Wall clock time and date at job start Tue Mar 31 2020 13:16:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08997 * 110.36259 * 2 1
4 4 C 1.54378 * 110.41211 * 122.34915 * 2 1 3
5 5 C 1.54443 * 104.96786 * 142.55296 * 4 2 1
6 6 C 1.54382 * 105.08148 * 0.15085 * 5 4 2
7 7 H 1.09001 * 110.40903 * 94.82634 * 6 5 4
8 8 C 1.52998 * 110.51009 * 217.21879 * 6 5 4
9 9 O 1.42901 * 109.47334 * 50.22880 * 8 6 5
10 10 N 1.48553 * 104.59171 * 336.04777 * 6 5 4
11 11 C 1.46901 * 111.00174 * 159.04153 * 10 6 5
12 12 C 1.50701 * 109.46802 * 314.45342 * 11 10 6
13 13 C 1.38276 * 119.92636 * 269.72228 * 12 11 10
14 14 C 1.38109 * 120.07582 * 179.72703 * 13 12 11
15 15 C 1.38913 * 119.92094 * 0.54546 * 14 13 12
16 16 N 1.39680 * 120.07316 * 179.74783 * 15 14 13
17 17 C 1.46497 * 119.99972 * 179.97438 * 16 15 14
18 18 C 1.46500 * 119.99674 * 359.97438 * 16 15 14
19 19 C 1.50702 * 109.47399 * 90.00160 * 18 16 15
20 20 H 1.08005 * 119.99509 * 359.97438 * 19 18 16
21 21 C 1.37870 * 120.00183 * 179.97438 * 19 18 16
22 22 N 1.31516 * 119.99987 * 359.97438 * 21 19 18
23 23 Si 1.86807 * 119.99915 * 180.02562 * 21 19 18
24 24 H 1.48497 * 109.47120 * 59.99851 * 23 21 19
25 25 H 1.48501 * 109.46839 * 179.97438 * 23 21 19
26 26 H 1.48499 * 109.46794 * 299.99685 * 23 21 19
27 27 C 1.38907 * 119.85171 * 359.73168 * 15 14 13
28 28 C 1.38101 * 119.92771 * 359.97438 * 27 15 14
29 29 H 1.09001 * 109.47002 * 180.69851 * 1 2 3
30 30 H 1.08993 * 109.46955 * 300.70289 * 1 2 3
31 31 H 1.09000 * 109.47050 * 60.70117 * 1 2 3
32 32 H 1.08996 * 110.32319 * 261.52968 * 4 2 1
33 33 H 1.09003 * 110.32066 * 23.73536 * 4 2 1
34 34 H 1.09003 * 110.39897 * 241.20367 * 5 4 2
35 35 H 1.09003 * 110.22759 * 119.01112 * 5 4 2
36 36 H 1.09004 * 109.46818 * 170.22923 * 8 6 5
37 37 H 1.09000 * 109.47427 * 290.22904 * 8 6 5
38 38 H 0.96696 * 114.00278 * 179.97438 * 9 8 6
39 39 H 1.09001 * 109.47187 * 74.45247 * 11 10 6
40 40 H 1.08994 * 109.47632 * 194.45640 * 11 10 6
41 41 H 1.08000 * 119.96396 * 359.97438 * 13 12 11
42 42 H 1.08004 * 120.03912 * 180.27996 * 14 13 12
43 43 H 1.08998 * 109.47254 * 90.00076 * 17 16 15
44 44 H 1.08994 * 109.47098 * 210.00213 * 17 16 15
45 45 H 1.08998 * 109.47381 * 330.00226 * 17 16 15
46 46 H 1.09005 * 109.46773 * 209.99492 * 18 16 15
47 47 H 1.09003 * 109.47518 * 329.99324 * 18 16 15
48 48 H 0.97005 * 119.99827 * 180.02562 * 22 21 19
49 49 H 1.07999 * 120.03585 * 179.97438 * 27 15 14
50 50 H 1.07994 * 119.96734 * 180.02562 * 28 27 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9093 1.0219 0.0000
4 6 2.0685 -0.7742 1.2223
5 6 3.3178 -1.5196 0.7037
6 6 3.4292 -1.1289 -0.7857
7 1 4.1074 -0.2843 -0.9075
8 6 3.9074 -2.3202 -1.6181
9 8 3.1079 -3.4651 -1.3144
10 7 2.0482 -0.7450 -1.1762
11 6 2.0569 0.1040 -2.3750
12 6 3.1170 1.1654 -2.2312
13 6 2.8002 2.3837 -1.6591
14 6 3.7706 3.3566 -1.5206
15 6 5.0635 3.1142 -1.9671
16 7 6.0462 4.0978 -1.8334
17 6 7.4092 3.8402 -2.3044
18 6 5.7137 5.3870 -1.2222
19 6 5.9435 5.3120 0.2653
20 1 6.3010 4.3954 0.7108
21 6 5.6973 6.4133 1.0573
22 7 5.2624 7.5295 0.5146
23 14 5.9828 6.3204 2.9011
24 1 7.4084 5.9997 3.1656
25 1 5.6468 7.6276 3.5204
26 1 5.1207 5.2603 3.4826
27 6 5.3769 1.8912 -2.5466
28 6 4.4032 0.9206 -2.6765
29 1 -0.3633 -1.0276 0.0125
30 1 -0.3633 0.5247 0.8836
31 1 -0.3633 0.5029 -0.8962
32 1 2.3416 -0.0819 2.0186
33 1 1.3235 -1.4862 1.5776
34 1 3.1861 -2.5970 0.8037
35 1 4.2042 -1.1935 1.2479
36 1 3.8150 -2.0833 -2.6781
37 1 4.9503 -2.5327 -1.3828
38 1 3.3552 -4.2595 -1.8072
39 1 2.2714 -0.5073 -3.2516
40 1 1.0822 0.5776 -2.4920
41 1 1.7936 2.5734 -1.3165
42 1 3.5236 4.3063 -1.0695
43 1 7.4987 4.1503 -3.3455
44 1 8.1165 4.4032 -1.6955
45 1 7.6268 2.7752 -2.2227
46 1 6.3466 6.1653 -1.6488
47 1 4.6673 5.6224 -1.4169
48 1 5.0895 8.3045 1.0719
49 1 6.3810 1.6997 -2.8952
50 1 4.6463 -0.0305 -3.1265
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001231815993.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:16:46
Heat of formation + Delta-G solvation = -29.912483 kcal
Electronic energy + Delta-G solvation = -27967.804170 eV
Core-core repulsion = 24379.994531 eV
Total energy + Delta-G solvation = -3587.809639 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 318.205 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.31272 -39.77573 -37.44030 -36.96150 -34.86149 -33.56608 -32.77909 -31.82214
-30.38605 -29.61962 -28.40824 -27.06171 -25.72129 -24.52927 -24.00387 -23.17038
-21.39667 -20.95494 -20.46272 -18.66317 -18.33222 -18.07169 -16.98551 -16.92339
-16.39841 -16.13052 -15.96954 -15.57314 -15.35589 -15.08899 -14.92863 -14.66825
-14.40427 -14.20269 -14.07281 -13.95625 -13.49758 -13.20825 -13.13287 -13.08723
-12.92064 -12.74100 -12.66922 -12.65398 -12.55752 -12.27831 -12.17715 -11.93032
-11.77840 -11.64306 -11.46996 -11.37394 -11.34976 -10.69380 -10.66699 -10.40325
-9.68632 -9.29454 -8.38835 -7.83800 -6.40254 0.63410 0.77956 1.34834
1.36334 1.44665 2.31418 2.59721 2.97506 3.03793 3.19181 3.52266
3.73050 3.92227 4.02858 4.07403 4.16353 4.24314 4.29944 4.38519
4.42325 4.48692 4.56652 4.60352 4.63409 4.68321 4.72710 4.77170
4.81337 4.85884 4.88553 4.96713 4.98146 5.01138 5.06103 5.11501
5.16504 5.16630 5.24825 5.27288 5.39690 5.43161 5.54639 5.60608
5.66146 5.81677 6.04065 6.08684 6.14027 6.22417 6.46146 6.79214
6.89648 7.10793 7.31684 8.80518
Molecular weight = 318.20amu
Principal moments of inertia in cm(-1)
A = 0.013485 B = 0.003865 C = 0.003488
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2075.842342 B = 7242.541206 C = 8026.390171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.045 3.955
3 H 0.044 0.956
4 C -0.119 4.119
5 C -0.116 4.116
6 C 0.046 3.954
7 H 0.069 0.931
8 C 0.098 3.902
9 O -0.575 6.575
10 N -0.481 5.481
11 C 0.095 3.905
12 C -0.191 4.191
13 C -0.064 4.064
14 C -0.215 4.215
15 C 0.215 3.785
16 N -0.631 5.631
17 C 0.098 3.902
18 C 0.267 3.733
19 C -0.542 4.542
20 H 0.048 0.952
21 C 0.015 3.985
22 N -0.926 5.926
23 Si 0.959 3.041
24 H -0.268 1.268
25 H -0.278 1.278
26 H -0.274 1.274
27 C -0.215 4.215
28 C -0.054 4.054
29 H 0.063 0.937
30 H 0.061 0.939
31 H 0.054 0.946
32 H 0.058 0.942
33 H 0.076 0.924
34 H 0.081 0.919
35 H 0.057 0.943
36 H 0.054 0.946
37 H 0.056 0.944
38 H 0.389 0.611
39 H 0.091 0.909
40 H 0.079 0.921
41 H 0.117 0.883
42 H 0.093 0.907
43 H 0.053 0.947
44 H 0.055 0.945
45 H 0.079 0.921
46 H 0.009 0.991
47 H 0.009 0.991
48 H 0.268 0.732
49 H 0.135 0.865
50 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.819 -20.300 -5.633 21.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.064 4.064
3 H 0.062 0.938
4 C -0.157 4.157
5 C -0.154 4.154
6 C -0.062 4.062
7 H 0.087 0.913
8 C 0.020 3.980
9 O -0.381 6.381
10 N -0.203 5.203
11 C -0.033 4.033
12 C -0.195 4.195
13 C -0.083 4.083
14 C -0.238 4.238
15 C 0.110 3.890
16 N -0.338 5.338
17 C -0.045 4.045
18 C 0.146 3.854
19 C -0.581 4.581
20 H 0.067 0.933
21 C -0.185 4.185
22 N -0.566 5.566
23 Si 0.784 3.216
24 H -0.193 1.193
25 H -0.203 1.203
26 H -0.200 1.200
27 C -0.238 4.238
28 C -0.073 4.073
29 H 0.082 0.918
30 H 0.080 0.920
31 H 0.074 0.926
32 H 0.077 0.923
33 H 0.094 0.906
34 H 0.099 0.901
35 H 0.075 0.925
36 H 0.072 0.928
37 H 0.074 0.926
38 H 0.237 0.763
39 H 0.110 0.890
40 H 0.097 0.903
41 H 0.135 0.865
42 H 0.111 0.889
43 H 0.071 0.929
44 H 0.074 0.926
45 H 0.098 0.902
46 H 0.027 0.973
47 H 0.027 0.973
48 H 0.076 0.924
49 H 0.153 0.847
50 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -4.331 -19.998 -5.318 21.142
hybrid contribution 1.022 1.423 0.913 1.975
sum -3.309 -18.575 -4.405 19.375
Atomic orbital electron populations
1.21643 0.93027 1.02261 1.01621 1.22755 0.96695 0.96080 0.90842
0.93846 1.22344 0.97794 0.98789 0.96754 1.22236 0.97359 1.01440
0.94404 1.22969 0.91352 0.96742 0.95140 0.91317 1.21938 0.93008
0.85376 0.97683 1.86525 1.60871 1.21407 1.69344 1.65783 1.17199
1.34709 1.02642 1.21214 0.96421 0.91248 0.94386 1.20233 0.96859
0.96229 1.06193 1.20795 0.97863 0.92681 0.96949 1.20758 0.93560
1.00886 1.08622 1.18218 0.88683 0.89203 0.92928 1.46974 1.08683
1.14477 1.63689 1.21607 0.82399 1.01931 0.98567 1.18755 0.94884
0.80172 0.91609 1.21729 1.44924 0.97735 0.93705 0.93328 1.25754
0.94580 0.94772 1.03379 1.70028 1.45997 1.02925 1.37608 0.85595
0.78952 0.77473 0.79609 1.19279 1.20306 1.19969 1.20806 1.01209
0.92896 1.08857 1.20906 0.91709 0.98127 0.96553 0.91839 0.92014
0.92646 0.92325 0.90565 0.90064 0.92458 0.92816 0.92588 0.76271
0.89036 0.90298 0.86520 0.88909 0.92879 0.92566 0.90221 0.97297
0.97266 0.92354 0.84734 0.84051
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.76 9.34 71.98 0.67 -2.09 16
2 C 0.04 1.13 2.74 45.06 0.12 1.25 16
3 H 0.04 1.29 5.25 -2.39 -0.01 1.28 16
4 C -0.12 -2.89 6.57 31.55 0.21 -2.69 16
5 C -0.12 -2.80 6.45 31.55 0.20 -2.60 16
6 C 0.05 1.09 2.18 45.06 0.10 1.19 16
7 H 0.07 1.87 4.76 -2.39 -0.01 1.86 16
8 C 0.10 1.77 6.73 71.98 0.48 2.26 16
9 O -0.57 -10.51 12.34 -148.98 -1.84 -12.35 16
10 N -0.48 -11.54 4.98 -836.60 -4.17 -15.71 16
11 C 0.10 2.20 5.49 85.56 0.47 2.67 16
12 C -0.19 -5.35 3.84 -19.84 -0.08 -5.42 16
13 C -0.06 -2.15 8.03 22.25 0.18 -1.97 16
14 C -0.22 -8.97 9.21 22.40 0.21 -8.76 16
15 C 0.21 8.61 6.55 38.21 0.25 8.86 16
16 N -0.63 -27.31 2.99 -726.57 -2.17 -29.49 16
17 C 0.10 3.33 10.19 127.77 1.30 4.63 16
18 C 0.27 14.05 4.91 85.63 0.42 14.47 16
19 C -0.54 -30.46 9.39 25.60 0.24 -30.22 16
20 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16
21 C 0.01 0.82 5.46 84.65 0.46 1.28 16
22 N -0.93 -54.44 13.29 21.44 0.28 -54.16 16
23 Si 0.96 44.11 29.54 68.60 2.03 46.14 16
24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
25 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16
26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16
27 C -0.21 -6.77 9.21 22.40 0.21 -6.57 16
28 C -0.05 -1.43 7.48 22.25 0.17 -1.27 16
29 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16
30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.05 1.15 7.31 -2.39 -0.02 1.13 16
32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.08 1.71 7.84 -2.39 -0.02 1.69 16
34 H 0.08 1.93 6.88 -2.39 -0.02 1.91 16
35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
36 H 0.05 0.86 7.11 -2.38 -0.02 0.84 16
37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
38 H 0.39 3.48 9.12 -74.06 -0.68 2.80 16
39 H 0.09 1.84 7.67 -2.39 -0.02 1.83 16
40 H 0.08 1.79 7.13 -2.39 -0.02 1.77 16
41 H 0.12 3.67 7.52 -2.91 -0.02 3.65 16
42 H 0.09 4.51 6.14 -2.91 -0.02 4.50 16
43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
44 H 0.06 2.00 8.07 -2.39 -0.02 1.99 16
45 H 0.08 2.26 6.20 -2.39 -0.01 2.25 16
46 H 0.01 0.50 8.07 -2.38 -0.02 0.48 16
47 H 0.01 0.53 6.20 -2.39 -0.01 0.52 16
48 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16
49 H 0.13 3.62 6.14 -2.91 -0.02 3.60 16
50 H 0.14 2.82 7.36 -2.91 -0.02 2.80 16
Total: -1.00 -65.66 381.95 0.01 -65.65
By element:
Atomic # 1 Polarization: 24.63 SS G_CDS: 0.26 Total: 24.89 kcal
Atomic # 6 Polarization: -30.59 SS G_CDS: 5.61 Total: -24.97 kcal
Atomic # 7 Polarization: -93.30 SS G_CDS: -6.06 Total: -99.35 kcal
Atomic # 8 Polarization: -10.51 SS G_CDS: -1.84 Total: -12.35 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal
Total: -65.66 0.01 -65.65 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001231815993.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.738 kcal
(2) G-P(sol) polarization free energy of solvation -65.656 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.918 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.651 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.912 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds