Wall clock time and date at job start Tue Mar 31 2020 13:16:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08997 * 110.36259 * 2 1
4 4 C 1.54378 * 110.41211 * 122.34915 * 2 1 3
5 5 C 1.54443 * 104.96786 * 142.55296 * 4 2 1
6 6 C 1.54382 * 105.08148 * 0.15085 * 5 4 2
7 7 H 1.09001 * 110.40903 * 94.82634 * 6 5 4
8 8 C 1.52998 * 110.51009 * 217.21879 * 6 5 4
9 9 O 1.42901 * 109.47334 * 50.22880 * 8 6 5
10 10 N 1.48553 * 104.59171 * 336.04777 * 6 5 4
11 11 C 1.46901 * 111.00174 * 159.04153 * 10 6 5
12 12 C 1.50701 * 109.46802 * 314.45342 * 11 10 6
13 13 C 1.38276 * 119.92636 * 269.72228 * 12 11 10
14 14 C 1.38109 * 120.07582 * 179.72703 * 13 12 11
15 15 C 1.38913 * 119.92094 * 0.54546 * 14 13 12
16 16 N 1.39680 * 120.07316 * 179.74783 * 15 14 13
17 17 C 1.46497 * 119.99972 * 179.97438 * 16 15 14
18 18 C 1.46500 * 119.99674 * 359.97438 * 16 15 14
19 19 C 1.50702 * 109.47399 * 90.00160 * 18 16 15
20 20 H 1.08005 * 119.99509 * 359.97438 * 19 18 16
21 21 C 1.37870 * 120.00183 * 179.97438 * 19 18 16
22 22 N 1.31516 * 119.99987 * 359.97438 * 21 19 18
23 23 Si 1.86807 * 119.99915 * 180.02562 * 21 19 18
24 24 H 1.48497 * 109.47120 * 59.99851 * 23 21 19
25 25 H 1.48501 * 109.46839 * 179.97438 * 23 21 19
26 26 H 1.48499 * 109.46794 * 299.99685 * 23 21 19
27 27 C 1.38907 * 119.85171 * 359.73168 * 15 14 13
28 28 C 1.38101 * 119.92771 * 359.97438 * 27 15 14
29 29 H 1.09001 * 109.47002 * 180.69851 * 1 2 3
30 30 H 1.08993 * 109.46955 * 300.70289 * 1 2 3
31 31 H 1.09000 * 109.47050 * 60.70117 * 1 2 3
32 32 H 1.08996 * 110.32319 * 261.52968 * 4 2 1
33 33 H 1.09003 * 110.32066 * 23.73536 * 4 2 1
34 34 H 1.09003 * 110.39897 * 241.20367 * 5 4 2
35 35 H 1.09003 * 110.22759 * 119.01112 * 5 4 2
36 36 H 1.09004 * 109.46818 * 170.22923 * 8 6 5
37 37 H 1.09000 * 109.47427 * 290.22904 * 8 6 5
38 38 H 0.96696 * 114.00278 * 179.97438 * 9 8 6
39 39 H 1.09001 * 109.47187 * 74.45247 * 11 10 6
40 40 H 1.08994 * 109.47632 * 194.45640 * 11 10 6
41 41 H 1.08000 * 119.96396 * 359.97438 * 13 12 11
42 42 H 1.08004 * 120.03912 * 180.27996 * 14 13 12
43 43 H 1.08998 * 109.47254 * 90.00076 * 17 16 15
44 44 H 1.08994 * 109.47098 * 210.00213 * 17 16 15
45 45 H 1.08998 * 109.47381 * 330.00226 * 17 16 15
46 46 H 1.09005 * 109.46773 * 209.99492 * 18 16 15
47 47 H 1.09003 * 109.47518 * 329.99324 * 18 16 15
48 48 H 0.97005 * 119.99827 * 180.02562 * 22 21 19
49 49 H 1.07999 * 120.03585 * 179.97438 * 27 15 14
50 50 H 1.07994 * 119.96734 * 180.02562 * 28 27 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9093 1.0219 0.0000
4 6 2.0685 -0.7742 1.2223
5 6 3.3178 -1.5196 0.7037
6 6 3.4292 -1.1289 -0.7857
7 1 4.1074 -0.2843 -0.9075
8 6 3.9074 -2.3202 -1.6181
9 8 3.1079 -3.4651 -1.3144
10 7 2.0482 -0.7450 -1.1762
11 6 2.0569 0.1040 -2.3750
12 6 3.1170 1.1654 -2.2312
13 6 2.8002 2.3837 -1.6591
14 6 3.7706 3.3566 -1.5206
15 6 5.0635 3.1142 -1.9671
16 7 6.0462 4.0978 -1.8334
17 6 7.4092 3.8402 -2.3044
18 6 5.7137 5.3870 -1.2222
19 6 5.9435 5.3120 0.2653
20 1 6.3010 4.3954 0.7108
21 6 5.6973 6.4133 1.0573
22 7 5.2624 7.5295 0.5146
23 14 5.9828 6.3204 2.9011
24 1 7.4084 5.9997 3.1656
25 1 5.6468 7.6276 3.5204
26 1 5.1207 5.2603 3.4826
27 6 5.3769 1.8912 -2.5466
28 6 4.4032 0.9206 -2.6765
29 1 -0.3633 -1.0276 0.0125
30 1 -0.3633 0.5247 0.8836
31 1 -0.3633 0.5029 -0.8962
32 1 2.3416 -0.0819 2.0186
33 1 1.3235 -1.4862 1.5776
34 1 3.1861 -2.5970 0.8037
35 1 4.2042 -1.1935 1.2479
36 1 3.8150 -2.0833 -2.6781
37 1 4.9503 -2.5327 -1.3828
38 1 3.3552 -4.2595 -1.8072
39 1 2.2714 -0.5073 -3.2516
40 1 1.0822 0.5776 -2.4920
41 1 1.7936 2.5734 -1.3165
42 1 3.5236 4.3063 -1.0695
43 1 7.4987 4.1503 -3.3455
44 1 8.1165 4.4032 -1.6955
45 1 7.6268 2.7752 -2.2227
46 1 6.3466 6.1653 -1.6488
47 1 4.6673 5.6224 -1.4169
48 1 5.0895 8.3045 1.0719
49 1 6.3810 1.6997 -2.8952
50 1 4.6463 -0.0305 -3.1265
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001231815993.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:16:47
Heat of formation + Delta-G solvation = -11.163249 kcal
Electronic energy + Delta-G solvation = -27966.991142 eV
Core-core repulsion = 24379.994531 eV
Total energy + Delta-G solvation = -3586.996611 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.15880 -38.48476 -36.44305 -35.66008 -32.95339 -32.27428 -31.77331 -30.46051
-29.04598 -27.89272 -27.45781 -25.65344 -24.17595 -23.59090 -22.48656 -21.75972
-20.03656 -19.91451 -19.32362 -17.50506 -16.67785 -16.47875 -15.95921 -15.35327
-15.20844 -14.87704 -14.60599 -14.28383 -14.04375 -13.82865 -13.78526 -13.38411
-13.03834 -13.01155 -12.81418 -12.54651 -12.21441 -12.03541 -11.81434 -11.64160
-11.59202 -11.43361 -11.30008 -11.07899 -11.03446 -10.90620 -10.73435 -10.63918
-10.49648 -10.33311 -10.29754 -9.96530 -9.90459 -9.80622 -8.87355 -8.54931
-8.34717 -8.20624 -6.52985 -6.06993 -4.22382 1.99388 2.13160 3.24492
3.29288 3.32264 4.07870 4.09174 4.29755 4.36449 4.45729 4.73364
4.89472 5.14391 5.16959 5.20097 5.28895 5.31382 5.40174 5.42370
5.49374 5.55619 5.57826 5.69137 5.74302 5.76585 5.82270 5.92997
5.98241 6.01252 6.03263 6.06575 6.13466 6.19503 6.23327 6.28075
6.34673 6.41510 6.43823 6.53982 6.85152 6.93369 7.01023 7.14661
7.20175 7.25347 7.30382 7.50665 7.66319 7.75805 8.09895 8.19742
8.41137 8.85999 9.44684 10.91108
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.013485 B = 0.003865 C = 0.003488
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2075.842342 B = 7242.541206 C = 8026.390171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.049 3.951
3 H 0.065 0.935
4 C -0.117 4.117
5 C -0.117 4.117
6 C 0.050 3.950
7 H 0.087 0.913
8 C 0.094 3.906
9 O -0.557 6.557
10 N -0.484 5.484
11 C 0.092 3.908
12 C -0.208 4.208
13 C -0.063 4.063
14 C -0.186 4.186
15 C 0.243 3.757
16 N -0.614 5.614
17 C 0.098 3.902
18 C 0.249 3.751
19 C -0.533 4.533
20 H 0.058 0.942
21 C 0.063 3.937
22 N -0.895 5.895
23 Si 0.896 3.104
24 H -0.277 1.277
25 H -0.286 1.286
26 H -0.275 1.275
27 C -0.222 4.222
28 C -0.064 4.064
29 H 0.059 0.941
30 H 0.055 0.945
31 H 0.052 0.948
32 H 0.064 0.936
33 H 0.067 0.933
34 H 0.079 0.921
35 H 0.060 0.940
36 H 0.043 0.957
37 H 0.043 0.957
38 H 0.368 0.632
39 H 0.072 0.928
40 H 0.074 0.926
41 H 0.110 0.890
42 H 0.132 0.868
43 H 0.036 0.964
44 H 0.067 0.933
45 H 0.054 0.946
46 H 0.030 0.970
47 H 0.036 0.964
48 H 0.265 0.735
49 H 0.113 0.887
50 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.913 -17.200 -5.164 18.380
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.059 4.059
3 H 0.083 0.917
4 C -0.155 4.155
5 C -0.155 4.155
6 C -0.058 4.058
7 H 0.105 0.895
8 C 0.016 3.984
9 O -0.361 6.361
10 N -0.207 5.207
11 C -0.036 4.036
12 C -0.212 4.212
13 C -0.083 4.083
14 C -0.209 4.209
15 C 0.135 3.865
16 N -0.320 5.320
17 C -0.046 4.046
18 C 0.130 3.870
19 C -0.572 4.572
20 H 0.076 0.924
21 C -0.139 4.139
22 N -0.533 5.533
23 Si 0.723 3.277
24 H -0.202 1.202
25 H -0.211 1.211
26 H -0.201 1.201
27 C -0.245 4.245
28 C -0.084 4.084
29 H 0.078 0.922
30 H 0.074 0.926
31 H 0.071 0.929
32 H 0.082 0.918
33 H 0.086 0.914
34 H 0.098 0.902
35 H 0.079 0.921
36 H 0.061 0.939
37 H 0.061 0.939
38 H 0.213 0.787
39 H 0.091 0.909
40 H 0.092 0.908
41 H 0.128 0.872
42 H 0.149 0.851
43 H 0.054 0.946
44 H 0.086 0.914
45 H 0.073 0.927
46 H 0.048 0.952
47 H 0.053 0.947
48 H 0.075 0.925
49 H 0.131 0.869
50 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -4.427 -16.847 -4.824 18.075
hybrid contribution 1.131 0.583 0.805 1.506
sum -3.295 -16.264 -4.019 17.074
Atomic orbital electron populations
1.21687 0.94304 1.01964 1.01135 1.22722 0.95619 0.97209 0.90390
0.91670 1.22326 0.97453 0.98746 0.97015 1.22243 0.97565 1.01444
0.94223 1.22939 0.92006 0.96212 0.94628 0.89513 1.22007 0.92525
0.86103 0.97773 1.86588 1.60522 1.20480 1.68516 1.65712 1.16992
1.35203 1.02783 1.21138 0.96958 0.91724 0.93736 1.19958 0.95948
0.96882 1.08366 1.20696 0.98150 0.92445 0.96976 1.20899 0.92029
1.01351 1.06578 1.17955 0.89076 0.88147 0.91318 1.47123 1.06907
1.15391 1.62529 1.21476 0.84561 1.00513 0.98052 1.19287 0.96997
0.78373 0.92383 1.21521 1.45176 0.98123 0.92377 0.92360 1.24951
0.94912 0.95153 0.98932 1.69920 1.45125 1.02287 1.35989 0.86589
0.78785 0.77313 0.84981 1.20217 1.21114 1.20092 1.20559 0.99695
0.94145 1.10083 1.20532 0.92517 0.97410 0.97896 0.92159 0.92616
0.92911 0.91760 0.91398 0.90245 0.92125 0.93856 0.93920 0.78657
0.90915 0.90763 0.87209 0.85061 0.94564 0.91399 0.92716 0.95182
0.94658 0.92538 0.86870 0.87588
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.54 9.34 37.16 0.35 -1.20 16
2 C 0.05 0.65 2.74 -66.07 -0.18 0.47 16
3 H 0.07 0.98 5.25 -51.93 -0.27 0.71 16
4 C -0.12 -1.50 6.57 -25.25 -0.17 -1.66 16
5 C -0.12 -1.50 6.45 -25.25 -0.16 -1.67 16
6 C 0.05 0.66 2.18 -66.07 -0.14 0.51 16
7 H 0.09 1.28 4.76 -51.93 -0.25 1.03 16
8 C 0.09 1.03 6.73 37.16 0.25 1.28 16
9 O -0.56 -6.08 12.34 -35.23 -0.43 -6.51 16
10 N -0.48 -6.42 4.98 -215.78 -1.08 -7.49 16
11 C 0.09 1.20 5.49 -4.97 -0.03 1.18 16
12 C -0.21 -3.10 3.84 -104.59 -0.40 -3.50 16
13 C -0.06 -1.06 8.03 -39.61 -0.32 -1.38 16
14 C -0.19 -3.68 9.21 -39.38 -0.36 -4.05 16
15 C 0.24 4.78 6.55 -83.78 -0.55 4.23 16
16 N -0.61 -12.90 2.99 -181.00 -0.54 -13.44 16
17 C 0.10 1.69 10.19 59.85 0.61 2.30 16
18 C 0.25 6.17 4.91 -5.19 -0.03 6.14 16
19 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 16
20 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16
21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
22 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16
23 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16
24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
27 C -0.22 -3.70 9.21 -39.38 -0.36 -4.07 16
28 C -0.06 -0.95 7.48 -39.61 -0.30 -1.25 16
29 H 0.06 0.70 8.12 -51.93 -0.42 0.27 16
30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.05 0.59 7.31 -51.93 -0.38 0.21 16
32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16
34 H 0.08 1.03 6.88 -51.93 -0.36 0.67 16
35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.04 0.45 7.11 -51.93 -0.37 0.08 16
37 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16
38 H 0.37 2.32 9.12 45.56 0.42 2.74 16
39 H 0.07 0.89 7.67 -51.93 -0.40 0.50 16
40 H 0.07 0.94 7.13 -51.93 -0.37 0.57 16
41 H 0.11 1.69 7.52 -52.49 -0.39 1.29 16
42 H 0.13 2.90 6.14 -52.48 -0.32 2.58 16
43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
44 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16
45 H 0.05 0.83 6.20 -51.93 -0.32 0.50 16
46 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16
47 H 0.04 0.93 6.20 -51.93 -0.32 0.60 16
48 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16
49 H 0.11 1.71 6.14 -52.49 -0.32 1.38 16
50 H 0.11 1.33 7.36 -52.49 -0.39 0.94 16
LS Contribution 381.95 15.07 5.76 5.76
Total: -1.00 -29.51 381.95 -10.17 -39.67
By element:
Atomic # 1 Polarization: 13.67 SS G_CDS: -7.37 Total: 6.30 kcal
Atomic # 6 Polarization: -13.52 SS G_CDS: -2.21 Total: -15.73 kcal
Atomic # 7 Polarization: -44.72 SS G_CDS: -0.88 Total: -45.60 kcal
Atomic # 8 Polarization: -6.08 SS G_CDS: -0.43 Total: -6.51 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -29.51 -10.17 -39.67 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001231815993.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.511 kcal
(2) G-P(sol) polarization free energy of solvation -29.508 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.998 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.163 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds