Wall clock time and date at job start Tue Mar 31 2020 11:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46941 * 2 1 4 4 H 1.09005 * 109.47357 * 305.85897 * 3 2 1 5 5 C 1.53000 * 109.47239 * 65.85715 * 3 2 1 6 6 C 1.50701 * 109.47279 * 185.85744 * 3 2 1 7 7 O 1.21283 * 119.99932 * 253.11295 * 6 3 2 8 8 N 1.34780 * 120.00435 * 73.10816 * 6 3 2 9 9 C 1.46503 * 119.99283 * 3.96673 * 8 6 3 10 10 C 1.53003 * 109.47105 * 93.24271 * 9 8 6 11 11 N 1.46501 * 109.47266 * 179.97438 * 10 9 8 12 12 C 1.36933 * 119.99863 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00490 * 359.97438 * 12 11 10 14 14 C 1.38820 * 119.99744 * 180.02562 * 12 11 10 15 15 N 1.31612 * 120.00076 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99729 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47173 * 60.00146 * 16 14 12 18 18 H 1.48505 * 109.47022 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47673 * 299.99854 * 16 14 12 20 20 C 1.46490 * 120.00351 * 183.96223 * 8 6 3 21 21 C 1.53005 * 109.46641 * 84.56190 * 20 8 6 22 22 C 1.50701 * 109.46896 * 179.97438 * 21 20 8 23 23 C 1.38237 * 120.00518 * 269.72662 * 22 21 20 24 24 C 1.38227 * 120.00106 * 179.76543 * 23 22 21 25 25 C 1.38238 * 120.00198 * 0.50910 * 24 23 22 26 26 C 1.38237 * 119.99730 * 359.74636 * 25 24 23 27 27 C 1.38230 * 119.99915 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47103 * 299.99443 * 1 2 3 29 29 H 1.08997 * 109.47455 * 59.99965 * 1 2 3 30 30 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47103 * 240.00556 * 2 1 3 32 32 H 1.08995 * 109.47757 * 120.00470 * 2 1 3 33 33 H 1.09005 * 109.47089 * 300.00110 * 5 3 2 34 34 H 1.09005 * 109.46797 * 59.99839 * 5 3 2 35 35 H 1.08997 * 109.47585 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47046 * 213.24261 * 9 8 6 37 37 H 1.08999 * 109.47850 * 333.24408 * 9 8 6 38 38 H 1.09000 * 109.47160 * 299.99919 * 10 9 8 39 39 H 1.09004 * 109.47037 * 60.00017 * 10 9 8 40 40 H 0.96996 * 119.99577 * 0.02562 * 11 10 9 41 41 H 0.96994 * 120.00364 * 179.97438 * 15 14 12 42 42 H 1.09000 * 109.47295 * 204.55859 * 20 8 6 43 43 H 1.09000 * 109.47540 * 324.56605 * 20 8 6 44 44 H 1.08993 * 109.47348 * 299.99855 * 21 20 8 45 45 H 1.08999 * 109.47331 * 59.99896 * 21 20 8 46 46 H 1.07996 * 119.99630 * 359.97438 * 23 22 21 47 47 H 1.08001 * 120.00230 * 180.22712 * 24 23 22 48 48 H 1.07995 * 119.99900 * 179.72316 * 25 24 23 49 49 H 1.08001 * 119.99680 * 179.97438 * 26 25 24 50 50 H 1.08006 * 119.99727 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5935 1.9858 -0.8329 5 6 1.6537 2.1200 1.3163 6 6 3.5399 1.4451 -0.1450 7 8 4.2407 1.7168 0.8068 8 7 4.1028 1.1453 -1.3324 9 6 3.2567 0.9021 -2.5034 10 6 3.0812 2.2054 -3.2853 11 7 2.2356 1.9622 -4.4566 12 6 1.9385 2.9895 -5.3119 13 1 2.3273 3.9792 -5.1227 14 6 1.1368 2.7591 -6.4215 15 7 0.6626 1.5531 -6.6517 16 14 0.7311 4.1607 -7.5878 17 1 1.9874 4.7077 -8.1602 18 1 -0.1340 3.6571 -8.6847 19 1 0.0178 5.2313 -6.8460 20 6 5.5605 1.0627 -1.4520 21 6 6.0282 -0.3326 -1.0330 22 6 7.5277 -0.4178 -1.1567 23 6 8.1008 -0.8401 -2.3417 24 6 9.4763 -0.9137 -2.4566 25 6 10.2787 -0.5749 -1.3831 26 6 9.7056 -0.1576 -0.1964 27 6 8.3302 -0.0786 -0.0834 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.5687 2.1182 1.4212 34 1 2.1001 1.5767 2.1492 35 1 2.0173 3.1475 1.3166 36 1 3.7273 0.1553 -3.1429 37 1 2.2816 0.5394 -2.1782 38 1 2.6106 2.9522 -2.6458 39 1 4.0563 2.5681 -3.6106 40 1 1.8861 1.0734 -4.6263 41 1 0.1022 1.3922 -7.4268 42 1 5.8513 1.2480 -2.4860 43 1 6.0211 1.8096 -0.8055 44 1 5.7375 -0.5180 0.0009 45 1 5.5677 -1.0796 -1.6795 46 1 7.4738 -1.1094 -3.1787 47 1 9.9241 -1.2401 -3.3836 48 1 11.3533 -0.6367 -1.4715 49 1 10.3325 0.1066 0.6424 50 1 7.8824 0.2470 0.8440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162702867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:32 Heat of formation + Delta-G solvation = -33.665309 kcal Electronic energy + Delta-G solvation = -26879.281900 eV Core-core repulsion = 23291.309527 eV Total energy + Delta-G solvation = -3587.972374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.43278 -40.10486 -37.70568 -36.68261 -36.13698 -34.27644 -33.02269 -31.76510 -30.63744 -30.07044 -28.86251 -26.50871 -25.67276 -24.50132 -23.49694 -23.40979 -22.18227 -21.71099 -19.99055 -19.09459 -18.31053 -17.75913 -17.22258 -16.75572 -16.30222 -16.17835 -16.13187 -15.70642 -15.36011 -15.22062 -15.01488 -14.79394 -14.47259 -14.32922 -14.07196 -13.93706 -13.75384 -13.44338 -13.18503 -13.14563 -12.97692 -12.85877 -12.73375 -12.69089 -12.43482 -12.38458 -12.17641 -12.13941 -11.95573 -11.84267 -11.75215 -11.69184 -11.50375 -10.94992 -10.68117 -9.95886 -9.81854 -9.47676 -9.02706 -7.95287 -5.24664 0.42552 0.50399 1.49156 1.50963 1.55558 1.57491 1.91642 2.57382 2.88347 3.38216 3.40025 3.83970 3.85729 3.89972 3.92598 4.03829 4.09414 4.14871 4.18069 4.23353 4.31013 4.36699 4.40691 4.44218 4.52517 4.56421 4.60366 4.61637 4.65203 4.74218 4.87564 4.92054 4.98218 5.03006 5.05280 5.07946 5.12110 5.18240 5.18685 5.21753 5.33236 5.47425 5.48596 5.53288 5.59985 5.63100 5.72758 6.13046 6.25487 6.32930 7.11365 7.34263 8.04997 8.31267 9.27144 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.008877 B = 0.003566 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.382469 B = 7850.315772 C =10227.132176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.114 4.114 4 H 0.092 0.908 5 C -0.127 4.127 6 C 0.519 3.481 7 O -0.573 6.573 8 N -0.602 5.602 9 C 0.108 3.892 10 C 0.143 3.857 11 N -0.737 5.737 12 C -0.249 4.249 13 H 0.070 0.930 14 C -0.065 4.065 15 N -0.962 5.962 16 Si 0.969 3.031 17 H -0.280 1.280 18 H -0.293 1.293 19 H -0.279 1.279 20 C 0.124 3.876 21 C -0.082 4.082 22 C -0.090 4.090 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.129 4.129 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.379 0.621 41 H 0.253 0.747 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.129 0.871 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.139 0.861 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.506 -7.063 14.403 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.136 4.136 4 H 0.111 0.889 5 C -0.185 4.185 6 C 0.309 3.691 7 O -0.453 6.453 8 N -0.333 5.333 9 C -0.016 4.016 10 C 0.015 3.985 11 N -0.381 5.381 12 C -0.381 4.381 13 H 0.088 0.912 14 C -0.258 4.258 15 N -0.612 5.612 16 Si 0.797 3.203 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.205 1.205 20 C 0.001 3.999 21 C -0.120 4.120 22 C -0.091 4.091 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.147 4.147 26 C -0.144 4.144 27 C -0.147 4.147 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.212 0.788 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.147 0.853 47 H 0.158 0.842 48 H 0.161 0.839 49 H 0.157 0.843 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.883 -6.745 14.839 20.172 hybrid contribution -0.379 0.599 -0.980 1.210 sum 11.503 -6.145 13.859 19.031 Atomic orbital electron populations 1.21802 0.93851 1.02689 1.02395 1.21534 0.97568 0.92912 1.02794 1.21455 0.90384 1.00138 1.01586 0.88949 1.21616 1.02156 0.99733 0.94945 1.21133 0.91566 0.74671 0.81723 1.90626 1.65277 1.49855 1.39539 1.47934 1.06946 1.69282 1.09121 1.21834 0.96312 0.97047 0.86359 1.21037 0.93312 0.96067 0.88080 1.42295 1.59548 1.09833 1.26460 1.19482 1.24591 0.91000 1.03050 0.91207 1.25467 1.00925 0.98905 1.00536 1.69766 1.39651 1.21355 1.30460 0.85296 0.77658 0.78816 0.78482 1.20614 1.21915 1.20541 1.21424 0.79191 0.97040 1.02249 1.20800 0.91569 0.97292 1.02338 1.19842 0.95003 0.99731 0.94532 1.21301 0.95846 1.00075 0.97276 1.21460 0.93513 0.99676 0.99748 1.21484 1.01034 0.99128 0.93102 1.21424 0.94657 0.99534 0.98789 1.21248 0.94409 1.00416 0.98664 0.91373 0.93111 0.91358 0.91200 0.91081 0.89887 0.92276 0.93551 0.89118 0.88241 0.96727 0.96590 0.78839 0.93813 0.89770 0.91517 0.91705 0.90006 0.85260 0.84201 0.83908 0.84319 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.68 71.98 0.70 -2.17 16 2 C -0.11 -2.35 4.97 30.59 0.15 -2.20 16 3 C -0.11 -2.90 1.86 -11.54 -0.02 -2.92 16 4 H 0.09 2.53 6.95 -2.38 -0.02 2.52 16 5 C -0.13 -2.95 8.35 71.98 0.60 -2.35 16 6 C 0.52 15.46 6.86 87.66 0.60 16.07 16 7 O -0.57 -20.07 15.63 -3.04 -0.05 -20.12 16 8 N -0.60 -16.78 2.48 -821.81 -2.04 -18.82 16 9 C 0.11 3.13 4.91 86.38 0.42 3.56 16 10 C 0.14 5.44 6.54 86.38 0.57 6.01 16 11 N -0.74 -35.37 5.60 -343.44 -1.92 -37.29 16 12 C -0.25 -13.53 9.99 84.04 0.84 -12.69 16 13 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 14 C -0.07 -3.62 5.50 84.87 0.47 -3.16 16 15 N -0.96 -56.32 13.06 21.65 0.28 -56.04 16 16 Si 0.97 44.92 29.55 68.60 2.03 46.94 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C 0.12 3.24 5.38 86.38 0.47 3.70 16 21 C -0.08 -1.88 5.63 29.85 0.17 -1.71 16 22 C -0.09 -2.03 5.13 -19.86 -0.10 -2.13 16 23 C -0.13 -2.63 9.70 22.27 0.22 -2.41 16 24 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 25 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 26 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 27 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 28 H 0.07 1.15 6.59 -2.39 -0.02 1.13 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.51 6.06 -2.39 -0.01 1.49 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.57 6.59 -2.38 -0.02 1.55 16 34 H 0.06 1.40 7.96 -2.38 -0.02 1.38 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 37 H 0.10 2.75 4.48 -2.39 -0.01 2.74 16 38 H 0.01 0.59 7.74 -2.39 -0.02 0.57 16 39 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.38 18.82 7.67 -92.71 -0.71 18.10 16 41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.08 2.15 8.03 -2.39 -0.02 2.13 16 43 H 0.07 1.94 7.54 -2.39 -0.02 1.92 16 44 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 45 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 46 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 47 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 48 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 50 H 0.12 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -65.17 403.03 4.45 -60.72 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 0.20 Total: 35.78 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.96 Total: -11.16 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -3.68 Total: -112.16 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.17 4.45 -60.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162702867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.054 kcal (2) G-P(sol) polarization free energy of solvation -65.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds