Wall clock time and date at job start Tue Mar 31 2020 12:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46615 * 2 1 4 4 N 1.46507 * 109.46655 * 179.97438 * 3 2 1 5 5 C 1.46499 * 120.00357 * 270.00235 * 4 3 2 6 6 C 1.50702 * 109.46939 * 270.00245 * 5 4 3 7 7 H 1.08001 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00254 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 119.99852 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47365 * 89.99916 * 10 8 6 12 12 H 1.48496 * 109.47182 * 209.99589 * 10 8 6 13 13 H 1.48500 * 109.47414 * 329.99929 * 10 8 6 14 14 C 1.34776 * 119.99501 * 90.00029 * 4 3 2 15 15 O 1.21586 * 119.99951 * 179.97438 * 14 4 3 16 16 N 1.34774 * 120.00425 * 0.02562 * 14 4 3 17 17 C 1.39942 * 120.00032 * 185.29471 * 16 14 4 18 18 C 1.38870 * 120.07140 * 33.43626 * 17 16 14 19 19 C 1.38113 * 119.92620 * 180.21162 * 18 17 16 20 20 C 1.38281 * 120.07292 * 359.50764 * 19 18 17 21 21 C 1.50695 * 119.92987 * 180.27776 * 20 19 18 22 22 C 1.53008 * 109.47110 * 60.00457 * 21 20 19 23 23 C 1.52996 * 109.47208 * 179.97438 * 21 20 19 24 24 C 1.52997 * 109.47244 * 300.00206 * 21 20 19 25 25 C 1.38279 * 120.13753 * 0.25718 * 20 19 18 26 26 C 1.38117 * 120.07345 * 359.97438 * 25 20 19 27 27 H 1.09007 * 109.46907 * 60.00464 * 1 2 3 28 28 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47854 * 299.99893 * 1 2 3 30 30 H 1.08993 * 109.47357 * 240.00107 * 2 1 3 31 31 H 1.09007 * 109.46907 * 119.99536 * 2 1 3 32 32 H 1.09001 * 109.47052 * 60.00254 * 3 2 1 33 33 H 1.08996 * 109.47539 * 299.99258 * 3 2 1 34 34 H 1.09001 * 109.46816 * 29.99800 * 5 4 3 35 35 H 1.08996 * 109.47374 * 150.00328 * 5 4 3 36 36 H 0.96995 * 120.00511 * 180.02562 * 9 8 6 37 37 H 0.97004 * 120.00014 * 5.29145 * 16 14 4 38 38 H 1.08000 * 120.03160 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.96187 * 179.79140 * 19 18 17 40 40 H 1.08996 * 109.47138 * 59.99800 * 22 21 20 41 41 H 1.08999 * 109.46747 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.46643 * 299.99602 * 22 21 20 43 43 H 1.09001 * 109.47123 * 60.00250 * 23 21 20 44 44 H 1.09008 * 109.47449 * 179.97438 * 23 21 20 45 45 H 1.08996 * 109.47299 * 300.00359 * 23 21 20 46 46 H 1.09003 * 109.47121 * 60.00165 * 24 21 20 47 47 H 1.09008 * 109.47142 * 179.97438 * 24 21 20 48 48 H 1.09000 * 109.47603 * 299.99741 * 24 21 20 49 49 H 1.07999 * 119.96307 * 179.97438 * 25 20 19 50 50 H 1.08000 * 120.03608 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2370 1.4428 1.2696 6 6 4.4879 2.8636 1.7046 7 1 4.1375 3.6844 1.0963 8 6 5.1648 3.1158 2.8790 9 7 5.3842 4.3557 3.2584 10 14 5.7714 1.6962 3.9306 11 1 7.1451 1.3203 3.5101 12 1 5.7858 2.1078 5.3573 13 1 4.8657 0.5317 3.7604 14 6 4.1792 1.4424 -1.1663 15 8 5.3951 1.4429 -1.1659 16 7 3.5058 1.4428 -2.3338 17 6 4.2015 1.3308 -3.5429 18 6 5.3607 0.5691 -3.6107 19 6 6.0473 0.4642 -4.8045 20 6 5.5761 1.1082 -5.9338 21 6 6.3244 0.9864 -7.2362 22 6 6.3920 -0.4851 -7.6499 23 6 5.5978 1.7871 -8.3187 24 6 7.7428 1.5330 -7.0624 25 6 4.4195 1.8635 -5.8706 26 6 3.7308 1.9763 -4.6787 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.6476 0.9290 2.0291 35 1 5.1894 0.9290 1.1397 36 1 5.8607 4.5332 4.0843 37 1 2.5389 1.5206 -2.3360 38 1 5.7269 0.0625 -2.7300 39 1 6.9507 -0.1253 -4.8571 40 1 5.3815 -0.8745 -7.7736 41 1 6.9336 -0.5732 -8.5916 42 1 6.9094 -1.0558 -6.8788 43 1 5.5492 2.8354 -8.0242 44 1 6.1393 1.6994 -9.2607 45 1 4.5875 1.3973 -8.4423 46 1 8.2603 0.9622 -6.2913 47 1 8.2843 1.4445 -8.0044 48 1 7.6948 2.5814 -6.7678 49 1 4.0542 2.3656 -6.7543 50 1 2.8273 2.5659 -4.6302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191140082.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:33 Heat of formation + Delta-G solvation = -33.778533 kcal Electronic energy + Delta-G solvation = -27042.302047 eV Core-core repulsion = 23454.324763 eV Total energy + Delta-G solvation = -3587.977284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80824 -40.42135 -37.91464 -37.10496 -35.39072 -34.71462 -33.67145 -32.02370 -30.60695 -29.17099 -28.16775 -28.05242 -26.98201 -24.97594 -23.54562 -23.32677 -22.65548 -20.82487 -20.10836 -19.39249 -19.09820 -18.40587 -17.11492 -16.65057 -16.40613 -15.92298 -15.86241 -15.60083 -15.37610 -15.08084 -15.03601 -14.58446 -14.51591 -14.38635 -14.11074 -13.83883 -13.67221 -13.56850 -13.18655 -13.04619 -12.98014 -12.76566 -12.69717 -12.50115 -12.41708 -12.36973 -12.26154 -11.98677 -11.84850 -11.75175 -11.71472 -11.56653 -11.40150 -11.21726 -10.91600 -10.83827 -9.81114 -9.54587 -8.83492 -8.34770 -6.39870 0.39430 0.52123 1.31357 1.36347 1.44171 1.67297 2.13646 2.30108 2.91595 2.92297 3.00884 3.74557 3.85619 3.92879 4.08650 4.11649 4.17016 4.19310 4.34615 4.43218 4.50041 4.52440 4.62498 4.68429 4.70409 4.74110 4.82734 4.85644 4.87406 4.95944 4.99293 5.05213 5.07866 5.09456 5.15649 5.18445 5.22626 5.26322 5.35951 5.42032 5.45017 5.46984 5.49158 5.52067 5.59169 5.66473 5.79156 5.99947 6.16376 6.25768 6.61024 6.97133 7.21721 7.56740 8.82438 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.003204 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.208734 B = 8735.754052 C = 9896.511289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.106 3.894 4 N -0.609 5.609 5 C 0.243 3.757 6 C -0.536 4.536 7 H 0.026 0.974 8 C 0.011 3.989 9 N -0.945 5.945 10 Si 0.948 3.052 11 H -0.277 1.277 12 H -0.274 1.274 13 H -0.236 1.236 14 C 0.695 3.305 15 O -0.619 6.619 16 N -0.676 5.676 17 C 0.147 3.853 18 C -0.144 4.144 19 C -0.101 4.101 20 C -0.094 4.094 21 C -0.026 4.026 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.098 4.098 26 C -0.148 4.148 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.269 0.731 37 H 0.417 0.583 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.046 0.954 49 H 0.156 0.844 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 -11.049 -22.167 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.017 4.017 4 N -0.343 5.343 5 C 0.121 3.879 6 C -0.575 4.575 7 H 0.045 0.955 8 C -0.187 4.187 9 N -0.586 5.586 10 Si 0.770 3.230 11 H -0.203 1.203 12 H -0.199 1.199 13 H -0.159 1.159 14 C 0.397 3.603 15 O -0.499 6.499 16 N -0.327 5.327 17 C 0.052 3.948 18 C -0.165 4.165 19 C -0.119 4.119 20 C -0.095 4.095 21 C -0.026 4.026 22 C -0.193 4.193 23 C -0.199 4.199 24 C -0.198 4.198 25 C -0.116 4.116 26 C -0.169 4.169 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.256 0.744 38 H 0.121 0.879 39 H 0.145 0.855 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.066 0.934 49 H 0.174 0.826 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.900 -10.953 -21.909 25.447 hybrid contribution 0.310 0.154 1.332 1.377 sum -6.590 -10.799 -20.577 24.155 Atomic orbital electron populations 1.21670 0.92761 1.02768 1.02803 1.21922 0.97860 0.95416 1.02206 1.21809 0.77898 0.98239 1.03722 1.47210 1.07395 1.75262 1.04413 1.19232 0.92348 0.95246 0.81115 1.21569 1.36899 0.92400 1.06624 0.95544 1.25841 0.95241 0.98640 0.98930 1.70048 1.42712 1.21303 1.24498 0.85718 0.79573 0.79891 0.77783 1.20306 1.19875 1.15944 1.16095 0.85052 0.77915 0.81218 1.90865 1.13739 1.58746 1.86508 1.42629 1.10565 1.76817 1.02657 1.17827 0.94645 0.97091 0.85191 1.21110 0.96826 1.00131 0.98387 1.20920 0.99487 0.99959 0.91563 1.20042 0.96120 0.98157 0.95174 1.19504 0.94739 0.97051 0.91285 1.21875 1.02130 0.93731 1.01581 1.21955 1.00678 0.99625 0.97648 1.21915 0.95110 1.00545 1.02192 1.21252 0.94419 0.98323 0.97653 1.21114 1.03042 1.00797 0.91953 0.91171 0.91430 0.92307 0.91991 0.92527 0.90223 0.89594 0.92878 0.96323 0.92250 0.74351 0.87937 0.85524 0.92443 0.90958 0.93154 0.92343 0.91166 0.91507 0.93323 0.90738 0.93432 0.82606 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 71.98 0.71 -1.70 16 2 C -0.14 -3.22 6.26 30.60 0.19 -3.02 16 3 C 0.11 3.19 5.22 86.38 0.45 3.64 16 4 N -0.61 -25.58 2.46 -844.18 -2.07 -27.66 16 5 C 0.24 12.10 4.23 85.63 0.36 12.46 16 6 C -0.54 -32.20 9.94 25.60 0.25 -31.94 16 7 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 8 C 0.01 0.69 5.47 84.66 0.46 1.15 16 9 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 10 Si 0.95 45.06 27.47 68.60 1.88 46.94 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 14 C 0.70 30.36 8.02 179.06 1.44 31.79 16 15 O -0.62 -33.06 13.62 -3.99 -0.05 -33.12 16 16 N -0.68 -22.29 5.22 -317.18 -1.66 -23.95 16 17 C 0.15 4.71 6.28 38.15 0.24 4.95 16 18 C -0.14 -4.95 8.66 22.39 0.19 -4.76 16 19 C -0.10 -2.80 8.70 22.25 0.19 -2.61 16 20 C -0.09 -2.13 4.76 -19.85 -0.09 -2.22 16 21 C -0.03 -0.43 0.85 -52.93 -0.05 -0.47 16 22 C -0.14 -1.98 8.29 71.98 0.60 -1.38 16 23 C -0.14 -1.79 7.13 71.98 0.51 -1.27 16 24 C -0.14 -2.42 8.29 71.98 0.60 -1.83 16 25 C -0.10 -2.09 8.97 22.25 0.20 -1.89 16 26 C -0.15 -3.64 9.96 22.39 0.22 -3.42 16 27 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 33 H 0.09 2.11 6.29 -2.39 -0.02 2.09 16 34 H 0.05 2.41 7.13 -2.39 -0.02 2.39 16 35 H 0.02 1.00 6.85 -2.39 -0.02 0.98 16 36 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.42 10.50 6.51 -92.71 -0.60 9.90 16 38 H 0.10 4.16 6.42 -2.91 -0.02 4.15 16 39 H 0.13 3.18 7.09 -2.91 -0.02 3.16 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.05 0.80 7.38 -2.39 -0.02 0.78 16 43 H 0.06 0.76 7.51 -2.39 -0.02 0.74 16 44 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.07 0.74 7.51 -2.39 -0.02 0.72 16 46 H 0.05 0.92 7.38 -2.39 -0.02 0.90 16 47 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.16 2.35 5.88 -2.91 -0.02 2.33 16 50 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -79.15 394.28 5.14 -74.01 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.25 Total: 26.69 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 6.49 Total: -2.53 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -3.43 Total: -111.99 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.05 Total: -33.12 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -79.15 5.14 -74.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191140082.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.230 kcal (2) G-P(sol) polarization free energy of solvation -79.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds