Wall clock time and date at job start Tue Mar 31 2020 11:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46941 * 2 1 4 4 H 1.09005 * 109.47357 * 305.85897 * 3 2 1 5 5 C 1.53000 * 109.47239 * 65.85715 * 3 2 1 6 6 C 1.50701 * 109.47279 * 185.85744 * 3 2 1 7 7 O 1.21283 * 119.99932 * 253.11295 * 6 3 2 8 8 N 1.34780 * 120.00435 * 73.10816 * 6 3 2 9 9 C 1.46503 * 119.99283 * 3.96673 * 8 6 3 10 10 C 1.53003 * 109.47105 * 93.24271 * 9 8 6 11 11 N 1.46501 * 109.47266 * 179.97438 * 10 9 8 12 12 C 1.36933 * 119.99863 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00490 * 359.97438 * 12 11 10 14 14 C 1.38820 * 119.99744 * 180.02562 * 12 11 10 15 15 N 1.31612 * 120.00076 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99729 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47173 * 60.00146 * 16 14 12 18 18 H 1.48505 * 109.47022 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47673 * 299.99854 * 16 14 12 20 20 C 1.46490 * 120.00351 * 183.96223 * 8 6 3 21 21 C 1.53005 * 109.46641 * 84.56190 * 20 8 6 22 22 C 1.50701 * 109.46896 * 179.97438 * 21 20 8 23 23 C 1.38237 * 120.00518 * 269.72662 * 22 21 20 24 24 C 1.38227 * 120.00106 * 179.76543 * 23 22 21 25 25 C 1.38238 * 120.00198 * 0.50910 * 24 23 22 26 26 C 1.38237 * 119.99730 * 359.74636 * 25 24 23 27 27 C 1.38230 * 119.99915 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47103 * 299.99443 * 1 2 3 29 29 H 1.08997 * 109.47455 * 59.99965 * 1 2 3 30 30 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47103 * 240.00556 * 2 1 3 32 32 H 1.08995 * 109.47757 * 120.00470 * 2 1 3 33 33 H 1.09005 * 109.47089 * 300.00110 * 5 3 2 34 34 H 1.09005 * 109.46797 * 59.99839 * 5 3 2 35 35 H 1.08997 * 109.47585 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47046 * 213.24261 * 9 8 6 37 37 H 1.08999 * 109.47850 * 333.24408 * 9 8 6 38 38 H 1.09000 * 109.47160 * 299.99919 * 10 9 8 39 39 H 1.09004 * 109.47037 * 60.00017 * 10 9 8 40 40 H 0.96996 * 119.99577 * 0.02562 * 11 10 9 41 41 H 0.96994 * 120.00364 * 179.97438 * 15 14 12 42 42 H 1.09000 * 109.47295 * 204.55859 * 20 8 6 43 43 H 1.09000 * 109.47540 * 324.56605 * 20 8 6 44 44 H 1.08993 * 109.47348 * 299.99855 * 21 20 8 45 45 H 1.08999 * 109.47331 * 59.99896 * 21 20 8 46 46 H 1.07996 * 119.99630 * 359.97438 * 23 22 21 47 47 H 1.08001 * 120.00230 * 180.22712 * 24 23 22 48 48 H 1.07995 * 119.99900 * 179.72316 * 25 24 23 49 49 H 1.08001 * 119.99680 * 179.97438 * 26 25 24 50 50 H 1.08006 * 119.99727 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5935 1.9858 -0.8329 5 6 1.6537 2.1200 1.3163 6 6 3.5399 1.4451 -0.1450 7 8 4.2407 1.7168 0.8068 8 7 4.1028 1.1453 -1.3324 9 6 3.2567 0.9021 -2.5034 10 6 3.0812 2.2054 -3.2853 11 7 2.2356 1.9622 -4.4566 12 6 1.9385 2.9895 -5.3119 13 1 2.3273 3.9792 -5.1227 14 6 1.1368 2.7591 -6.4215 15 7 0.6626 1.5531 -6.6517 16 14 0.7311 4.1607 -7.5878 17 1 1.9874 4.7077 -8.1602 18 1 -0.1340 3.6571 -8.6847 19 1 0.0178 5.2313 -6.8460 20 6 5.5605 1.0627 -1.4520 21 6 6.0282 -0.3326 -1.0330 22 6 7.5277 -0.4178 -1.1567 23 6 8.1008 -0.8401 -2.3417 24 6 9.4763 -0.9137 -2.4566 25 6 10.2787 -0.5749 -1.3831 26 6 9.7056 -0.1576 -0.1964 27 6 8.3302 -0.0786 -0.0834 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.5687 2.1182 1.4212 34 1 2.1001 1.5767 2.1492 35 1 2.0173 3.1475 1.3166 36 1 3.7273 0.1553 -3.1429 37 1 2.2816 0.5394 -2.1782 38 1 2.6106 2.9522 -2.6458 39 1 4.0563 2.5681 -3.6106 40 1 1.8861 1.0734 -4.6263 41 1 0.1022 1.3922 -7.4268 42 1 5.8513 1.2480 -2.4860 43 1 6.0211 1.8096 -0.8055 44 1 5.7375 -0.5180 0.0009 45 1 5.5677 -1.0796 -1.6795 46 1 7.4738 -1.1094 -3.1787 47 1 9.9241 -1.2401 -3.3836 48 1 11.3533 -0.6367 -1.4715 49 1 10.3325 0.1066 0.6424 50 1 7.8824 0.2470 0.8440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162702867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:33 Heat of formation + Delta-G solvation = -18.546747 kcal Electronic energy + Delta-G solvation = -26878.626310 eV Core-core repulsion = 23291.309527 eV Total energy + Delta-G solvation = -3587.316784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.26182 -39.28546 -36.34579 -35.62919 -34.51827 -33.13030 -31.22970 -30.99268 -29.69057 -28.90526 -27.41318 -25.52943 -23.86645 -23.52374 -22.67304 -21.88773 -21.23863 -20.70605 -18.69741 -17.40570 -17.02923 -16.85733 -16.05534 -15.36157 -15.32951 -15.20245 -14.88300 -14.43621 -14.05842 -13.75717 -13.61850 -13.54662 -13.26486 -13.22748 -13.11906 -12.94104 -12.66716 -12.50258 -12.23121 -12.03850 -11.75169 -11.47343 -11.34700 -11.32264 -11.19948 -11.13753 -10.94965 -10.83529 -10.80284 -10.71216 -10.51335 -10.18786 -9.80517 -9.49432 -9.03114 -8.95571 -8.93607 -8.41754 -7.01682 -5.82874 -3.12664 1.22617 1.29218 2.76399 3.08783 3.41134 3.45836 3.46720 3.68414 4.48323 4.59436 4.72849 4.74552 4.86584 4.89495 4.90011 5.02727 5.07658 5.24028 5.24931 5.33229 5.41163 5.41689 5.46361 5.53385 5.53740 5.54836 5.62607 5.66199 5.74661 5.83809 5.88698 5.91505 5.97482 5.99479 6.02140 6.06137 6.09268 6.13867 6.30151 6.34095 6.35200 6.39660 6.48200 6.55363 6.65045 6.80252 6.89914 7.52633 7.64958 8.31632 8.35586 9.46877 10.00947 10.36156 11.39627 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.008877 B = 0.003566 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.382469 B = 7850.315772 C =10227.132176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.116 4.116 4 H 0.102 0.898 5 C -0.131 4.131 6 C 0.523 3.477 7 O -0.548 6.548 8 N -0.606 5.606 9 C 0.092 3.908 10 C 0.139 3.861 11 N -0.730 5.730 12 C -0.242 4.242 13 H 0.070 0.930 14 C -0.010 4.010 15 N -0.933 5.933 16 Si 0.908 3.092 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.123 3.877 21 C -0.095 4.095 22 C -0.076 4.076 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.114 4.114 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.909 -6.791 14.267 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.137 4.137 4 H 0.120 0.880 5 C -0.188 4.188 6 C 0.311 3.689 7 O -0.425 6.425 8 N -0.338 5.338 9 C -0.031 4.031 10 C 0.010 3.990 11 N -0.375 5.375 12 C -0.373 4.373 13 H 0.088 0.912 14 C -0.207 4.207 15 N -0.581 5.581 16 Si 0.738 3.262 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.000 4.000 21 C -0.134 4.134 22 C -0.077 4.077 23 C -0.133 4.133 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.132 4.132 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.262 -6.484 14.682 19.607 hybrid contribution -0.285 0.488 -0.992 1.142 sum 10.977 -5.996 13.690 18.544 Atomic orbital electron populations 1.21822 0.94783 1.01919 1.02522 1.21552 0.96864 0.94267 1.02581 1.21422 0.91971 0.98903 1.01442 0.88009 1.21630 1.00912 1.00637 0.95641 1.20730 0.90749 0.75373 0.82000 1.90639 1.64499 1.48653 1.38724 1.47937 1.06570 1.69686 1.09594 1.22051 0.95401 0.99188 0.86473 1.20985 0.94742 0.93957 0.89291 1.42194 1.59034 1.10688 1.25554 1.19146 1.25217 0.90272 1.02658 0.91234 1.24730 1.00421 0.96699 0.98822 1.69633 1.38762 1.19685 1.30001 0.86262 0.77921 0.81396 0.80573 1.21218 1.21622 1.21197 1.21390 0.79890 0.96306 1.02438 1.20971 0.91009 0.98342 1.03035 1.19819 0.95314 0.98641 0.93884 1.21131 0.95047 0.99816 0.97317 1.21151 0.93782 1.00113 0.98715 1.21137 0.99682 1.00155 0.93574 1.21139 0.94953 0.99995 0.97793 1.21126 0.93571 0.99786 0.98704 0.92429 0.91839 0.92532 0.91026 0.91706 0.91895 0.92052 0.92425 0.90254 0.89236 0.96158 0.96054 0.78230 0.93373 0.90018 0.90142 0.90599 0.90711 0.85863 0.86121 0.86344 0.86240 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.68 37.16 0.36 -1.23 16 2 C -0.11 -1.30 4.97 -26.73 -0.13 -1.43 16 3 C -0.12 -1.51 1.86 -91.77 -0.17 -1.68 16 4 H 0.10 1.42 6.95 -51.93 -0.36 1.06 16 5 C -0.13 -1.57 8.35 37.16 0.31 -1.26 16 6 C 0.52 7.82 6.86 -10.98 -0.08 7.75 16 7 O -0.55 -9.51 15.63 5.55 0.09 -9.42 16 8 N -0.61 -8.53 2.48 -173.69 -0.43 -8.97 16 9 C 0.09 1.37 4.91 -4.04 -0.02 1.35 16 10 C 0.14 2.66 6.54 -4.04 -0.03 2.64 16 11 N -0.73 -17.55 5.60 -59.90 -0.34 -17.89 16 12 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 13 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 14 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 15 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 16 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.12 1.61 5.38 -4.04 -0.02 1.58 16 21 C -0.10 -1.10 5.63 -27.88 -0.16 -1.26 16 22 C -0.08 -0.86 5.13 -104.62 -0.54 -1.40 16 23 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 24 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 25 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 27 C -0.11 -1.25 9.70 -39.58 -0.38 -1.64 16 28 H 0.06 0.54 6.59 -51.93 -0.34 0.20 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.82 6.06 -51.93 -0.31 0.51 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.64 6.59 -51.93 -0.34 0.30 16 34 H 0.06 0.75 7.96 -51.93 -0.41 0.34 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.14 8.10 -51.93 -0.42 0.71 16 37 H 0.09 1.28 4.48 -51.93 -0.23 1.04 16 38 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.38 9.54 7.67 -40.82 -0.31 9.22 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 43 H 0.08 1.14 7.54 -51.93 -0.39 0.75 16 44 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 45 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 46 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -30.99 403.03 -10.15 -41.14 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.56 Total: 8.75 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.68 Total: -10.11 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.04 Total: -53.38 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.99 -10.15 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162702867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.596 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds