Wall clock time and date at job start Tue Mar 31 2020 12:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46792 * 2 1 4 4 H 1.08997 * 109.47675 * 304.74330 * 3 2 1 5 5 C 1.50707 * 109.47087 * 184.74358 * 3 2 1 6 6 H 1.08001 * 120.00035 * 244.52677 * 5 3 2 7 7 C 1.37875 * 120.00073 * 64.52815 * 5 3 2 8 8 N 1.31507 * 120.00285 * 194.06887 * 7 5 3 9 9 Si 1.86804 * 119.99725 * 14.06206 * 7 5 3 10 10 H 1.48504 * 109.46900 * 94.59659 * 9 7 5 11 11 H 1.48497 * 109.47070 * 214.58880 * 9 7 5 12 12 H 1.48498 * 109.47537 * 334.59717 * 9 7 5 13 13 N 1.46500 * 109.47304 * 64.74613 * 3 2 1 14 14 C 1.34776 * 119.99970 * 268.16899 * 13 3 2 15 15 O 1.21588 * 119.99913 * 4.68705 * 14 13 3 16 16 N 1.34775 * 119.99958 * 184.69572 * 14 13 3 17 17 C 1.39952 * 119.99864 * 184.32711 * 16 14 13 18 18 C 1.38889 * 120.07090 * 52.71701 * 17 16 14 19 19 C 1.50697 * 120.03515 * 0.02562 * 18 17 16 20 20 C 1.38092 * 119.92622 * 180.02562 * 18 17 16 21 21 C 1.38294 * 120.07107 * 359.97438 * 20 18 17 22 22 C 1.38262 * 120.14643 * 0.02562 * 21 20 18 23 23 C 1.38138 * 120.06415 * 0.26989 * 22 21 20 24 24 C 1.50698 * 120.03492 * 179.72836 * 23 22 21 25 25 C 1.53002 * 109.46924 * 354.02318 * 24 23 22 26 26 C 1.52996 * 109.47187 * 114.01986 * 24 23 22 27 27 C 1.53006 * 109.47114 * 234.02375 * 24 23 22 28 28 H 1.08996 * 109.47039 * 173.63760 * 1 2 3 29 29 H 1.09002 * 109.46989 * 293.63489 * 1 2 3 30 30 H 1.08996 * 109.47807 * 53.63348 * 1 2 3 31 31 H 1.08997 * 109.46740 * 240.00781 * 2 1 3 32 32 H 1.08999 * 109.47174 * 120.00048 * 2 1 3 33 33 H 0.97003 * 120.00623 * 179.97438 * 8 7 5 34 34 H 0.96998 * 119.99899 * 88.16777 * 13 3 2 35 35 H 0.96994 * 120.00194 * 4.32089 * 16 14 13 36 36 H 1.08999 * 109.47101 * 263.47163 * 19 18 17 37 37 H 1.09003 * 109.47173 * 23.46780 * 19 18 17 38 38 H 1.08998 * 109.47176 * 143.47309 * 19 18 17 39 39 H 1.07998 * 119.95826 * 179.97438 * 20 18 17 40 40 H 1.08006 * 119.93083 * 179.97438 * 21 20 18 41 41 H 1.07992 * 119.97118 * 180.02562 * 22 21 20 42 42 H 1.08993 * 109.47643 * 60.00084 * 25 24 23 43 43 H 1.09002 * 109.47230 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47266 * 299.99532 * 25 24 23 45 45 H 1.09006 * 109.47029 * 54.79462 * 26 24 23 46 46 H 1.09004 * 109.47309 * 174.78921 * 26 24 23 47 47 H 1.09001 * 109.47254 * 294.79617 * 26 24 23 48 48 H 1.08996 * 109.47288 * 59.99885 * 27 24 23 49 49 H 1.08998 * 109.46801 * 180.02562 * 27 24 23 50 50 H 1.08996 * 109.46868 * 299.99497 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6089 1.9803 -0.8444 5 6 3.5424 1.4442 -0.1175 6 1 4.1470 1.8236 0.6930 7 6 4.1451 0.9614 -1.2597 8 7 5.4345 0.7028 -1.2637 9 14 3.1300 0.6744 -2.8014 10 1 3.2136 1.8697 -3.6786 11 1 3.6560 -0.5097 -3.5270 12 1 1.7138 0.4351 -2.4243 13 7 1.6471 2.0993 1.2492 14 6 0.4884 2.7845 1.3149 15 8 -0.2712 2.7867 0.3654 16 7 0.1717 3.4673 2.4328 17 6 -1.0705 4.1037 2.5358 18 6 -2.2391 3.3914 2.2992 19 6 -2.1713 1.9315 1.9317 20 6 -3.4632 4.0224 2.4012 21 6 -3.5263 5.3619 2.7390 22 6 -2.3648 6.0739 2.9751 23 6 -1.1370 5.4500 2.8688 24 6 0.1288 6.2282 3.1204 25 6 -0.2130 7.7053 3.3261 26 6 0.8206 5.6857 4.3725 27 6 1.0638 6.0838 1.9179 28 1 -0.3633 -1.0213 -0.1139 29 1 -0.3633 0.4120 0.9415 30 1 -0.3634 0.6093 -0.8274 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8585 0.3627 -2.0672 34 1 2.2210 2.0411 2.0290 35 1 0.8046 3.5177 3.1661 36 1 -2.2244 1.8268 0.8480 37 1 -1.2331 1.5093 2.2918 38 1 -3.0072 1.4024 2.3892 39 1 -4.3722 3.4691 2.2169 40 1 -4.4849 5.8533 2.8177 41 1 -2.4174 7.1197 3.2391 42 1 -0.8791 7.8083 4.1827 43 1 0.7025 8.2683 3.5076 44 1 -0.7059 8.0919 2.4340 45 1 0.9810 4.6131 4.2632 46 1 1.7808 6.1852 4.5024 47 1 0.1931 5.8723 5.2441 48 1 0.5709 6.4703 1.0259 49 1 1.9795 6.6462 2.1001 50 1 1.3074 5.0315 1.7715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184636121.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:55 Heat of formation + Delta-G solvation = -5.641433 kcal Electronic energy + Delta-G solvation = -28770.505718 eV Core-core repulsion = 25183.748551 eV Total energy + Delta-G solvation = -3586.757167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93801 -38.87922 -36.59481 -35.65009 -34.15977 -32.45187 -31.94955 -31.09463 -29.11430 -28.02218 -27.30045 -27.21224 -26.13377 -23.03379 -22.51351 -22.00928 -20.47841 -19.79911 -19.08007 -18.23972 -17.27717 -16.38797 -15.92777 -15.63297 -15.15685 -14.51234 -14.38366 -14.31673 -14.06164 -13.80863 -13.61517 -13.36712 -13.10717 -12.90636 -12.64861 -12.45377 -12.29251 -11.92730 -11.85294 -11.81504 -11.74644 -11.65698 -11.58821 -11.31521 -10.95099 -10.93002 -10.86182 -10.74792 -10.63631 -10.54460 -9.94330 -9.65659 -9.51730 -9.36569 -9.26011 -8.53685 -8.46613 -8.20335 -7.83187 -6.22007 -4.20028 1.42256 1.49799 3.18031 3.27240 3.36887 3.44157 3.68615 3.91858 4.35311 4.55062 4.68563 4.83673 4.93806 5.04994 5.08029 5.11839 5.21843 5.37989 5.49827 5.53338 5.55464 5.63795 5.68457 5.81453 5.87625 5.89404 5.95588 5.97302 6.01501 6.09198 6.10961 6.14902 6.20325 6.26198 6.42538 6.46826 6.55997 6.57615 6.64972 6.74233 6.79034 6.81321 6.94541 7.00540 7.18421 7.26234 7.39513 7.54931 7.59777 8.29860 8.67488 8.81039 9.19700 9.43121 10.90085 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.004328 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.392756 B = 6468.411739 C = 7479.411945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.263 3.737 4 H 0.048 0.952 5 C -0.539 4.539 6 H 0.077 0.923 7 C 0.084 3.916 8 N -0.887 5.887 9 Si 0.860 3.140 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.246 1.246 13 N -0.716 5.716 14 C 0.695 3.305 15 O -0.577 6.577 16 N -0.699 5.699 17 C 0.176 3.824 18 C -0.072 4.072 19 C -0.106 4.106 20 C -0.116 4.116 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.084 4.084 24 C -0.024 4.024 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.149 4.149 28 H 0.029 0.971 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.266 0.734 34 H 0.389 0.611 35 H 0.399 0.601 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.003 9.144 11.912 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.159 3.841 4 H 0.065 0.935 5 C -0.577 4.577 6 H 0.095 0.905 7 C -0.120 4.120 8 N -0.524 5.524 9 Si 0.686 3.314 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.170 1.170 13 N -0.368 5.368 14 C 0.397 3.603 15 O -0.454 6.454 16 N -0.354 5.354 17 C 0.082 3.918 18 C -0.074 4.074 19 C -0.163 4.163 20 C -0.135 4.135 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.087 4.087 24 C -0.024 4.024 25 C -0.198 4.198 26 C -0.196 4.196 27 C -0.207 4.207 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.222 0.778 35 H 0.239 0.761 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.434 8.993 10.866 20.181 hybrid contribution 0.256 -0.175 -0.230 0.386 sum -14.177 8.818 10.637 19.796 Atomic orbital electron populations 1.21908 0.97478 0.99027 1.01909 1.22281 0.93881 0.99778 1.01235 1.18960 0.95066 0.88318 0.81751 0.93463 1.21029 0.88754 1.43608 1.04266 0.90477 1.24765 0.94783 0.93897 0.98585 1.69935 1.10563 1.43052 1.28818 0.87240 0.82431 0.78095 0.83614 1.20490 1.21144 1.16976 1.45422 1.20327 1.54379 1.16655 1.16028 0.82947 0.78909 0.82460 1.90895 1.50799 1.67374 1.36326 1.43137 1.17196 1.55841 1.19210 1.16998 0.84345 0.89938 1.00567 1.19901 0.91849 0.96595 0.99056 1.20912 1.01334 0.90971 1.03061 1.20837 0.96711 0.94877 1.01067 1.21015 0.98029 0.94444 1.01288 1.20917 0.91356 0.99867 1.01590 1.19787 0.94928 0.91726 1.02217 1.19419 0.92482 0.94497 0.96053 1.21940 1.01475 0.94745 1.01623 1.21952 1.00467 1.00466 0.96735 1.22044 0.98138 1.03858 0.96619 0.95158 0.93212 0.92724 0.92124 0.92891 0.92400 0.77814 0.76101 0.89424 0.91973 0.92908 0.86261 0.86421 0.85727 0.92420 0.92420 0.92319 0.92971 0.91903 0.92368 0.92743 0.92677 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.51 37.16 0.32 -2.52 16 2 C -0.13 -2.86 4.86 -26.73 -0.13 -2.99 16 3 C 0.26 6.04 1.76 -69.08 -0.12 5.92 16 4 H 0.05 1.21 6.11 -51.93 -0.32 0.89 16 5 C -0.54 -14.23 9.19 -34.44 -0.32 -14.55 16 6 H 0.08 2.16 8.03 -52.49 -0.42 1.73 16 7 C 0.08 2.31 5.35 -17.82 -0.10 2.21 16 8 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 9 Si 0.86 20.94 25.75 -169.99 -4.38 16.57 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.25 -5.78 5.41 56.52 0.31 -5.47 16 13 N -0.72 -13.71 4.88 -59.81 -0.29 -14.00 16 14 C 0.70 12.74 4.72 -86.92 -0.41 12.33 16 15 O -0.58 -12.33 11.05 5.29 0.06 -12.27 16 16 N -0.70 -10.26 2.52 -14.22 -0.04 -10.29 16 17 C 0.18 2.57 5.45 -83.68 -0.46 2.12 16 18 C -0.07 -1.05 5.49 -104.44 -0.57 -1.62 16 19 C -0.11 -1.58 7.46 36.00 0.27 -1.31 16 20 C -0.12 -1.47 9.72 -39.61 -0.39 -1.85 16 21 C -0.13 -1.46 10.04 -39.55 -0.40 -1.86 16 22 C -0.12 -1.37 8.99 -39.61 -0.36 -1.72 16 23 C -0.08 -1.08 4.76 -104.43 -0.50 -1.58 16 24 C -0.02 -0.27 0.75 -155.66 -0.12 -0.39 16 25 C -0.14 -1.30 7.15 37.16 0.27 -1.03 16 26 C -0.14 -1.34 8.34 37.16 0.31 -1.03 16 27 C -0.15 -1.99 8.19 37.16 0.30 -1.69 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.92 4.46 -51.93 -0.23 0.69 16 30 H 0.05 1.15 7.63 -51.93 -0.40 0.75 16 31 H 0.06 1.37 4.84 -51.93 -0.25 1.12 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.39 6.61 8.67 -40.82 -0.35 6.25 16 35 H 0.40 4.94 5.74 -40.82 -0.23 4.70 16 36 H 0.09 1.50 7.00 -51.93 -0.36 1.13 16 37 H 0.06 0.98 5.04 -51.93 -0.26 0.72 16 38 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.12 1.16 5.91 -52.49 -0.31 0.85 16 42 H 0.06 0.46 7.23 -51.93 -0.38 0.09 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 45 H 0.05 0.51 5.01 -51.93 -0.26 0.25 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 1.12 4.75 -51.93 -0.25 0.87 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -30.46 366.29 -8.63 -39.08 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.89 Total: 12.11 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -2.39 Total: -11.56 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.45 Total: -49.45 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.06 Total: -12.27 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.38 Total: 16.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.46 -8.63 -39.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184636121.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.443 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds