Wall clock time and date at job start Tue Mar 31 2020 13:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35665 * 116.99880 * 2 1 4 4 C 1.38034 * 120.21362 * 0.28371 * 3 2 1 5 5 C 1.39221 * 119.98155 * 180.24559 * 4 3 2 6 6 N 1.38923 * 119.79967 * 179.74373 * 5 4 3 7 7 C 1.46491 * 120.00080 * 179.72967 * 6 5 4 8 8 C 1.53004 * 109.47198 * 180.02562 * 7 6 5 9 9 H 1.08993 * 108.73532 * 56.69401 * 8 7 6 10 10 C 1.50460 * 108.76866 * 298.50119 * 8 7 6 11 11 C 1.54507 * 108.85182 * 146.92925 * 10 8 7 12 12 C 1.45860 * 111.59121 * 77.19033 * 11 10 8 13 13 N 1.47803 * 112.91841 * 298.67112 * 12 11 10 14 14 C 1.44280 * 109.45934 * 83.26341 * 13 12 11 15 15 C 1.54063 * 111.97637 * 263.56230 * 14 13 12 16 16 H 1.08999 * 108.84462 * 280.40918 * 15 14 13 17 17 C 1.53005 * 108.91685 * 161.80870 * 15 14 13 18 18 C 1.39719 * 120.40135 * 359.47063 * 5 4 3 19 19 C 1.36225 * 120.43424 * 0.27479 * 18 5 4 20 20 C 1.40853 * 120.00462 * 359.97366 * 19 18 5 21 21 C 1.40967 * 120.20101 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00253 * 204.85129 * 21 20 19 23 23 C 1.39841 * 119.99801 * 24.84749 * 21 20 19 24 24 N 1.30952 * 120.00301 * 17.82985 * 23 21 20 25 25 Si 1.86801 * 120.00001 * 197.82888 * 23 21 20 26 26 H 1.48499 * 109.47321 * 90.00180 * 25 23 21 27 27 H 1.48509 * 109.47058 * 210.00076 * 25 23 21 28 28 H 1.48496 * 109.47501 * 330.00116 * 25 23 21 29 29 H 1.09003 * 109.47318 * 299.99174 * 1 2 3 30 30 H 1.09006 * 109.47270 * 59.99614 * 1 2 3 31 31 H 1.09004 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.01262 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99978 * 359.72733 * 6 5 4 34 34 H 1.09000 * 109.47478 * 59.99748 * 7 6 5 35 35 H 1.08998 * 109.47405 * 299.99759 * 7 6 5 36 36 H 1.09000 * 109.57508 * 266.74113 * 10 8 7 37 37 H 1.09008 * 109.57699 * 26.98871 * 10 8 7 38 38 H 1.09004 * 109.05418 * 197.73649 * 11 10 8 39 39 H 1.09005 * 109.05577 * 316.64201 * 11 10 8 40 40 H 1.09002 * 108.79707 * 59.56312 * 12 11 10 41 41 H 1.09005 * 108.79262 * 177.79032 * 12 11 10 42 42 H 1.00893 * 111.00241 * 206.13204 * 13 12 11 43 43 H 1.08996 * 108.97366 * 142.91836 * 14 13 12 44 44 H 1.09000 * 108.98066 * 24.20614 * 14 13 12 45 45 H 1.08998 * 109.47139 * 297.23376 * 17 15 14 46 46 H 1.08994 * 109.47338 * 177.22246 * 17 15 14 47 47 H 1.09002 * 109.46561 * 57.22784 * 17 15 14 48 48 H 1.08004 * 119.78507 * 180.29667 * 18 5 4 49 49 H 1.07996 * 119.99432 * 180.02562 * 19 18 5 50 50 H 0.96995 * 120.00229 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2974 2.3692 0.0059 5 6 1.9344 3.6071 0.0007 6 7 1.1783 4.7726 0.0013 7 6 1.8441 6.0775 0.0018 8 6 0.7909 7.1874 0.0030 9 1 0.1392 7.0507 0.8659 10 6 -0.0361 7.0715 -1.2486 11 6 -1.4809 7.5209 -0.9358 12 6 -1.5878 8.9739 -0.8662 13 7 -0.7509 9.5622 0.2006 14 6 0.5990 9.7250 -0.2821 15 6 1.5048 8.5492 0.1309 16 1 1.8143 8.6901 1.1665 17 6 2.7478 8.5433 -0.7613 18 6 3.3294 3.6844 0.0007 19 6 4.0834 2.5499 0.0001 20 6 3.4574 1.2881 0.0000 21 6 4.2336 0.1114 0.0000 22 1 3.8225 -0.8067 -0.3931 23 6 5.5359 0.1329 0.5088 24 7 5.9181 1.1127 1.2890 25 14 6.7306 -1.2362 0.0756 26 1 7.4727 -0.8736 -1.1586 27 1 7.6908 -1.4272 1.1924 28 1 5.9784 -2.4963 -0.1513 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2187 2.3169 0.0101 33 1 0.2096 4.7224 0.0013 34 1 2.4669 6.1681 -0.8881 35 1 2.4669 6.1674 0.8918 36 1 0.3851 7.7101 -2.0250 37 1 -0.0394 6.0361 -1.5895 38 1 -2.1453 7.1521 -1.7173 39 1 -1.7870 7.0952 0.0199 40 1 -1.2826 9.3949 -1.8242 41 1 -2.6286 9.2411 -0.6834 42 1 -1.1311 10.4424 0.5146 43 1 1.0111 10.6493 0.1227 44 1 0.5807 9.7932 -1.3699 45 1 2.4507 8.3792 -1.7971 46 1 3.4186 7.7448 -0.4446 47 1 3.2594 9.5022 -0.6776 48 1 3.8132 4.6501 0.0015 49 1 5.1612 2.6179 0.0004 50 1 6.8215 1.1278 1.6416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162459155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:14 Heat of formation + Delta-G solvation = -36.448928 kcal Electronic energy + Delta-G solvation = -27212.855884 eV Core-core repulsion = 23624.762803 eV Total energy + Delta-G solvation = -3588.093081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.76635 -40.26263 -38.35564 -36.80010 -35.48395 -34.37937 -33.54344 -30.92304 -30.63139 -28.94226 -28.05729 -27.59467 -25.82507 -25.00357 -23.92211 -22.70727 -21.70524 -21.62831 -19.53062 -19.21447 -18.46748 -17.67046 -17.23767 -16.67035 -16.42294 -16.24639 -16.16811 -15.94370 -15.53849 -15.32839 -15.23476 -14.65498 -14.49084 -14.19185 -13.98957 -13.72648 -13.63375 -13.40621 -13.24217 -12.91123 -12.79121 -12.74893 -12.68828 -12.41761 -12.26683 -12.13438 -11.98149 -11.77032 -11.57133 -11.47984 -11.38452 -11.23332 -11.12946 -11.09601 -10.95707 -10.12229 -9.36700 -8.92018 -8.48929 -8.15227 -5.88415 1.12162 1.13664 1.40879 1.53864 1.58156 2.31836 2.80469 2.88170 3.01084 3.28434 3.75409 3.80403 3.89836 3.97951 4.20167 4.27286 4.31481 4.37911 4.48817 4.49278 4.51025 4.57769 4.59871 4.68589 4.74508 4.75264 4.77236 4.80523 4.84059 4.95762 5.00311 5.06367 5.14303 5.16409 5.24921 5.27509 5.34887 5.36505 5.42854 5.47183 5.49199 5.62219 5.64526 5.90379 6.09497 6.16236 6.30197 6.53124 6.62201 6.84542 6.94551 7.10467 7.19411 7.40025 8.55546 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.002945 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.917645 B = 9505.697537 C =10746.569023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.046 3.954 4 C -0.252 4.252 5 C 0.153 3.847 6 N -0.745 5.745 7 C 0.137 3.863 8 C -0.065 4.065 9 H 0.067 0.933 10 C -0.111 4.111 11 C -0.115 4.115 12 C 0.061 3.939 13 N -0.691 5.691 14 C 0.070 3.930 15 C -0.074 4.074 16 H 0.063 0.937 17 C -0.153 4.153 18 C -0.205 4.205 19 C -0.114 4.114 20 C 0.012 3.988 21 C -0.488 4.488 22 H 0.060 0.940 23 C 0.029 3.971 24 N -0.847 5.847 25 Si 0.974 3.026 26 H -0.264 1.264 27 H -0.270 1.270 28 H -0.265 1.265 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.395 0.605 34 H 0.047 0.953 35 H 0.032 0.968 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.354 0.646 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.911 17.379 -4.097 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C 0.001 3.999 4 C -0.276 4.276 5 C 0.052 3.948 6 N -0.380 5.380 7 C 0.013 3.987 8 C -0.084 4.084 9 H 0.085 0.915 10 C -0.148 4.148 11 C -0.153 4.153 12 C -0.068 4.068 13 N -0.323 5.323 14 C -0.061 4.061 15 C -0.094 4.094 16 H 0.082 0.918 17 C -0.211 4.211 18 C -0.228 4.228 19 C -0.134 4.134 20 C 0.009 3.991 21 C -0.520 4.520 22 H 0.079 0.921 23 C -0.181 4.181 24 N -0.476 5.476 25 Si 0.796 3.204 26 H -0.188 1.188 27 H -0.195 1.195 28 H -0.190 1.190 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.229 0.771 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.173 0.827 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.122 0.878 49 H 0.124 0.876 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.393 16.820 -3.632 21.205 hybrid contribution 0.221 0.013 -0.473 0.522 sum -12.171 16.833 -4.105 21.174 Atomic orbital electron populations 1.23070 0.78679 1.04079 1.00926 1.85937 1.21515 1.27987 1.89879 1.19159 0.92001 0.83534 1.05250 1.20302 0.98476 0.90818 1.17957 1.17190 0.90221 0.86204 1.01219 1.44056 1.06904 1.01899 1.85107 1.21411 0.95462 0.82507 0.99317 1.20900 0.95550 0.93033 0.98955 0.91504 1.21400 0.95401 1.01047 0.96970 1.20604 0.96191 0.96542 1.01933 1.20835 0.97751 0.95518 0.92681 1.59785 1.02475 1.31775 1.38223 1.21703 0.89239 0.96992 0.98154 1.21485 0.94733 0.93490 0.99687 0.91798 1.21969 0.97381 1.02041 0.99688 1.20127 0.92271 0.97485 1.12894 1.20620 0.98945 0.91127 1.02744 1.17251 0.88707 0.94435 0.98742 1.19281 0.98490 0.96330 1.37918 0.92129 1.26524 0.99934 0.99247 0.92411 1.69928 1.19472 1.33273 1.24934 0.85328 0.77656 0.78592 0.78788 1.18843 1.19485 1.18967 0.93234 0.92846 0.87160 0.85672 0.77054 0.93444 0.94964 0.92055 0.92458 0.90919 0.92163 0.94611 0.90522 0.82724 0.90914 0.94059 0.92678 0.93184 0.91585 0.87805 0.87633 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.81 113.37 1.11 2.03 16 2 O -0.34 -16.37 9.78 -89.81 -0.88 -17.25 16 3 C 0.05 2.40 6.71 23.02 0.15 2.56 16 4 C -0.25 -11.30 8.86 22.46 0.20 -11.10 16 5 C 0.15 6.62 6.66 38.61 0.26 6.88 16 6 N -0.75 -24.94 5.04 -339.12 -1.71 -26.65 16 7 C 0.14 3.99 3.00 86.38 0.26 4.25 16 8 C -0.07 -1.44 1.67 -11.18 -0.02 -1.46 16 9 H 0.07 1.63 7.37 -2.39 -0.02 1.61 16 10 C -0.11 -2.20 4.83 30.28 0.15 -2.05 16 11 C -0.11 -1.85 5.53 28.92 0.16 -1.69 16 12 C 0.06 0.81 5.80 83.94 0.49 1.30 16 13 N -0.69 -9.72 6.40 -527.69 -3.38 -13.10 16 14 C 0.07 1.01 5.26 87.15 0.46 1.47 16 15 C -0.07 -1.39 2.76 -10.00 -0.03 -1.42 16 16 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 17 C -0.15 -2.87 8.02 71.98 0.58 -2.30 16 18 C -0.21 -9.90 9.22 22.16 0.20 -9.70 16 19 C -0.11 -6.33 8.62 22.44 0.19 -6.14 16 20 C 0.01 0.69 5.58 -21.17 -0.12 0.57 16 21 C -0.49 -29.00 8.70 23.33 0.20 -28.80 16 22 H 0.06 3.63 7.65 -2.91 -0.02 3.60 16 23 C 0.03 1.61 5.13 85.21 0.44 2.05 16 24 N -0.85 -47.84 10.97 21.81 0.24 -47.60 16 25 Si 0.97 42.31 29.60 68.60 2.03 44.34 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 30 H 0.05 1.62 7.68 -2.38 -0.02 1.60 16 31 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.13 4.72 6.29 -2.91 -0.02 4.71 16 33 H 0.39 11.60 7.70 -92.71 -0.71 10.89 16 34 H 0.05 1.44 6.41 -2.39 -0.02 1.42 16 35 H 0.03 1.04 7.91 -2.39 -0.02 1.02 16 36 H 0.06 1.19 6.38 -2.39 -0.02 1.17 16 37 H 0.06 1.32 6.58 -2.38 -0.02 1.30 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.09 7.59 -2.38 -0.02 1.07 16 40 H 0.04 0.46 7.24 -2.39 -0.02 0.45 16 41 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.35 3.58 8.89 -89.70 -0.80 2.79 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 44 H 0.04 0.60 6.35 -2.39 -0.02 0.59 16 45 H 0.05 1.02 7.39 -2.39 -0.02 1.01 16 46 H 0.05 1.10 6.37 -2.39 -0.02 1.09 16 47 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.10 4.58 6.67 -2.91 -0.02 4.56 16 49 H 0.11 6.14 6.17 -2.91 -0.02 6.12 16 50 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 Total: -1.00 -67.52 374.70 0.43 -67.09 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.56 Total: 36.73 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 4.68 Total: -43.56 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -4.85 Total: -87.35 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.88 Total: -17.25 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -67.52 0.43 -67.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162459155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.640 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds