Wall clock time and date at job start Tue Mar 31 2020 13:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52614 * 2 1 4 4 C 1.53116 * 109.52634 * 239.80286 * 2 1 3 5 5 C 1.53033 * 109.27916 * 182.44228 * 4 2 1 6 6 N 1.46842 * 109.52591 * 59.18109 * 5 4 2 7 7 C 1.46897 * 111.00540 * 174.15945 * 6 5 4 8 8 C 1.50704 * 109.47085 * 294.21242 * 7 6 5 9 9 C 1.38282 * 119.92309 * 89.99646 * 8 7 6 10 10 C 1.38112 * 120.06934 * 179.97438 * 9 8 7 11 11 C 1.38910 * 119.92832 * 0.02562 * 10 9 8 12 12 N 1.39671 * 120.07868 * 179.97438 * 11 10 9 13 13 C 1.46512 * 119.99592 * 359.97438 * 12 11 10 14 14 C 1.46491 * 120.00446 * 179.97438 * 12 11 10 15 15 C 1.50702 * 109.46957 * 89.99835 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.38915 * 119.84762 * 0.24945 * 11 10 9 24 24 C 1.38105 * 119.92552 * 359.49353 * 23 11 10 25 25 C 1.46843 * 111.19854 * 298.26078 * 6 5 4 26 26 C 1.53033 * 109.52654 * 61.73537 * 25 6 5 27 27 H 1.09002 * 109.50070 * 60.76603 * 26 25 6 28 28 O 1.42902 * 109.50541 * 180.87952 * 26 25 6 29 29 H 1.08994 * 109.47422 * 299.87928 * 1 2 3 30 30 H 1.09004 * 109.46754 * 59.87653 * 1 2 3 31 31 H 1.09002 * 109.47098 * 179.87797 * 1 2 3 32 32 H 1.09001 * 109.50614 * 302.38520 * 4 2 1 33 33 H 1.09003 * 109.50019 * 62.46132 * 4 2 1 34 34 H 1.08996 * 109.46447 * 299.16545 * 5 4 2 35 35 H 1.09001 * 109.46465 * 179.19545 * 5 4 2 36 36 H 1.09001 * 109.47813 * 174.21223 * 7 6 5 37 37 H 1.08998 * 109.47120 * 54.20625 * 7 6 5 38 38 H 1.07997 * 119.97062 * 0.02562 * 9 8 7 39 39 H 1.07996 * 120.03511 * 179.97438 * 10 9 8 40 40 H 1.08995 * 109.46885 * 270.00007 * 13 12 11 41 41 H 1.09002 * 109.46695 * 30.00156 * 13 12 11 42 42 H 1.09003 * 109.46868 * 149.99784 * 13 12 11 43 43 H 1.09004 * 109.47166 * 330.00101 * 14 12 11 44 44 H 1.08994 * 109.47507 * 209.99808 * 14 12 11 45 45 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 46 46 H 1.07996 * 120.03582 * 179.73010 * 23 11 10 47 47 H 1.07995 * 119.96200 * 180.25763 * 24 23 11 48 48 H 1.09003 * 109.46486 * 181.75676 * 25 6 5 49 49 H 1.09007 * 109.46242 * 301.73164 * 25 6 5 50 50 H 0.96703 * 114.00321 * 300.00710 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0418 -0.7258 -1.2473 5 6 3.5708 -0.7759 -1.2110 6 7 4.0102 -1.4789 0.0011 7 6 5.4670 -1.6678 0.0013 8 6 5.8530 -2.5986 -1.1193 9 6 6.1514 -2.0871 -2.3690 10 6 6.5060 -2.9373 -3.3980 11 6 6.5623 -4.3075 -3.1767 12 7 6.9201 -5.1702 -4.2153 13 6 7.2360 -4.6302 -5.5401 14 6 6.9795 -6.6149 -3.9800 15 6 5.6339 -7.2272 -4.2726 16 1 4.8164 -6.6027 -4.6014 17 6 5.4483 -8.5856 -4.1265 18 7 6.4439 -9.3461 -3.7265 19 14 3.7826 -9.3457 -4.4967 20 1 3.7264 -9.7431 -5.9264 21 1 3.5842 -10.5437 -3.6418 22 1 2.7128 -8.3547 -4.2160 23 6 6.2564 -4.8183 -1.9216 24 6 5.9077 -3.9621 -0.8956 25 6 3.5707 -0.7745 1.2122 26 6 2.0417 -0.7242 1.2483 27 1 1.6446 -1.7392 1.2686 28 8 1.6148 -0.0208 2.4167 29 1 -0.3634 0.5119 0.8910 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3633 -1.0277 -0.0022 32 1 1.6448 -1.7408 -1.2663 33 1 1.7156 -0.1907 -2.1392 34 1 3.9675 0.2393 -1.2059 35 1 3.9379 -1.3047 -2.0906 36 1 5.7776 -2.0975 0.9537 37 1 5.9582 -0.7052 -0.1405 38 1 6.1078 -1.0217 -2.5403 39 1 6.7385 -2.5373 -4.3739 40 1 6.3264 -4.5809 -6.1386 41 1 7.6558 -3.6299 -5.4340 42 1 7.9608 -5.2781 -6.0331 43 1 7.2458 -6.8029 -2.9398 44 1 7.7305 -7.0589 -4.6333 45 1 6.3131 -10.3018 -3.6234 46 1 6.2950 -5.8834 -1.7474 47 1 5.6738 -4.3583 0.0814 48 1 3.9377 -1.3021 2.0926 49 1 3.9672 0.2409 1.2059 50 1 1.9065 -0.4228 3.2464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231816021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:29 Heat of formation + Delta-G solvation = -22.971104 kcal Electronic energy + Delta-G solvation = -26973.104186 eV Core-core repulsion = 23385.595548 eV Total energy + Delta-G solvation = -3587.508638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.84333 -38.83047 -36.70078 -35.50202 -34.14508 -32.69629 -30.54048 -30.43617 -29.87743 -27.88184 -27.69612 -25.50759 -24.17619 -23.18966 -22.43901 -21.77899 -21.20988 -19.89080 -19.57992 -17.47260 -16.63195 -16.45323 -15.90627 -15.55827 -15.29272 -14.85651 -14.65549 -14.42798 -14.15089 -13.72165 -13.65552 -13.50577 -13.25520 -13.02602 -12.91923 -12.63072 -12.57051 -12.21373 -12.10571 -11.80667 -11.73236 -11.54726 -11.45259 -11.25544 -11.03924 -10.93593 -10.77594 -10.69378 -10.61570 -10.36898 -10.24868 -10.04606 -9.90686 -9.74249 -8.84680 -8.50642 -8.32349 -8.24163 -6.47100 -6.02091 -4.17294 2.10103 2.19516 3.26415 3.33316 3.38270 3.72224 4.13010 4.17739 4.41424 4.53731 4.61329 4.64219 4.81324 5.04767 5.12895 5.21335 5.23348 5.27173 5.27842 5.38894 5.46922 5.54387 5.58193 5.61128 5.68730 5.72854 5.73992 5.79439 5.83617 5.96049 6.00890 6.06398 6.10439 6.11320 6.26192 6.28209 6.37500 6.42539 6.62717 6.89360 6.99264 7.02978 7.08498 7.20988 7.26580 7.36739 7.45018 7.59644 7.81061 8.15353 8.25905 8.47676 8.91596 9.49514 10.95536 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.003043 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.422532 B = 9197.929160 C =10138.309699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.112 4.112 5 C 0.051 3.949 6 N -0.528 5.528 7 C 0.113 3.887 8 C -0.168 4.168 9 C -0.068 4.068 10 C -0.222 4.222 11 C 0.242 3.758 12 N -0.616 5.616 13 C 0.100 3.900 14 C 0.249 3.751 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.896 5.896 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.188 4.188 24 C -0.051 4.051 25 C 0.025 3.975 26 C 0.111 3.889 27 H 0.065 0.935 28 O -0.567 6.567 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.036 0.964 44 H 0.030 0.970 45 H 0.264 0.736 46 H 0.131 0.869 47 H 0.111 0.889 48 H 0.074 0.926 49 H 0.036 0.964 50 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.547 18.251 7.871 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.077 4.077 6 N -0.254 5.254 7 C -0.014 4.014 8 C -0.171 4.171 9 C -0.087 4.087 10 C -0.245 4.245 11 C 0.135 3.865 12 N -0.322 5.322 13 C -0.044 4.044 14 C 0.129 3.871 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.210 4.210 24 C -0.070 4.070 25 C -0.103 4.103 26 C 0.052 3.948 27 H 0.083 0.917 28 O -0.372 6.372 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.149 0.851 47 H 0.129 0.871 48 H 0.092 0.908 49 H 0.054 0.946 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.926 17.829 7.286 19.880 hybrid contribution -0.238 -0.216 0.085 0.332 sum -5.164 17.613 7.371 19.780 Atomic orbital electron populations 1.21747 0.94615 1.01903 1.01704 1.21154 0.96346 0.99519 0.93226 0.91153 1.21650 0.95122 1.01520 0.96652 1.22199 0.95225 0.96131 0.94135 1.61897 1.13213 1.49011 1.01246 1.20807 0.86026 0.96763 0.97780 1.19099 1.09456 0.93879 0.94630 1.20502 0.98007 0.97861 0.92375 1.20517 1.12351 0.91959 0.99679 1.17939 0.90801 0.89305 0.88429 1.47098 1.70442 1.07246 1.07364 1.21459 0.99667 0.98103 0.85151 1.19298 0.96962 0.73236 0.97569 1.21576 0.97110 0.92559 1.45677 0.92271 1.24960 0.97033 0.97051 0.95030 1.69931 1.31200 1.05606 1.46731 0.86525 0.84145 0.78797 0.78201 1.20645 1.21069 1.19755 1.20894 1.07365 1.00716 0.92037 1.20616 0.96243 0.92171 0.97997 1.22779 0.96361 0.97135 0.94041 1.21834 0.92222 0.95367 0.85342 0.91657 1.86503 1.78557 1.56048 1.16085 0.92116 0.92858 0.92709 0.90623 0.90980 0.95366 0.89213 0.90730 0.94962 0.87780 0.86966 0.94107 0.92848 0.92066 0.94634 0.95236 0.92657 0.85075 0.87096 0.90773 0.94566 0.77674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.08 37.16 0.34 -1.00 16 2 C -0.08 -0.85 2.51 -90.50 -0.23 -1.08 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.18 5.38 -26.65 -0.14 -1.33 16 5 C 0.05 0.59 5.15 -3.84 -0.02 0.57 16 6 N -0.53 -6.40 4.65 -236.12 -1.10 -7.50 16 7 C 0.11 1.40 5.12 -4.98 -0.03 1.38 16 8 C -0.17 -2.54 4.89 -104.59 -0.51 -3.05 16 9 C -0.07 -1.03 7.86 -39.61 -0.31 -1.34 16 10 C -0.22 -3.79 9.21 -39.38 -0.36 -4.15 16 11 C 0.24 4.85 6.55 -83.79 -0.55 4.30 16 12 N -0.62 -13.11 2.99 -181.00 -0.54 -13.65 16 13 C 0.10 1.75 10.23 59.85 0.61 2.36 16 14 C 0.25 6.23 4.95 -5.20 -0.03 6.20 16 15 C -0.53 -14.50 9.39 -34.44 -0.32 -14.82 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.90 -25.64 13.29 55.43 0.74 -24.91 16 19 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.19 -3.77 9.20 -39.38 -0.36 -4.13 16 24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 25 C 0.03 0.26 5.08 -3.84 -0.02 0.24 16 26 C 0.11 1.12 3.04 -26.65 -0.08 1.04 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 O -0.57 -5.33 12.76 -35.23 -0.45 -5.78 16 29 H 0.06 0.59 7.76 -51.93 -0.40 0.19 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 1.19 5.75 -51.93 -0.30 0.89 16 36 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 37 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 38 H 0.10 1.34 7.95 -52.49 -0.42 0.92 16 39 H 0.11 1.73 6.14 -52.49 -0.32 1.41 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.79 6.20 -51.93 -0.32 0.46 16 42 H 0.06 1.02 7.89 -51.93 -0.41 0.61 16 43 H 0.04 0.94 6.21 -51.93 -0.32 0.62 16 44 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.13 2.92 6.15 -52.49 -0.32 2.60 16 47 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 48 H 0.07 0.67 8.02 -51.93 -0.42 0.26 16 49 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.38 2.05 9.08 45.56 0.41 2.46 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -29.74 389.84 -10.83 -40.57 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.83 Total: 3.51 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -2.49 Total: -14.46 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.90 Total: -46.06 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.45 Total: -5.78 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.74 -10.83 -40.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231816021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.598 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds