * 13 12 11 15 15 H 1.07994 * 119.99920 * 5.06392 * 14 13 12 16 16 C 1.38661 * 119.99823 * 185.05436 * 14 13 12 17 17 N 1.31555 * 119.99784 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99701 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47110 * 90.00581 * 18 16 14 20 20 H 1.48503 * 109.46847 * 210.00382 * 18 16 14 21 21 H 1.48492 * 109.47340 * 330.00417 * 18 16 14 22 22 C 1.38873 * 119.86422 * 359.70511 * 12 11 10 23 23 C 1.38102 * 119.93280 * 0.02562 * 22 12 11 24 24 C 1.46950 * 110.88254 * 59.31983 * 7 6 5 25 25 C 1.46954 * 111.00150 * 179.97438 * 4 2 1 26 26 H 1.08992 * 109.48881 * 296.79881 * 25 4 2 27 27 C 1.53006 * 109.48943 * 56.84735 * 25 4 2 28 28 H 1.09000 * 109.47086 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46948 * 59.99745 * 1 2 3 30 30 H 1.08998 * 109.47230 * 300.00453 * 1 2 3 31 31 H 1.08992 * 109.47104 * 119.99969 * 2 1 3 32 32 H 1.09005 * 109.47332 * 300.00020 * 3 2 1 33 33 H 1.08998 * 109.47353 * 59.99622 * 3 2 1 34 34 H 1.08993 * 109.47320 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.48957 * 303.15624 * 5 4 2 36 36 H 1.08999 * 109.48807 * 63.22367 * 5 4 2 37 37 H 1.08996 * 109.49460 * 181.63164 * 6 5 4 38 38 H 1.09004 * 109.48887 * 61.56784 * 6 5 4 39 39 H 1.08998 * 109.47104 * 186.19885 * 8 7 6 40 40 H 1.08995 * 109.46858 * 306.20250 * 8 7 6 41 41 H 1.07994 * 119.96784 * 359.97438 * 10 9 8 42 42 H 1.08000 * 120.03313 * 180.27065 * 11 10 9 43 43 H 0.97002 * 119.99341 * 179.97438 * 17 16 14 44 44 H 1.07997 * 120.03874 * 180.02562 * 22 12 11 45 45 H 1.08000 * 119.96729 * 179.97438 * 23 22 12 46 46 H 1.08997 * 109.49130 * 180.70793 * 24 7 6 47 47 H 1.09009 * 109.48889 * 60.64509 * 24 7 6 48 48 H 1.08997 * 109.47242 * 59.99362 * 27 25 4 49 49 H 1.08994 * 109.47342 * 180.02562 * 27 25 4 50 50 H 1.09005 * 109.46456 * 299.99465 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 1.4757 -0.0805 -2.4198 6 6 1.9445 -0.8774 -3.6395 7 7 3.4136 -0.8971 -3.6734 8 6 3.9033 -1.5896 -4.8729 9 6 3.5302 -0.7961 -6.0985 10 6 2.3279 -1.0383 -6.7378 11 6 1.9806 -0.3089 -7.8579 12 6 2.8454 0.6605 -8.3491 13 8 2.5097 1.3746 -9.4537 14 6 3.3389 2.3761 -9.8105 15 1 4.2646 2.5272 -9.2752 16 6 3.0033 3.2118 -10.8648 17 7 1.8754 3.0278 -11.5166 18 14 4.1525 4.5988 -11.3595 19 1 5.1116 4.1065 -12.3808 20 1 3.3601 5.7204 -11.9247 21 1 4.8993 5.0722 -10.1666 22 6 4.0544 0.8974 -7.7082 23 6 4.3935 0.1686 -6.5853 24 6 3.9576 -1.5089 -2.4531 25 6 3.4887 -0.7115 -1.2337 26 1 3.8642 0.3096 -1.2998 27 6 4.0206 -1.3695 0.0411 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 0.3866 -0.0891 -2.3765 36 1 1.8287 0.9476 -2.4996 37 1 1.5661 -0.4086 -4.5478 38 1 1.5686 -1.8985 -3.5733 39 1 4.9876 -1.6867 -4.8191 40 1 3.4521 -2.5801 -4.9301 41 1 1.6582 -1.7958 -6.3583 42 1 1.0397 -0.4955 -8.3541 43 1 1.6405 3.6127 -12.2539 44 1 4.7288 1.6508 -8.0875 45 1 5.3338 0.3521 -6.0867 46 1 5.0466 -1.5004 -2.4964 47 1 3.6045 -2.5372 -2.3733 48 1 3.6455 -2.3908 0.1066 49 1 5.1101 -1.3831 0.0157 50 1 3.6849 -0.8028 0.9097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137124180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:09 Heat of formation + Delta-G solvation = 9.781983 kcal Electronic energy + Delta-G solvation = -27117.449908 eV Core-core repulsion = 23531.361551 eV Total energy + Delta-G solvation = -3586.088358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.09692 -38.99665 -37.24274 -35.80625 -33.22838 -32.31064 -31.65150 -30.16109 -29.61410 -27.49536 -27.44343 -26.19795 -25.22575 -23.80338 -22.25672 -21.77434 -21.00684 -20.16507 -18.96401 -17.95198 -16.92254 -16.57101 -15.76281 -15.39368 -14.94995 -14.80049 -14.59616 -14.48187 -14.30803 -13.99457 -13.91208 -13.55470 -13.40232 -12.96804 -12.74383 -12.67889 -12.58242 -12.38049 -12.17452 -12.04445 -11.83067 -11.70660 -11.57108 -11.38399 -11.28598 -11.21919 -10.97924 -10.84995 -10.72307 -10.59325 -10.49194 -10.41650 -10.25328 -9.30559 -8.81781 -8.40901 -8.19034 -8.10839 -7.14596 -6.43736 -4.02351 2.24031 2.31831 3.13329 3.14564 3.19367 3.71063 3.97595 4.01820 4.60858 4.65008 4.71615 4.88016 4.90812 5.08599 5.10521 5.13102 5.20585 5.28995 5.30853 5.33086 5.40300 5.41729 5.43042 5.47933 5.57208 5.61392 5.65135 5.69257 5.76700 5.77654 5.82580 5.87126 5.89640 5.93936 6.01419 6.03580 6.13196 6.20491 6.24032 6.45394 6.72645 6.91854 6.94583 6.97326 7.07740 7.16623 7.23176 7.31989 7.44789 7.47502 7.85720 8.01731 9.02200 9.72804 10.74436 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.002626 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.154207 B =10660.192322 C =10995.086522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 C -0.188 4.188 4 N -0.528 5.528 5 C 0.052 3.948 6 C 0.056 3.944 7 N -0.534 5.534 8 C 0.115 3.885 9 C -0.178 4.178 10 C -0.069 4.069 11 C -0.193 4.193 12 C 0.155 3.845 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.235 4.235 23 C -0.050 4.050 24 C 0.063 3.937 25 C 0.081 3.919 26 H 0.053 0.947 27 C -0.146 4.146 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.038 0.962 48 H 0.062 0.938 49 H 0.059 0.941 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -7.430 22.162 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 C -0.247 4.247 4 N -0.254 5.254 5 C -0.076 4.076 6 C -0.072 4.072 7 N -0.259 5.259 8 C -0.012 4.012 9 C -0.179 4.179 10 C -0.088 4.088 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.254 4.254 23 C -0.069 4.069 24 C -0.066 4.066 25 C -0.028 4.028 26 H 0.071 0.929 27 C -0.204 4.204 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.056 0.944 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.491 -7.344 21.795 23.047 hybrid contribution 0.622 0.814 -0.282 1.063 sum 2.113 -6.529 21.513 22.581 Atomic orbital electron populations 1.21909 0.94484 1.02326 1.01777 1.21726 0.95523 0.92382 0.93855 1.22481 1.01665 0.98174 1.02367 1.62470 1.07671 1.53235 1.01994 1.22253 0.99566 0.96982 0.88805 1.22211 0.87716 0.98947 0.98289 1.62198 1.08204 1.54053 1.01424 1.20766 0.99353 0.93657 0.87421 1.19065 0.97189 1.02836 0.98806 1.20484 0.95462 0.98065 0.94743 1.20169 1.00646 1.00635 0.99825 1.19385 0.92278 0.91350 0.86818 1.83977 1.47896 1.40873 1.35491 1.21326 1.01948 1.06981 1.16463 0.89086 1.25282 0.97116 0.98324 0.95797 1.70041 1.21721 1.37772 1.20340 0.85723 0.79100 0.79550 0.79139 1.19894 1.20267 1.19188 1.21153 0.98978 1.05420 0.99882 1.20548 0.97875 0.93911 0.94527 1.22166 0.99239 0.96079 0.89091 1.21662 0.87562 0.98823 0.94728 0.92906 1.21867 1.00559 1.01362 0.96605 0.91941 0.92311 0.92420 0.89831 0.92159 0.92335 0.92362 0.90119 0.93659 0.89255 0.94611 0.90984 0.94959 0.87517 0.86666 0.92057 0.85679 0.87623 0.90698 0.94419 0.91931 0.92195 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.84 37.16 0.33 -0.86 16 2 C 0.07 0.64 2.56 -67.71 -0.17 0.47 16 3 C -0.19 -1.65 8.50 37.16 0.32 -1.33 16 4 N -0.53 -5.49 4.55 -218.56 -1.00 -6.49 16 5 C 0.05 0.60 4.83 -3.76 -0.02 0.58 16 6 C 0.06 0.74 5.26 -3.76 -0.02 0.72 16 7 N -0.53 -7.11 4.70 -235.90 -1.11 -8.22 16 8 C 0.11 1.59 5.12 -4.97 -0.03 1.56 16 9 C -0.18 -3.03 4.89 -104.57 -0.51 -3.54 16 10 C -0.07 -1.22 7.92 -39.60 -0.31 -1.53 16 11 C -0.19 -4.09 9.99 -39.39 -0.39 -4.48 16 12 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 13 O -0.18 -5.14 9.76 0.04 0.00 -5.14 16 14 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 15 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 18 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 22 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 23 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 24 C 0.06 0.70 4.89 -3.77 -0.02 0.68 16 25 C 0.08 0.82 2.07 -67.65 -0.14 0.68 16 26 H 0.05 0.61 6.48 -51.93 -0.34 0.27 16 27 C -0.15 -1.17 8.86 37.16 0.33 -0.84 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.50 6.28 -51.93 -0.33 0.18 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.69 6.25 -51.93 -0.32 0.36 16 32 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.53 6.47 -51.93 -0.34 0.19 16 35 H 0.08 0.87 6.06 -51.93 -0.31 0.55 16 36 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 37 H 0.09 1.32 5.97 -51.93 -0.31 1.01 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.93 7.97 -51.93 -0.41 0.51 16 40 H 0.03 0.43 8.06 -51.93 -0.42 0.01 16 41 H 0.11 1.62 8.01 -52.49 -0.42 1.20 16 42 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 46 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 47 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.43 6.36 -51.93 -0.33 0.10 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -29.94 379.14 -10.24 -40.18 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.14 Total: 3.96 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -1.45 Total: -20.92 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -1.35 Total: -39.42 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.14 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.94 -10.24 -40.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137124180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.965 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds