Wall clock time and date at job start Tue Mar 31 2020 12:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46615 * 2 1 4 4 N 1.46507 * 109.46655 * 179.97438 * 3 2 1 5 5 C 1.46499 * 120.00357 * 270.00235 * 4 3 2 6 6 C 1.50702 * 109.46939 * 270.00245 * 5 4 3 7 7 H 1.08001 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00254 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 119.99852 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47365 * 89.99916 * 10 8 6 12 12 H 1.48496 * 109.47182 * 209.99589 * 10 8 6 13 13 H 1.48500 * 109.47414 * 329.99929 * 10 8 6 14 14 C 1.34776 * 119.99501 * 90.00029 * 4 3 2 15 15 O 1.21586 * 119.99951 * 179.97438 * 14 4 3 16 16 N 1.34774 * 120.00425 * 0.02562 * 14 4 3 17 17 C 1.39942 * 120.00032 * 185.29471 * 16 14 4 18 18 C 1.38870 * 120.07140 * 33.43626 * 17 16 14 19 19 C 1.38113 * 119.92620 * 180.21162 * 18 17 16 20 20 C 1.38281 * 120.07292 * 359.50764 * 19 18 17 21 21 C 1.50695 * 119.92987 * 180.27776 * 20 19 18 22 22 C 1.53008 * 109.47110 * 60.00457 * 21 20 19 23 23 C 1.52996 * 109.47208 * 179.97438 * 21 20 19 24 24 C 1.52997 * 109.47244 * 300.00206 * 21 20 19 25 25 C 1.38279 * 120.13753 * 0.25718 * 20 19 18 26 26 C 1.38117 * 120.07345 * 359.97438 * 25 20 19 27 27 H 1.09007 * 109.46907 * 60.00464 * 1 2 3 28 28 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47854 * 299.99893 * 1 2 3 30 30 H 1.08993 * 109.47357 * 240.00107 * 2 1 3 31 31 H 1.09007 * 109.46907 * 119.99536 * 2 1 3 32 32 H 1.09001 * 109.47052 * 60.00254 * 3 2 1 33 33 H 1.08996 * 109.47539 * 299.99258 * 3 2 1 34 34 H 1.09001 * 109.46816 * 29.99800 * 5 4 3 35 35 H 1.08996 * 109.47374 * 150.00328 * 5 4 3 36 36 H 0.96995 * 120.00511 * 180.02562 * 9 8 6 37 37 H 0.97004 * 120.00014 * 5.29145 * 16 14 4 38 38 H 1.08000 * 120.03160 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.96187 * 179.79140 * 19 18 17 40 40 H 1.08996 * 109.47138 * 59.99800 * 22 21 20 41 41 H 1.08999 * 109.46747 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.46643 * 299.99602 * 22 21 20 43 43 H 1.09001 * 109.47123 * 60.00250 * 23 21 20 44 44 H 1.09008 * 109.47449 * 179.97438 * 23 21 20 45 45 H 1.08996 * 109.47299 * 300.00359 * 23 21 20 46 46 H 1.09003 * 109.47121 * 60.00165 * 24 21 20 47 47 H 1.09008 * 109.47142 * 179.97438 * 24 21 20 48 48 H 1.09000 * 109.47603 * 299.99741 * 24 21 20 49 49 H 1.07999 * 119.96307 * 179.97438 * 25 20 19 50 50 H 1.08000 * 120.03608 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2370 1.4428 1.2696 6 6 4.4879 2.8636 1.7046 7 1 4.1375 3.6844 1.0963 8 6 5.1648 3.1158 2.8790 9 7 5.3842 4.3557 3.2584 10 14 5.7714 1.6962 3.9306 11 1 7.1451 1.3203 3.5101 12 1 5.7858 2.1078 5.3573 13 1 4.8657 0.5317 3.7604 14 6 4.1792 1.4424 -1.1663 15 8 5.3951 1.4429 -1.1659 16 7 3.5058 1.4428 -2.3338 17 6 4.2015 1.3308 -3.5429 18 6 5.3607 0.5691 -3.6107 19 6 6.0473 0.4642 -4.8045 20 6 5.5761 1.1082 -5.9338 21 6 6.3244 0.9864 -7.2362 22 6 6.3920 -0.4851 -7.6499 23 6 5.5978 1.7871 -8.3187 24 6 7.7428 1.5330 -7.0624 25 6 4.4195 1.8635 -5.8706 26 6 3.7308 1.9763 -4.6787 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.6476 0.9290 2.0291 35 1 5.1894 0.9290 1.1397 36 1 5.8607 4.5332 4.0843 37 1 2.5389 1.5206 -2.3360 38 1 5.7269 0.0625 -2.7300 39 1 6.9507 -0.1253 -4.8571 40 1 5.3815 -0.8745 -7.7736 41 1 6.9336 -0.5732 -8.5916 42 1 6.9094 -1.0558 -6.8788 43 1 5.5492 2.8354 -8.0242 44 1 6.1393 1.6994 -9.2607 45 1 4.5875 1.3973 -8.4423 46 1 8.2603 0.9622 -6.2913 47 1 8.2843 1.4445 -8.0044 48 1 7.6948 2.5814 -6.7678 49 1 4.0542 2.3656 -6.7543 50 1 2.8273 2.5659 -4.6302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191140082.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:33 Heat of formation + Delta-G solvation = -14.431720 kcal Electronic energy + Delta-G solvation = -27041.463106 eV Core-core repulsion = 23454.324763 eV Total energy + Delta-G solvation = -3587.138343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43399 -39.25305 -36.77402 -35.68425 -33.92246 -33.04112 -32.05366 -30.96712 -29.05278 -27.69667 -27.46630 -27.35121 -25.71143 -23.33497 -22.41616 -21.92226 -21.55621 -19.43496 -19.11446 -17.98327 -17.07041 -16.89001 -15.88346 -15.28679 -15.00741 -14.65090 -14.45009 -14.36688 -14.27240 -13.96994 -13.70861 -13.60570 -13.33938 -13.02450 -12.77189 -12.62004 -12.45380 -12.20875 -12.05507 -11.98644 -11.97709 -11.81462 -11.47808 -11.41585 -11.33271 -11.09199 -10.89753 -10.77508 -10.61808 -10.55126 -10.49011 -10.17881 -9.86270 -9.53765 -9.36012 -8.70897 -8.58245 -7.92294 -7.56053 -6.07910 -4.06622 1.50733 1.61635 3.12300 3.29889 3.35624 3.37765 3.65239 4.08529 4.29391 4.39968 4.55883 4.67076 4.89035 5.03612 5.10998 5.14226 5.15891 5.22723 5.24689 5.35637 5.41276 5.49019 5.51311 5.54614 5.62371 5.69615 5.74980 5.78683 5.78819 5.85232 5.86564 5.90764 5.94466 6.03868 6.12776 6.17980 6.20099 6.21532 6.38450 6.44862 6.53101 6.67776 6.78699 6.82534 6.88756 7.24647 7.32268 7.49463 7.62583 8.45103 8.48305 8.95371 9.15122 9.52239 11.05621 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.003204 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.208734 B = 8735.754052 C = 9896.511289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.112 3.888 4 N -0.603 5.603 5 C 0.232 3.768 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.876 3.124 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.701 3.299 15 O -0.567 6.567 16 N -0.695 5.695 17 C 0.179 3.821 18 C -0.120 4.120 19 C -0.094 4.094 20 C -0.101 4.101 21 C -0.025 4.025 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.101 4.101 26 C -0.155 4.155 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.401 0.599 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.125 0.875 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 -9.646 -19.963 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.012 4.012 4 N -0.336 5.336 5 C 0.111 3.889 6 C -0.568 4.568 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.703 3.297 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.403 3.597 15 O -0.443 6.443 16 N -0.344 5.344 17 C 0.083 3.917 18 C -0.140 4.140 19 C -0.113 4.113 20 C -0.102 4.102 21 C -0.025 4.025 22 C -0.195 4.195 23 C -0.200 4.200 24 C -0.197 4.197 25 C -0.120 4.120 26 C -0.176 4.176 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.238 0.762 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.143 0.857 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.237 -9.536 -19.655 22.465 hybrid contribution -0.199 -0.370 0.814 0.916 sum -5.436 -9.905 -18.841 21.969 Atomic orbital electron populations 1.21700 0.95396 1.01574 1.01933 1.22024 0.95781 0.97915 1.02681 1.21489 0.81009 0.95868 1.02874 1.47239 1.05401 1.75326 1.05670 1.19592 0.92155 0.98308 0.78855 1.21353 1.37028 0.91348 1.07040 0.90808 1.24847 0.95238 0.95558 0.97351 1.69894 1.41484 1.18657 1.23556 0.86855 0.80179 0.82914 0.79753 1.19883 1.21092 1.19059 1.15872 0.85490 0.78260 0.80093 1.90909 1.11314 1.56465 1.85569 1.42973 1.09994 1.77673 1.03801 1.17567 0.94004 0.95375 0.84750 1.21208 0.95568 0.98814 0.98424 1.20797 0.99289 0.99413 0.91758 1.19658 0.96173 0.99743 0.94638 1.19418 0.95008 0.95885 0.92220 1.21885 1.01825 0.94772 1.00980 1.21952 1.00222 1.00069 0.97747 1.21901 0.94863 1.01424 1.01464 1.20838 0.94979 0.99037 0.97104 1.20818 1.02377 1.01700 0.92749 0.92828 0.92786 0.92332 0.92213 0.91277 0.89296 0.92164 0.95061 0.94461 0.92569 0.76214 0.84654 0.86288 0.92593 0.92677 0.92437 0.92264 0.92661 0.92356 0.92361 0.92680 0.92407 0.85743 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.15 -1.83 6.26 -26.73 -0.17 -2.00 16 3 C 0.11 1.72 5.22 -4.04 -0.02 1.70 16 4 N -0.60 -12.36 2.46 -180.80 -0.44 -12.80 16 5 C 0.23 5.64 4.23 -5.19 -0.02 5.62 16 6 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 7 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 10 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 14 C 0.70 14.74 8.02 -86.92 -0.70 14.04 16 15 O -0.57 -14.27 13.62 5.29 0.07 -14.20 16 16 N -0.70 -11.36 5.22 -14.22 -0.07 -11.44 16 17 C 0.18 2.84 6.28 -83.69 -0.53 2.32 16 18 C -0.12 -1.96 8.66 -39.39 -0.34 -2.30 16 19 C -0.09 -1.29 8.70 -39.61 -0.34 -1.63 16 20 C -0.10 -1.22 4.76 -104.59 -0.50 -1.72 16 21 C -0.03 -0.24 0.85 -155.66 -0.13 -0.37 16 22 C -0.14 -1.16 8.29 37.16 0.31 -0.85 16 23 C -0.14 -1.15 7.13 37.16 0.26 -0.88 16 24 C -0.14 -1.31 8.29 37.16 0.31 -1.01 16 25 C -0.10 -1.20 8.97 -39.61 -0.36 -1.56 16 26 C -0.16 -2.05 9.96 -39.39 -0.39 -2.44 16 27 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 33 H 0.06 0.78 6.29 -51.93 -0.33 0.45 16 34 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 35 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.40 5.27 6.51 -40.82 -0.27 5.00 16 38 H 0.14 2.51 6.42 -52.49 -0.34 2.17 16 39 H 0.12 1.44 7.09 -52.49 -0.37 1.07 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.50 7.38 -51.93 -0.38 0.11 16 43 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 44 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 45 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 46 H 0.06 0.57 7.38 -51.93 -0.38 0.19 16 47 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.12 1.19 5.88 -52.49 -0.31 0.88 16 50 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -33.99 394.28 -9.63 -43.62 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.54 Total: 4.78 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -2.69 Total: -5.75 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.26 Total: -51.31 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.07 Total: -14.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.99 -9.63 -43.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191140082.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.188 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds