Wall clock time and date at job start Tue Mar 31 2020 12:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46792 * 2 1 4 4 H 1.08997 * 109.47675 * 304.74330 * 3 2 1 5 5 C 1.50707 * 109.47087 * 184.74358 * 3 2 1 6 6 H 1.08001 * 120.00035 * 244.52677 * 5 3 2 7 7 C 1.37875 * 120.00073 * 64.52815 * 5 3 2 8 8 N 1.31507 * 120.00285 * 194.06887 * 7 5 3 9 9 Si 1.86804 * 119.99725 * 14.06206 * 7 5 3 10 10 H 1.48504 * 109.46900 * 94.59659 * 9 7 5 11 11 H 1.48497 * 109.47070 * 214.58880 * 9 7 5 12 12 H 1.48498 * 109.47537 * 334.59717 * 9 7 5 13 13 N 1.46500 * 109.47304 * 64.74613 * 3 2 1 14 14 C 1.34776 * 119.99970 * 268.16899 * 13 3 2 15 15 O 1.21588 * 119.99913 * 4.68705 * 14 13 3 16 16 N 1.34775 * 119.99958 * 184.69572 * 14 13 3 17 17 C 1.39952 * 119.99864 * 184.32711 * 16 14 13 18 18 C 1.38889 * 120.07090 * 52.71701 * 17 16 14 19 19 C 1.50697 * 120.03515 * 0.02562 * 18 17 16 20 20 C 1.38092 * 119.92622 * 180.02562 * 18 17 16 21 21 C 1.38294 * 120.07107 * 359.97438 * 20 18 17 22 22 C 1.38262 * 120.14643 * 0.02562 * 21 20 18 23 23 C 1.38138 * 120.06415 * 0.26989 * 22 21 20 24 24 C 1.50698 * 120.03492 * 179.72836 * 23 22 21 25 25 C 1.53002 * 109.46924 * 354.02318 * 24 23 22 26 26 C 1.52996 * 109.47187 * 114.01986 * 24 23 22 27 27 C 1.53006 * 109.47114 * 234.02375 * 24 23 22 28 28 H 1.08996 * 109.47039 * 173.63760 * 1 2 3 29 29 H 1.09002 * 109.46989 * 293.63489 * 1 2 3 30 30 H 1.08996 * 109.47807 * 53.63348 * 1 2 3 31 31 H 1.08997 * 109.46740 * 240.00781 * 2 1 3 32 32 H 1.08999 * 109.47174 * 120.00048 * 2 1 3 33 33 H 0.97003 * 120.00623 * 179.97438 * 8 7 5 34 34 H 0.96998 * 119.99899 * 88.16777 * 13 3 2 35 35 H 0.96994 * 120.00194 * 4.32089 * 16 14 13 36 36 H 1.08999 * 109.47101 * 263.47163 * 19 18 17 37 37 H 1.09003 * 109.47173 * 23.46780 * 19 18 17 38 38 H 1.08998 * 109.47176 * 143.47309 * 19 18 17 39 39 H 1.07998 * 119.95826 * 179.97438 * 20 18 17 40 40 H 1.08006 * 119.93083 * 179.97438 * 21 20 18 41 41 H 1.07992 * 119.97118 * 180.02562 * 22 21 20 42 42 H 1.08993 * 109.47643 * 60.00084 * 25 24 23 43 43 H 1.09002 * 109.47230 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47266 * 299.99532 * 25 24 23 45 45 H 1.09006 * 109.47029 * 54.79462 * 26 24 23 46 46 H 1.09004 * 109.47309 * 174.78921 * 26 24 23 47 47 H 1.09001 * 109.47254 * 294.79617 * 26 24 23 48 48 H 1.08996 * 109.47288 * 59.99885 * 27 24 23 49 49 H 1.08998 * 109.46801 * 180.02562 * 27 24 23 50 50 H 1.08996 * 109.46868 * 299.99497 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6089 1.9803 -0.8444 5 6 3.5424 1.4442 -0.1175 6 1 4.1470 1.8236 0.6930 7 6 4.1451 0.9614 -1.2597 8 7 5.4345 0.7028 -1.2637 9 14 3.1300 0.6744 -2.8014 10 1 3.2136 1.8697 -3.6786 11 1 3.6560 -0.5097 -3.5270 12 1 1.7138 0.4351 -2.4243 13 7 1.6471 2.0993 1.2492 14 6 0.4884 2.7845 1.3149 15 8 -0.2712 2.7867 0.3654 16 7 0.1717 3.4673 2.4328 17 6 -1.0705 4.1037 2.5358 18 6 -2.2391 3.3914 2.2992 19 6 -2.1713 1.9315 1.9317 20 6 -3.4632 4.0224 2.4012 21 6 -3.5263 5.3619 2.7390 22 6 -2.3648 6.0739 2.9751 23 6 -1.1370 5.4500 2.8688 24 6 0.1288 6.2282 3.1204 25 6 -0.2130 7.7053 3.3261 26 6 0.8206 5.6857 4.3725 27 6 1.0638 6.0838 1.9179 28 1 -0.3633 -1.0213 -0.1139 29 1 -0.3633 0.4120 0.9415 30 1 -0.3634 0.6093 -0.8274 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8585 0.3627 -2.0672 34 1 2.2210 2.0411 2.0290 35 1 0.8046 3.5177 3.1661 36 1 -2.2244 1.8268 0.8480 37 1 -1.2331 1.5093 2.2918 38 1 -3.0072 1.4024 2.3892 39 1 -4.3722 3.4691 2.2169 40 1 -4.4849 5.8533 2.8177 41 1 -2.4174 7.1197 3.2391 42 1 -0.8791 7.8083 4.1827 43 1 0.7025 8.2683 3.5076 44 1 -0.7059 8.0919 2.4340 45 1 0.9810 4.6131 4.2632 46 1 1.7808 6.1852 4.5024 47 1 0.1931 5.8723 5.2441 48 1 0.5709 6.4703 1.0259 49 1 1.9795 6.6462 2.1001 50 1 1.3074 5.0315 1.7715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184636121.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:55 Heat of formation + Delta-G solvation = -23.197760 kcal Electronic energy + Delta-G solvation = -28771.267018 eV Core-core repulsion = 25183.748551 eV Total energy + Delta-G solvation = -3587.518467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.10840 -40.17853 -37.54058 -37.25422 -35.51162 -34.37838 -33.37895 -32.38944 -30.25611 -29.35666 -28.56691 -28.18770 -27.16331 -24.69360 -23.75933 -23.24336 -21.74292 -21.43712 -20.27586 -19.59096 -18.50698 -18.17340 -17.31337 -16.87912 -16.43965 -16.04307 -15.78490 -15.24348 -15.21255 -15.01991 -14.87007 -14.75381 -14.43577 -14.21694 -14.17999 -13.67654 -13.64845 -13.34987 -13.27325 -12.94796 -12.86269 -12.71491 -12.65439 -12.62413 -12.55606 -12.39438 -12.07986 -11.83406 -11.82635 -11.70334 -11.54515 -11.35087 -11.32752 -11.02853 -10.66625 -10.55341 -9.77147 -9.43313 -9.00902 -8.37323 -6.37606 0.43636 0.51718 1.30117 1.37275 1.48105 1.85976 2.30145 2.30571 2.88046 2.99168 3.42182 3.65571 3.84455 4.06751 4.11432 4.19683 4.35329 4.35770 4.41438 4.45608 4.54562 4.59146 4.61581 4.68782 4.75031 4.80889 4.84397 4.87634 4.90881 4.99350 5.03494 5.06432 5.11246 5.14459 5.24760 5.25296 5.30446 5.34786 5.39841 5.41304 5.45328 5.55841 5.58548 5.65084 5.71359 5.76427 5.79705 6.03042 6.23735 6.33995 6.63529 7.19786 7.28723 7.76173 8.77995 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.004328 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.392756 B = 6468.411739 C = 7479.411945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C 0.273 3.727 4 H 0.023 0.977 5 C -0.535 4.535 6 H 0.053 0.947 7 C 0.038 3.962 8 N -0.929 5.929 9 Si 0.912 3.088 10 H -0.283 1.283 11 H -0.278 1.278 12 H -0.235 1.235 13 N -0.717 5.717 14 C 0.701 3.299 15 O -0.607 6.607 16 N -0.682 5.682 17 C 0.148 3.852 18 C -0.096 4.096 19 C -0.098 4.098 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.090 4.090 24 C -0.023 4.023 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.148 4.148 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.269 0.731 34 H 0.399 0.601 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.333 10.335 13.335 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.169 4.169 3 C 0.168 3.832 4 H 0.041 0.959 5 C -0.574 4.574 6 H 0.071 0.929 7 C -0.163 4.163 8 N -0.567 5.567 9 Si 0.737 3.263 10 H -0.210 1.210 11 H -0.204 1.204 12 H -0.158 1.158 13 N -0.370 5.370 14 C 0.402 3.598 15 O -0.486 6.486 16 N -0.336 5.336 17 C 0.054 3.946 18 C -0.098 4.098 19 C -0.154 4.154 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.092 4.092 24 C -0.023 4.023 25 C -0.195 4.195 26 C -0.195 4.195 27 C -0.205 4.205 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.233 0.767 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.083 0.917 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.781 10.205 12.344 23.197 hybrid contribution 0.952 -0.439 -0.585 1.200 sum -15.829 9.765 11.759 22.004 Atomic orbital electron populations 1.21773 0.95626 1.00164 1.01564 1.22184 0.95429 0.98307 1.01022 1.18583 0.92597 0.89385 0.82621 0.95897 1.21264 0.90507 1.42247 1.03337 0.92912 1.25427 0.95561 0.94075 1.01213 1.70030 1.12127 1.44836 1.29718 0.86397 0.81736 0.77876 0.80289 1.20977 1.20384 1.15816 1.45134 1.21132 1.54852 1.15863 1.15995 0.82116 0.78714 0.82982 1.90875 1.51596 1.68376 1.37773 1.42853 1.17750 1.54765 1.18263 1.17279 0.83906 0.90966 1.02435 1.20074 0.92889 0.96577 1.00269 1.20765 1.01423 0.91906 1.01353 1.21114 0.96550 0.95781 1.00733 1.21415 0.99429 0.93891 0.99443 1.21285 0.90797 1.01073 1.00573 1.20027 0.96292 0.91091 1.01795 1.19439 0.91417 0.95922 0.95488 1.21922 1.02348 0.92992 1.02213 1.21949 1.01067 1.00051 0.96404 1.22019 0.99102 1.02249 0.97153 0.92782 0.92543 0.94540 0.93210 0.92200 0.92218 0.76665 0.74898 0.92026 0.93404 0.90818 0.84530 0.83296 0.83158 0.90624 0.91560 0.92635 0.93609 0.91007 0.91011 0.94606 0.91681 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.51 71.98 0.61 -4.51 16 2 C -0.13 -5.58 4.86 30.59 0.15 -5.43 16 3 C 0.27 12.75 1.76 44.25 0.08 12.83 16 4 H 0.02 1.20 6.11 -2.39 -0.01 1.19 16 5 C -0.54 -28.97 9.19 25.60 0.24 -28.74 16 6 H 0.05 3.05 8.03 -2.91 -0.02 3.03 16 7 C 0.04 2.11 5.35 84.66 0.45 2.56 16 8 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 9 Si 0.91 43.83 25.75 68.60 1.77 45.60 16 10 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.24 -10.79 5.41 99.48 0.54 -10.25 16 13 N -0.72 -27.93 4.88 -461.41 -2.25 -30.19 16 14 C 0.70 26.04 4.72 179.05 0.84 26.89 16 15 O -0.61 -26.46 11.05 -3.99 -0.04 -26.50 16 16 N -0.68 -20.00 2.52 -317.17 -0.80 -20.80 16 17 C 0.15 4.21 5.45 38.15 0.21 4.42 16 18 C -0.10 -2.72 5.49 -19.74 -0.11 -2.83 16 19 C -0.10 -2.88 7.46 71.23 0.53 -2.35 16 20 C -0.12 -2.84 9.72 22.25 0.22 -2.62 16 21 C -0.12 -2.38 10.04 22.29 0.22 -2.16 16 22 C -0.12 -2.37 8.99 22.25 0.20 -2.17 16 23 C -0.09 -2.14 4.76 -19.74 -0.09 -2.23 16 24 C -0.02 -0.46 0.75 -52.93 -0.04 -0.50 16 25 C -0.14 -2.14 7.15 71.98 0.51 -1.62 16 26 C -0.14 -2.37 8.34 71.98 0.60 -1.77 16 27 C -0.15 -3.90 8.19 71.98 0.59 -3.31 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.06 4.46 -2.39 -0.01 2.05 16 30 H 0.04 1.51 7.63 -2.39 -0.02 1.49 16 31 H 0.05 2.22 4.84 -2.39 -0.01 2.21 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.40 13.80 8.67 -92.71 -0.80 12.99 16 35 H 0.41 10.07 5.74 -92.71 -0.53 9.54 16 36 H 0.06 2.13 7.00 -2.39 -0.02 2.11 16 37 H 0.05 1.50 5.04 -2.39 -0.01 1.49 16 38 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 39 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.15 2.17 5.91 -2.91 -0.02 2.16 16 42 H 0.07 0.92 7.23 -2.39 -0.02 0.90 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 0.90 7.79 -2.39 -0.02 0.88 16 45 H 0.05 0.83 5.01 -2.38 -0.01 0.82 16 46 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.05 1.54 4.75 -2.39 -0.01 1.53 16 Total: -1.00 -67.10 366.29 3.64 -63.46 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -0.54 Total: 37.11 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 5.21 Total: -13.54 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -2.75 Total: -106.13 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.04 Total: -26.50 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.77 Total: 45.60 kcal Total: -67.10 3.64 -63.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184636121.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.260 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds