Wall clock time and date at job start Tue Mar 31 2020 13:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 108.74075 * 2 1 4 4 C 1.54283 * 108.77228 * 118.30868 * 2 1 3 5 5 C 1.54071 * 112.29157 * 162.49588 * 4 2 1 6 6 N 1.44272 * 111.97752 * 41.08119 * 5 4 2 7 7 C 1.46907 * 110.99520 * 140.69279 * 6 5 4 8 8 C 1.50699 * 109.47414 * 57.14575 * 7 6 5 9 9 C 1.38301 * 119.92800 * 265.92760 * 8 7 6 10 10 C 1.38100 * 120.06567 * 179.72967 * 9 8 7 11 11 C 1.38876 * 119.93304 * 0.53634 * 10 9 8 12 12 O 1.35746 * 120.06898 * 179.75538 * 11 10 9 13 13 C 1.34829 * 116.99905 * 185.20083 * 12 11 10 14 14 H 1.08003 * 120.00033 * 355.26914 * 13 12 11 15 15 C 1.38660 * 120.00131 * 175.26547 * 13 12 11 16 16 N 1.31553 * 120.00024 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99975 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47187 * 89.99629 * 17 15 13 19 19 H 1.48500 * 109.47212 * 210.00026 * 17 15 13 20 20 H 1.48503 * 109.47035 * 329.99776 * 17 15 13 21 21 C 1.38875 * 119.85983 * 359.73335 * 11 10 9 22 22 C 1.38104 * 119.93059 * 359.97438 * 21 11 10 23 23 C 1.47800 * 109.46421 * 263.56343 * 6 5 4 24 24 C 1.45860 * 112.91914 * 83.26609 * 23 6 5 25 25 C 1.50354 * 108.71527 * 241.71461 * 2 1 3 26 26 H 1.08994 * 109.62001 * 266.81343 * 25 2 1 27 27 C 1.53006 * 109.46958 * 27.15653 * 25 2 1 28 28 N 1.46896 * 109.46991 * 184.37855 * 27 25 2 29 29 H 1.09007 * 109.46787 * 301.69612 * 1 2 3 30 30 H 1.09000 * 109.46786 * 61.69025 * 1 2 3 31 31 H 1.08996 * 109.47159 * 181.69339 * 1 2 3 32 32 H 1.09001 * 108.92152 * 41.76912 * 4 2 1 33 33 H 1.08998 * 108.92253 * 283.21537 * 4 2 1 34 34 H 1.09004 * 108.97987 * 280.44095 * 5 4 2 35 35 H 1.08996 * 108.98033 * 161.72849 * 5 4 2 36 36 H 1.09001 * 109.46567 * 177.14393 * 7 6 5 37 37 H 1.08995 * 109.46907 * 297.14025 * 7 6 5 38 38 H 1.07998 * 119.96696 * 359.97438 * 9 8 7 39 39 H 1.08007 * 120.03186 * 180.26875 * 10 9 8 40 40 H 0.96999 * 120.00614 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.03539 * 180.02562 * 21 11 10 42 42 H 1.08003 * 119.95919 * 179.97438 * 22 21 11 43 43 H 1.09002 * 108.79895 * 322.37172 * 23 6 5 44 44 H 1.09002 * 108.70345 * 204.08847 * 23 6 5 45 45 H 1.08997 * 109.05702 * 59.21583 * 24 23 6 46 46 H 1.08996 * 109.05616 * 178.20024 * 24 23 6 47 47 H 1.09002 * 109.46931 * 304.37249 * 27 25 2 48 48 H 1.08993 * 109.47315 * 64.37654 * 27 25 2 49 49 H 1.00902 * 111.00512 * 56.04279 * 28 27 25 50 50 H 1.00907 * 110.99938 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8802 1.0322 0.0000 4 6 2.0265 -0.6927 1.2861 5 6 3.5018 -1.1251 1.1847 6 7 4.3143 -0.1248 0.5361 7 6 5.6263 -0.0094 1.1869 8 6 6.3120 -1.3513 1.1766 9 6 6.1934 -2.1952 2.2658 10 6 6.8159 -3.4279 2.2570 11 6 7.5709 -3.8152 1.1576 12 8 8.1881 -5.0241 1.1482 13 6 8.9915 -5.2930 0.0992 14 1 9.0607 -4.5940 -0.7211 15 6 9.7289 -6.4670 0.0738 16 7 10.5131 -6.7291 -0.9494 17 14 9.6088 -7.6764 1.4924 18 1 8.5182 -8.6478 1.2237 19 1 10.8959 -8.4035 1.6333 20 1 9.3168 -6.9391 2.7480 21 6 7.6927 -2.9631 0.0677 22 6 7.0627 -1.7342 0.0800 23 6 4.4609 -0.4618 -0.8954 24 6 3.3333 -0.0111 -1.7035 25 6 2.0124 -0.6748 -1.2540 26 1 2.1839 -1.7331 -1.0574 27 6 0.9604 -0.5190 -2.3540 28 7 1.3836 -1.2664 -3.5457 29 1 -0.3633 0.5400 0.8745 30 1 -0.3633 0.4874 -0.9048 31 1 -0.3633 -1.0272 0.0304 32 1 1.4121 -1.5735 1.4729 33 1 1.9170 -0.0037 2.1235 34 1 3.5609 -2.0532 0.6160 35 1 3.8895 -1.3008 2.1881 36 1 6.2368 0.7148 0.6475 37 1 5.4932 0.3227 2.2164 38 1 5.6100 -1.8916 3.1225 39 1 6.7194 -4.0883 3.1062 40 1 11.0293 -7.5502 -0.9671 41 1 8.2787 -3.2616 -0.7889 42 1 7.1574 -1.0711 -0.7672 43 1 4.5535 -1.5434 -0.9940 44 1 5.3715 0.0037 -1.2726 45 1 3.2381 1.0707 -1.6096 46 1 3.5207 -0.2623 -2.7474 47 1 0.0054 -0.9085 -2.0012 48 1 0.8518 0.5357 -2.6062 49 1 1.5536 -2.2358 -3.3232 50 1 0.7046 -1.1796 -4.2871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205617947.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:38 Heat of formation + Delta-G solvation = -19.646903 kcal Electronic energy + Delta-G solvation = -27497.373821 eV Core-core repulsion = 23910.009330 eV Total energy + Delta-G solvation = -3587.364490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34305 -40.50479 -38.78542 -36.94063 -34.64941 -34.45894 -33.21089 -31.97301 -31.49274 -29.42342 -27.74134 -27.34822 -25.72931 -24.26954 -23.78517 -23.00636 -22.27867 -21.06836 -19.91241 -19.83161 -19.06888 -17.01808 -16.90402 -16.74328 -16.26299 -16.19471 -16.14861 -15.82966 -15.67514 -15.55962 -15.28481 -14.72687 -14.44250 -14.37525 -14.24845 -14.11816 -13.70412 -13.64482 -13.31354 -13.09747 -13.03898 -12.98690 -12.62375 -12.52888 -12.39513 -12.17413 -12.07165 -11.92934 -11.65244 -11.53992 -11.31815 -11.15483 -11.11071 -10.98666 -10.92853 -9.83516 -9.44607 -9.33767 -8.95668 -8.53194 -6.26172 0.52263 0.58509 1.28681 1.33147 1.48908 2.25047 2.70131 2.96125 3.10719 3.21793 3.70563 3.73448 3.94475 3.97362 4.02153 4.09155 4.16763 4.26464 4.29760 4.37708 4.46660 4.51554 4.53411 4.60400 4.71819 4.73318 4.80825 4.86980 4.87790 4.98359 4.99705 5.01646 5.04660 5.10126 5.17560 5.21169 5.27945 5.32576 5.34765 5.43865 5.52926 5.54359 5.56270 5.67406 5.71593 5.76626 5.87820 6.19139 6.20816 6.29123 6.32442 6.63100 6.80881 7.54900 8.58577 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.017418 B = 0.002985 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.120518 B = 9377.275884 C = 9901.645384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 H 0.070 0.930 4 C -0.099 4.099 5 C 0.054 3.946 6 N -0.509 5.509 7 C 0.108 3.892 8 C -0.184 4.184 9 C -0.058 4.058 10 C -0.193 4.193 11 C 0.121 3.879 12 O -0.245 6.245 13 C -0.400 4.400 14 H 0.079 0.921 15 C 0.010 3.990 16 N -0.923 5.923 17 Si 0.972 3.028 18 H -0.265 1.265 19 H -0.266 1.266 20 H -0.263 1.263 21 C -0.238 4.238 22 C -0.062 4.062 23 C 0.059 3.941 24 C -0.097 4.097 25 C -0.072 4.072 26 H 0.047 0.953 27 C 0.067 3.933 28 N -0.863 5.863 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.017 0.983 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.127 0.873 40 H 0.285 0.715 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.014 0.986 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.042 0.958 48 H 0.072 0.928 49 H 0.340 0.660 50 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.107 15.661 3.017 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 H 0.089 0.911 4 C -0.137 4.137 5 C -0.075 4.075 6 N -0.231 5.231 7 C -0.020 4.020 8 C -0.186 4.186 9 C -0.076 4.076 10 C -0.212 4.212 11 C 0.071 3.929 12 O -0.153 6.153 13 C -0.477 4.477 14 H 0.096 0.904 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.794 3.206 18 H -0.190 1.190 19 H -0.191 1.191 20 H -0.187 1.187 21 C -0.257 4.257 22 C -0.081 4.081 23 C -0.069 4.069 24 C -0.135 4.135 25 C -0.091 4.091 26 H 0.065 0.935 27 C -0.063 4.063 28 N -0.393 5.393 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.170 0.830 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.032 0.968 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.060 0.940 48 H 0.090 0.910 49 H 0.152 0.848 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.605 16.334 3.101 26.476 hybrid contribution 0.355 -2.405 -0.168 2.437 sum -20.250 13.928 2.933 24.752 Atomic orbital electron populations 1.22093 0.95125 1.01427 1.02120 1.20725 0.95202 1.00079 0.93118 0.91118 1.21973 0.93770 1.00107 0.97860 1.21931 0.94432 0.92239 0.98923 1.62129 1.12577 1.46248 1.02096 1.21262 0.88250 0.91247 1.01214 1.20573 1.03051 1.00037 0.94911 1.20988 0.96843 0.91544 0.98236 1.20531 1.03716 0.99556 0.97392 1.19670 0.93174 0.84963 0.95045 1.83508 1.56125 1.30858 1.44791 1.20693 1.21972 1.07414 0.97596 0.90387 1.25293 0.94176 0.98887 1.00457 1.69727 1.27737 1.27328 1.31619 0.85204 0.78332 0.78115 0.78981 1.19040 1.19109 1.18683 1.21260 1.07315 0.97498 0.99649 1.20914 0.94789 0.94167 0.98218 1.21016 0.99215 0.97777 0.88857 1.20490 0.93663 1.00481 0.98846 1.20863 0.94902 0.98871 0.94488 0.93470 1.22054 0.95784 0.98710 0.89724 1.58681 1.52704 1.17282 1.10626 0.92533 0.91642 0.93181 0.92263 0.91241 0.96470 0.91245 0.89584 0.88365 0.82995 0.85518 0.90512 0.87846 0.85521 0.96782 0.91895 0.91577 0.91217 0.94036 0.90977 0.84826 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 7.72 71.98 0.56 -1.38 16 2 C -0.07 -1.17 2.22 -11.21 -0.02 -1.19 16 3 H 0.07 1.25 7.38 -2.39 -0.02 1.23 16 4 C -0.10 -1.71 5.51 31.39 0.17 -1.54 16 5 C 0.05 1.16 4.14 87.16 0.36 1.52 16 6 N -0.51 -10.92 4.45 -916.38 -4.08 -15.00 16 7 C 0.11 2.34 5.29 85.56 0.45 2.80 16 8 C -0.18 -5.32 4.32 -19.84 -0.09 -5.41 16 9 C -0.06 -1.72 8.46 22.25 0.19 -1.53 16 10 C -0.19 -7.35 9.99 22.39 0.22 -7.12 16 11 C 0.12 5.71 6.65 22.58 0.15 5.86 16 12 O -0.25 -13.53 8.59 -22.69 -0.19 -13.73 16 13 C -0.40 -24.00 9.95 67.92 0.68 -23.33 16 14 H 0.08 4.93 5.43 -2.91 -0.02 4.91 16 15 C 0.01 0.60 5.49 84.84 0.47 1.07 16 16 N -0.92 -55.82 13.96 21.61 0.30 -55.52 16 17 Si 0.97 45.87 28.62 68.60 1.96 47.84 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.24 -10.66 9.17 22.39 0.21 -10.45 16 22 C -0.06 -2.17 8.43 22.25 0.19 -1.98 16 23 C 0.06 1.38 3.64 83.94 0.31 1.69 16 24 C -0.10 -1.99 4.90 28.92 0.14 -1.85 16 25 C -0.07 -1.31 1.87 -11.13 -0.02 -1.33 16 26 H 0.05 1.04 7.15 -2.39 -0.02 1.03 16 27 C 0.07 1.02 4.87 86.31 0.42 1.44 16 28 N -0.86 -13.68 8.87 -186.72 -1.66 -15.34 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 0.75 6.08 -2.39 -0.01 0.74 16 31 H 0.05 0.66 7.84 -2.39 -0.02 0.64 16 32 H 0.06 1.00 7.96 -2.39 -0.02 0.98 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.02 0.46 6.51 -2.38 -0.02 0.44 16 35 H 0.07 1.43 5.76 -2.39 -0.01 1.42 16 36 H 0.09 1.76 7.89 -2.39 -0.02 1.74 16 37 H 0.10 1.79 8.03 -2.39 -0.02 1.77 16 38 H 0.15 3.36 7.30 -2.91 -0.02 3.34 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.29 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.10 5.16 5.64 -2.91 -0.02 5.15 16 42 H 0.13 3.88 7.18 -2.91 -0.02 3.85 16 43 H 0.01 0.41 6.82 -2.39 -0.02 0.39 16 44 H 0.06 1.48 6.80 -2.39 -0.02 1.46 16 45 H 0.07 1.30 7.59 -2.39 -0.02 1.29 16 46 H 0.07 1.57 7.38 -2.39 -0.02 1.55 16 47 H 0.04 0.56 6.02 -2.39 -0.01 0.55 16 48 H 0.07 1.07 7.91 -2.39 -0.02 1.05 16 49 H 0.34 5.47 8.99 -89.69 -0.81 4.67 16 50 H 0.35 4.24 9.08 -89.69 -0.81 3.42 16 Total: -1.00 -65.75 371.81 0.05 -65.70 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.66 Total: 28.80 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 4.38 Total: -42.75 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -5.43 Total: -85.86 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.19 Total: -13.73 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.96 Total: 47.84 kcal Total: -65.75 0.05 -65.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205617947.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.053 kcal (2) G-P(sol) polarization free energy of solvation -65.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds