Wall clock time and date at job start Tue Mar 31 2020 13:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53076 * 1 3 3 H 1.10911 * 106.81728 * 2 1 4 4 C 1.52591 * 109.99066 * 244.03382 * 2 1 3 5 5 C 1.52992 * 110.07275 * 282.15190 * 4 2 1 6 6 H 1.08740 * 110.28666 * 61.63590 * 5 4 2 7 7 C 1.53237 * 109.32080 * 181.65937 * 5 4 2 8 8 N 1.46896 * 109.47387 * 297.04036 * 7 5 4 9 9 C 1.46898 * 111.00044 * 285.22413 * 8 7 5 10 10 C 1.50704 * 109.47235 * 77.82988 * 9 8 7 11 11 H 1.07999 * 120.00120 * 5.74991 * 10 9 8 12 12 C 1.37879 * 119.99943 * 185.75913 * 10 9 8 13 13 N 1.31513 * 120.00140 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99874 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46927 * 59.99837 * 14 12 10 16 16 H 1.48500 * 109.47026 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46909 * 299.99543 * 14 12 10 18 18 C 1.46889 * 111.00364 * 161.26606 * 8 7 5 19 19 C 1.50698 * 109.47700 * 190.00095 * 18 8 7 20 20 C 1.38678 * 120.41618 * 89.99623 * 19 18 8 21 21 C 1.38626 * 118.41917 * 180.02562 * 20 19 18 22 22 C 1.38233 * 119.16120 * 0.02562 * 21 20 19 23 23 N 1.31857 * 120.76274 * 359.97438 * 22 21 20 24 24 C 1.31877 * 121.72502 * 359.71021 * 23 22 21 25 25 C 1.52991 * 108.45454 * 300.78328 * 5 4 2 26 26 C 1.52565 * 110.13716 * 59.05579 * 25 5 4 27 27 H 1.10932 * 107.15115 * 193.90587 * 26 25 5 28 28 C 1.53086 * 109.98066 * 78.19252 * 26 25 5 29 29 O 1.40755 * 111.58176 * 117.70736 * 2 1 3 30 30 H 1.08995 * 109.47007 * 175.96481 * 1 2 3 31 31 H 1.08998 * 109.47338 * 295.96670 * 1 2 3 32 32 H 1.08998 * 109.46903 * 55.96474 * 1 2 3 33 33 H 1.09211 * 109.57770 * 161.84621 * 4 2 1 34 34 H 1.09222 * 109.57274 * 42.44451 * 4 2 1 35 35 H 1.09004 * 109.46921 * 57.04449 * 7 5 4 36 36 H 1.09004 * 109.46855 * 177.04026 * 7 5 4 37 37 H 1.09005 * 109.47315 * 197.82533 * 9 8 7 38 38 H 1.09001 * 109.47095 * 317.82935 * 9 8 7 39 39 H 0.96996 * 119.99955 * 180.02562 * 13 12 10 40 40 H 1.09000 * 109.47676 * 310.00606 * 18 8 7 41 41 H 1.09001 * 109.47292 * 70.00113 * 18 8 7 42 42 H 1.08000 * 120.79119 * 359.97438 * 20 19 18 43 43 H 1.08001 * 120.42032 * 179.97438 * 21 20 19 44 44 H 1.07996 * 119.61703 * 180.02562 * 22 21 20 45 45 H 1.08002 * 119.62107 * 180.30870 * 24 23 22 46 46 H 1.09236 * 109.33826 * 179.49724 * 25 5 4 47 47 H 1.09232 * 109.35381 * 298.58497 * 25 5 4 48 48 H 1.09005 * 109.46679 * 60.00174 * 28 26 25 49 49 H 1.09004 * 109.47137 * 179.97438 * 28 26 25 50 50 H 1.08993 * 109.47331 * 299.99846 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.8516 1.0617 0.0000 4 6 2.0524 -0.6278 -1.2892 5 6 1.9477 -2.1522 -1.2107 6 1 0.9088 -2.4534 -1.0989 7 6 2.5137 -2.7661 -2.4956 8 7 1.7029 -2.3357 -3.6425 9 6 0.4172 -3.0454 -3.6742 10 6 -0.5167 -2.4388 -2.6588 11 1 -0.2228 -1.5521 -2.1167 12 6 -1.7463 -3.0158 -2.4217 13 7 -2.1043 -4.0953 -3.0820 14 14 -2.9035 -2.2643 -1.1625 15 1 -3.2315 -0.8718 -1.5608 16 1 -4.1514 -3.0666 -1.0962 17 1 -2.2479 -2.2568 0.1698 18 6 2.4355 -2.5169 -4.9027 19 6 1.6829 -1.8454 -6.0224 20 6 1.9334 -0.5190 -6.3403 21 6 1.2168 0.0575 -7.3775 22 6 0.2827 -0.7033 -8.0553 23 7 0.0708 -1.9623 -7.7255 24 6 0.7381 -2.5450 -6.7486 25 6 2.7710 -2.6332 -0.0144 26 6 2.2509 -1.9970 1.2711 27 1 3.0181 -2.1671 2.0540 28 6 0.9805 -2.7151 1.7334 29 8 2.0485 -0.6086 1.1588 30 1 -0.3633 -1.0251 -0.0723 31 1 -0.3634 0.4499 0.9239 32 1 -0.3633 0.5752 -0.8516 33 1 3.0964 -0.3438 -1.4382 34 1 1.4638 -0.2677 -2.1359 35 1 3.5430 -2.4350 -2.6336 36 1 2.4886 -3.8532 -2.4205 37 1 -0.0213 -2.9587 -4.6684 38 1 0.5770 -4.0974 -3.4380 39 1 -2.9695 -4.5010 -2.9155 40 1 3.4270 -2.0728 -4.8139 41 1 2.5321 -3.5812 -5.1170 42 1 2.6686 0.0515 -5.7923 43 1 1.3856 1.0883 -7.6521 44 1 -0.2794 -0.2618 -8.8649 45 1 0.5406 -3.5797 -6.5103 46 1 2.6989 -3.7206 0.0606 47 1 3.8179 -2.3583 -0.1613 48 1 1.2039 -3.7659 1.9181 49 1 0.6165 -2.2546 2.6518 50 1 0.2167 -2.6366 0.9598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209378570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:38 Heat of formation + Delta-G solvation = -15.904602 kcal Electronic energy + Delta-G solvation = -28814.324160 eV Core-core repulsion = 25227.121949 eV Total energy + Delta-G solvation = -3587.202212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.89253 -39.47602 -36.96042 -33.79208 -33.05078 -32.71334 -31.94841 -31.03384 -29.39070 -27.56319 -26.13402 -25.81605 -24.22843 -23.24223 -22.50735 -22.11002 -21.09684 -19.89889 -17.97105 -16.71700 -16.62966 -16.01411 -15.84381 -15.44418 -15.12323 -14.92000 -14.52826 -14.41791 -14.09812 -13.60757 -13.52746 -13.30364 -13.12836 -12.68753 -12.54847 -12.36541 -12.27108 -11.95718 -11.89003 -11.79087 -11.57411 -11.39459 -11.15175 -10.97932 -10.79969 -10.65132 -10.52507 -10.43369 -10.23342 -9.82527 -9.58714 -9.42304 -9.32000 -9.11371 -9.04026 -8.92035 -8.59091 -8.36522 -7.34462 -6.04557 -4.02259 1.49129 1.68393 3.27652 3.34105 3.35884 4.02222 4.14586 4.39238 4.79975 4.90994 5.10868 5.14549 5.20894 5.24256 5.30200 5.32256 5.36316 5.41662 5.43608 5.53744 5.66635 5.71053 5.80339 5.86726 5.90315 5.92881 6.00093 6.07415 6.12590 6.14332 6.17363 6.25256 6.31364 6.34532 6.43297 6.43979 6.46485 6.61754 6.69138 6.70901 6.82604 6.91277 7.06877 7.16041 7.27282 7.37410 7.82024 8.06959 8.12146 8.15313 8.37182 8.49930 9.03396 9.58490 11.05919 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.005262 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.542262 B = 5320.067861 C = 6419.843740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.079 0.921 4 C -0.129 4.129 5 C -0.098 4.098 6 H 0.125 0.875 7 C 0.079 3.921 8 N -0.530 5.530 9 C 0.184 3.816 10 C -0.504 4.504 11 H 0.079 0.921 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.878 3.122 15 H -0.275 1.275 16 H -0.290 1.290 17 H -0.271 1.271 18 C 0.096 3.904 19 C -0.110 4.110 20 C -0.060 4.060 21 C -0.181 4.181 22 C 0.086 3.914 23 N -0.487 5.487 24 C 0.118 3.882 25 C -0.146 4.146 26 C 0.110 3.890 27 H 0.079 0.921 28 C -0.184 4.184 29 O -0.387 6.387 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.026 0.974 37 H 0.033 0.967 38 H -0.003 1.003 39 H 0.261 0.739 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.054 0.946 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.444 5.569 0.261 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.048 3.952 3 H 0.096 0.904 4 C -0.167 4.167 5 C -0.116 4.116 6 H 0.143 0.857 7 C -0.049 4.049 8 N -0.254 5.254 9 C 0.059 3.941 10 C -0.543 4.543 11 H 0.097 0.903 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.706 3.294 15 H -0.201 1.201 16 H -0.216 1.216 17 H -0.197 1.197 18 C -0.033 4.033 19 C -0.112 4.112 20 C -0.086 4.086 21 C -0.201 4.201 22 C -0.071 4.071 23 N -0.195 5.195 24 C -0.039 4.039 25 C -0.184 4.184 26 C 0.052 3.948 27 H 0.097 0.903 28 C -0.241 4.241 29 O -0.307 6.307 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.014 0.986 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.165 0.835 45 H 0.169 0.831 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.073 0.927 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.615 5.549 -0.036 11.101 hybrid contribution -0.218 -0.262 0.801 0.870 sum 9.397 5.288 0.765 10.810 Atomic orbital electron populations 1.22588 0.96618 1.03723 1.01279 1.21803 0.92928 0.95332 0.85147 0.90356 1.21980 1.00623 0.96380 0.97680 1.21482 1.03704 0.94489 0.91912 0.85701 1.21953 0.94925 0.96732 0.91280 1.62153 1.05086 1.59130 0.99034 1.19964 0.84312 0.91609 0.98253 1.21340 0.99510 1.12029 1.21398 0.90291 1.24939 0.97933 0.95048 0.96396 1.69925 1.21494 1.20396 1.41593 0.86910 0.80665 0.79505 0.82327 1.20061 1.21606 1.19669 1.20903 0.95781 0.97260 0.89327 1.20764 0.98328 0.95057 0.97084 1.21357 0.98114 0.94058 0.95090 1.22021 0.98931 1.00973 0.98149 1.22631 0.95618 0.90235 0.98590 1.67662 1.24289 1.11734 1.15841 1.22699 0.90637 1.00305 0.90267 1.22175 0.99613 1.00761 0.95871 1.21660 0.95982 0.80769 0.96356 0.90323 1.22521 0.99556 1.00031 1.02003 1.86303 1.83732 1.21408 1.39213 0.91089 0.93155 0.91627 0.93205 0.89035 0.93335 0.95599 0.94938 0.98559 0.92963 0.91191 0.94794 0.85306 0.85477 0.83533 0.83068 0.91389 0.92434 0.92072 0.92656 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.57 37.20 0.32 -2.90 16 2 C 0.11 1.69 3.43 -26.90 -0.09 1.60 16 3 H 0.08 1.14 8.28 -50.83 -0.42 0.72 16 4 C -0.13 -2.12 4.16 -26.94 -0.11 -2.23 16 5 C -0.10 -1.70 1.59 -90.51 -0.14 -1.84 16 6 H 0.13 2.63 3.33 -52.08 -0.17 2.46 16 7 C 0.08 1.37 4.40 -3.70 -0.02 1.36 16 8 N -0.53 -10.07 3.81 -237.37 -0.90 -10.97 16 9 C 0.18 4.33 4.62 -4.97 -0.02 4.31 16 10 C -0.50 -12.78 6.96 -34.44 -0.24 -13.02 16 11 H 0.08 1.92 3.53 -52.49 -0.19 1.73 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 14 Si 0.88 20.94 28.39 -169.99 -4.83 16.11 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.27 -6.20 6.80 56.52 0.38 -5.81 16 18 C 0.10 1.56 5.13 -4.98 -0.03 1.54 16 19 C -0.11 -1.84 4.97 -104.48 -0.52 -2.36 16 20 C -0.06 -0.88 9.86 -39.28 -0.39 -1.26 16 21 C -0.18 -2.46 10.11 -39.44 -0.40 -2.86 16 22 C 0.09 1.30 11.18 -17.54 -0.20 1.10 16 23 N -0.49 -8.86 10.36 -13.25 -0.14 -9.00 16 24 C 0.12 2.16 9.06 -17.55 -0.16 2.00 16 25 C -0.15 -2.18 4.77 -26.96 -0.13 -2.31 16 26 C 0.11 1.65 3.43 -26.91 -0.09 1.56 16 27 H 0.08 1.03 8.28 -50.82 -0.42 0.61 16 28 C -0.18 -2.85 9.36 37.20 0.35 -2.50 16 29 O -0.39 -6.34 9.72 -33.73 -0.33 -6.67 16 30 H 0.07 1.41 3.49 -51.93 -0.18 1.23 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.76 8.16 -51.81 -0.42 0.33 16 34 H 0.09 1.67 6.93 -51.80 -0.36 1.32 16 35 H 0.05 0.74 7.75 -51.93 -0.40 0.33 16 36 H 0.03 0.47 7.73 -51.93 -0.40 0.07 16 37 H 0.03 0.83 4.91 -51.93 -0.25 0.57 16 38 H 0.00 -0.09 7.70 -51.93 -0.40 -0.49 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.07 0.98 7.79 -51.93 -0.40 0.57 16 41 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 42 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.15 2.81 7.59 -52.49 -0.40 2.41 16 46 H 0.07 0.99 8.05 -51.80 -0.42 0.57 16 47 H 0.06 0.79 8.16 -51.80 -0.42 0.36 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.07 1.24 5.82 -51.93 -0.30 0.94 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -28.74 374.25 -9.88 -38.62 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.10 Total: 7.47 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.96 Total: -16.34 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.30 Total: -44.83 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.33 Total: -6.67 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.83 Total: 16.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.74 -9.88 -38.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209378570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.713 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds