Wall clock time and date at job start Tue Mar 31 2020 13:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 108.74075 * 2 1 4 4 C 1.54283 * 108.77228 * 118.30868 * 2 1 3 5 5 C 1.54071 * 112.29157 * 162.49588 * 4 2 1 6 6 N 1.44272 * 111.97752 * 41.08119 * 5 4 2 7 7 C 1.46907 * 110.99520 * 140.69279 * 6 5 4 8 8 C 1.50699 * 109.47414 * 57.14575 * 7 6 5 9 9 C 1.38301 * 119.92800 * 265.92760 * 8 7 6 10 10 C 1.38100 * 120.06567 * 179.72967 * 9 8 7 11 11 C 1.38876 * 119.93304 * 0.53634 * 10 9 8 12 12 O 1.35746 * 120.06898 * 179.75538 * 11 10 9 13 13 C 1.34829 * 116.99905 * 185.20083 * 12 11 10 14 14 H 1.08003 * 120.00033 * 355.26914 * 13 12 11 15 15 C 1.38660 * 120.00131 * 175.26547 * 13 12 11 16 16 N 1.31553 * 120.00024 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99975 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47187 * 89.99629 * 17 15 13 19 19 H 1.48500 * 109.47212 * 210.00026 * 17 15 13 20 20 H 1.48503 * 109.47035 * 329.99776 * 17 15 13 21 21 C 1.38875 * 119.85983 * 359.73335 * 11 10 9 22 22 C 1.38104 * 119.93059 * 359.97438 * 21 11 10 23 23 C 1.47800 * 109.46421 * 263.56343 * 6 5 4 24 24 C 1.45860 * 112.91914 * 83.26609 * 23 6 5 25 25 C 1.50354 * 108.71527 * 241.71461 * 2 1 3 26 26 H 1.08994 * 109.62001 * 266.81343 * 25 2 1 27 27 C 1.53006 * 109.46958 * 27.15653 * 25 2 1 28 28 N 1.46896 * 109.46991 * 184.37855 * 27 25 2 29 29 H 1.09007 * 109.46787 * 301.69612 * 1 2 3 30 30 H 1.09000 * 109.46786 * 61.69025 * 1 2 3 31 31 H 1.08996 * 109.47159 * 181.69339 * 1 2 3 32 32 H 1.09001 * 108.92152 * 41.76912 * 4 2 1 33 33 H 1.08998 * 108.92253 * 283.21537 * 4 2 1 34 34 H 1.09004 * 108.97987 * 280.44095 * 5 4 2 35 35 H 1.08996 * 108.98033 * 161.72849 * 5 4 2 36 36 H 1.09001 * 109.46567 * 177.14393 * 7 6 5 37 37 H 1.08995 * 109.46907 * 297.14025 * 7 6 5 38 38 H 1.07998 * 119.96696 * 359.97438 * 9 8 7 39 39 H 1.08007 * 120.03186 * 180.26875 * 10 9 8 40 40 H 0.96999 * 120.00614 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.03539 * 180.02562 * 21 11 10 42 42 H 1.08003 * 119.95919 * 179.97438 * 22 21 11 43 43 H 1.09002 * 108.79895 * 322.37172 * 23 6 5 44 44 H 1.09002 * 108.70345 * 204.08847 * 23 6 5 45 45 H 1.08997 * 109.05702 * 59.21583 * 24 23 6 46 46 H 1.08996 * 109.05616 * 178.20024 * 24 23 6 47 47 H 1.09002 * 109.46931 * 304.37249 * 27 25 2 48 48 H 1.08993 * 109.47315 * 64.37654 * 27 25 2 49 49 H 1.00902 * 111.00512 * 56.04279 * 28 27 25 50 50 H 1.00907 * 110.99938 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8802 1.0322 0.0000 4 6 2.0265 -0.6927 1.2861 5 6 3.5018 -1.1251 1.1847 6 7 4.3143 -0.1248 0.5361 7 6 5.6263 -0.0094 1.1869 8 6 6.3120 -1.3513 1.1766 9 6 6.1934 -2.1952 2.2658 10 6 6.8159 -3.4279 2.2570 11 6 7.5709 -3.8152 1.1576 12 8 8.1881 -5.0241 1.1482 13 6 8.9915 -5.2930 0.0992 14 1 9.0607 -4.5940 -0.7211 15 6 9.7289 -6.4670 0.0738 16 7 10.5131 -6.7291 -0.9494 17 14 9.6088 -7.6764 1.4924 18 1 8.5182 -8.6478 1.2237 19 1 10.8959 -8.4035 1.6333 20 1 9.3168 -6.9391 2.7480 21 6 7.6927 -2.9631 0.0677 22 6 7.0627 -1.7342 0.0800 23 6 4.4609 -0.4618 -0.8954 24 6 3.3333 -0.0111 -1.7035 25 6 2.0124 -0.6748 -1.2540 26 1 2.1839 -1.7331 -1.0574 27 6 0.9604 -0.5190 -2.3540 28 7 1.3836 -1.2664 -3.5457 29 1 -0.3633 0.5400 0.8745 30 1 -0.3633 0.4874 -0.9048 31 1 -0.3633 -1.0272 0.0304 32 1 1.4121 -1.5735 1.4729 33 1 1.9170 -0.0037 2.1235 34 1 3.5609 -2.0532 0.6160 35 1 3.8895 -1.3008 2.1881 36 1 6.2368 0.7148 0.6475 37 1 5.4932 0.3227 2.2164 38 1 5.6100 -1.8916 3.1225 39 1 6.7194 -4.0883 3.1062 40 1 11.0293 -7.5502 -0.9671 41 1 8.2787 -3.2616 -0.7889 42 1 7.1574 -1.0711 -0.7672 43 1 4.5535 -1.5434 -0.9940 44 1 5.3715 0.0037 -1.2726 45 1 3.2381 1.0707 -1.6096 46 1 3.5207 -0.2623 -2.7474 47 1 0.0054 -0.9085 -2.0012 48 1 0.8518 0.5357 -2.6062 49 1 1.5536 -2.2358 -3.3232 50 1 0.7046 -1.1796 -4.2871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205617947.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:39 Heat of formation + Delta-G solvation = -1.274193 kcal Electronic energy + Delta-G solvation = -27496.577120 eV Core-core repulsion = 23910.009330 eV Total energy + Delta-G solvation = -3586.567790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.15048 -39.06850 -37.42306 -35.71604 -33.83971 -32.48955 -32.19179 -30.55236 -30.16469 -28.28207 -26.82436 -25.64682 -24.47527 -23.21217 -22.70028 -21.76123 -20.88171 -19.99174 -19.03648 -17.92322 -17.24722 -16.16871 -15.84896 -15.42815 -15.37218 -14.94952 -14.81771 -14.78497 -14.13323 -13.85050 -13.78320 -13.61149 -13.43566 -13.02456 -12.88492 -12.70213 -12.56547 -12.50635 -12.26410 -12.15667 -11.99426 -11.52448 -11.32712 -11.19167 -11.00702 -10.82871 -10.73794 -10.70275 -10.54968 -10.35180 -10.30666 -10.20361 -10.09979 -9.41741 -8.90308 -8.77734 -8.29605 -8.18951 -7.33985 -6.44863 -4.11697 2.08266 2.14686 3.19900 3.22572 3.37208 4.09136 4.20510 4.37805 4.48759 4.58582 4.74171 4.80766 4.90362 5.04106 5.07486 5.13913 5.22164 5.31400 5.32968 5.38592 5.40360 5.51600 5.59710 5.62454 5.65269 5.70821 5.73647 5.84533 5.87615 5.92795 5.97755 6.06878 6.08515 6.14419 6.17126 6.29671 6.30951 6.37507 6.39493 6.51023 6.53360 6.74473 6.95251 6.98885 7.14070 7.22979 7.23688 7.29099 7.38233 7.57533 7.76407 8.00337 8.90182 9.52291 10.62743 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017418 B = 0.002985 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.120518 B = 9377.275884 C = 9901.645384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.075 4.075 3 H 0.075 0.925 4 C -0.102 4.102 5 C 0.054 3.946 6 N -0.520 5.520 7 C 0.108 3.892 8 C -0.212 4.212 9 C -0.067 4.067 10 C -0.194 4.194 11 C 0.161 3.839 12 O -0.217 6.217 13 C -0.390 4.390 14 H 0.106 0.894 15 C 0.064 3.936 16 N -0.879 5.879 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.260 1.260 21 C -0.221 4.221 22 C -0.062 4.062 23 C 0.054 3.946 24 C -0.102 4.102 25 C -0.077 4.077 26 H 0.065 0.935 27 C 0.063 3.937 28 N -0.852 5.852 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.280 0.720 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.032 0.968 48 H 0.069 0.931 49 H 0.340 0.660 50 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.458 13.491 0.996 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.095 4.095 3 H 0.093 0.907 4 C -0.141 4.141 5 C -0.075 4.075 6 N -0.242 5.242 7 C -0.019 4.019 8 C -0.215 4.215 9 C -0.086 4.086 10 C -0.213 4.213 11 C 0.109 3.891 12 O -0.122 6.122 13 C -0.466 4.466 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.517 5.517 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.240 4.240 22 C -0.080 4.080 23 C -0.073 4.073 24 C -0.140 4.140 25 C -0.096 4.096 26 H 0.083 0.917 27 C -0.068 4.068 28 N -0.382 5.382 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.149 0.851 42 H 0.125 0.875 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.050 0.950 48 H 0.087 0.913 49 H 0.153 0.847 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.919 14.119 1.083 22.839 hybrid contribution -0.278 -2.049 0.475 2.122 sum -18.197 12.070 1.557 21.891 Atomic orbital electron populations 1.22144 0.96523 1.01206 1.01341 1.20776 0.94042 1.00750 0.93886 0.90675 1.21999 0.95328 0.99625 0.97119 1.21882 0.92958 0.93247 0.99375 1.62039 1.13211 1.46502 1.02432 1.21069 0.88226 0.93295 0.99342 1.20064 1.05931 0.98928 0.96534 1.20520 0.97960 0.93146 0.96944 1.20203 1.04637 0.98205 0.98251 1.19126 0.91711 0.85106 0.93176 1.83568 1.54640 1.28722 1.45295 1.20771 1.21038 1.07397 0.97355 0.87641 1.24467 0.94484 0.97197 0.97805 1.69642 1.26162 1.26212 1.29642 0.86181 0.77614 0.80495 0.82625 1.19878 1.20758 1.18369 1.21277 1.06403 0.95827 1.00507 1.20680 0.95247 0.95428 0.96688 1.21035 0.98446 0.99528 0.88307 1.20575 0.93569 1.00210 0.99665 1.20917 0.95014 1.00134 0.93494 0.91650 1.22106 0.95958 0.98502 0.90192 1.58682 1.52045 1.17261 1.10169 0.93228 0.92429 0.93152 0.92641 0.92298 0.94074 0.91677 0.90821 0.90815 0.87149 0.86692 0.91007 0.85053 0.87473 0.94111 0.91832 0.92148 0.90344 0.95039 0.91293 0.84746 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 7.72 37.16 0.29 -0.94 16 2 C -0.08 -0.71 2.22 -91.27 -0.20 -0.91 16 3 H 0.07 0.78 7.38 -51.93 -0.38 0.40 16 4 C -0.10 -1.04 5.51 -25.50 -0.14 -1.18 16 5 C 0.05 0.66 4.14 -4.67 -0.02 0.64 16 6 N -0.52 -6.35 4.45 -241.00 -1.07 -7.42 16 7 C 0.11 1.39 5.29 -4.97 -0.03 1.36 16 8 C -0.21 -3.35 4.32 -104.58 -0.45 -3.80 16 9 C -0.07 -1.10 8.46 -39.61 -0.34 -1.43 16 10 C -0.19 -3.79 9.99 -39.40 -0.39 -4.18 16 11 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 12 O -0.22 -5.73 8.59 0.06 0.00 -5.73 16 13 C -0.39 -10.98 9.95 30.89 0.31 -10.68 16 14 H 0.11 3.04 5.43 -52.48 -0.29 2.75 16 15 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 16 N -0.88 -25.37 13.96 55.48 0.77 -24.60 16 17 Si 0.91 21.65 28.62 -169.99 -4.86 16.79 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 21 C -0.22 -4.72 9.17 -39.39 -0.36 -5.08 16 22 C -0.06 -1.09 8.43 -39.61 -0.33 -1.42 16 23 C 0.05 0.68 3.64 -6.71 -0.02 0.65 16 24 C -0.10 -1.12 4.90 -29.31 -0.14 -1.27 16 25 C -0.08 -0.76 1.87 -91.14 -0.17 -0.93 16 26 H 0.07 0.75 7.15 -51.93 -0.37 0.38 16 27 C 0.06 0.53 4.87 -3.82 -0.02 0.52 16 28 N -0.85 -7.23 8.87 -10.37 -0.09 -7.32 16 29 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.42 6.08 -51.93 -0.32 0.10 16 31 H 0.05 0.40 7.84 -51.93 -0.41 -0.01 16 32 H 0.05 0.54 7.96 -51.93 -0.41 0.13 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.58 6.51 -51.93 -0.34 0.24 16 35 H 0.06 0.80 5.76 -51.93 -0.30 0.51 16 36 H 0.07 0.91 7.89 -51.93 -0.41 0.50 16 37 H 0.07 0.88 8.03 -51.93 -0.42 0.47 16 38 H 0.11 1.52 7.30 -52.49 -0.38 1.13 16 39 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 40 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 42 H 0.11 1.68 7.18 -52.48 -0.38 1.30 16 43 H 0.04 0.60 6.82 -51.93 -0.35 0.24 16 44 H 0.06 0.80 6.80 -51.93 -0.35 0.45 16 45 H 0.06 0.66 7.59 -51.93 -0.39 0.27 16 46 H 0.08 0.91 7.38 -51.93 -0.38 0.53 16 47 H 0.03 0.25 6.02 -51.93 -0.31 -0.06 16 48 H 0.07 0.60 7.91 -51.93 -0.41 0.18 16 49 H 0.34 2.84 8.99 -39.29 -0.35 2.48 16 50 H 0.34 2.28 9.08 -39.29 -0.36 1.92 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -28.57 371.81 -10.05 -38.62 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.02 Total: 7.60 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.38 Total: -23.53 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: -0.39 Total: -39.34 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: 0.00 Total: -5.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.57 -10.05 -38.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205617947.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.345 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds