Wall clock time and date at job start Tue Mar 31 2020 13:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52614 * 2 1 4 4 C 1.53116 * 109.52634 * 239.80286 * 2 1 3 5 5 C 1.53033 * 109.27916 * 182.44228 * 4 2 1 6 6 N 1.46842 * 109.52591 * 59.18109 * 5 4 2 7 7 C 1.46897 * 111.00540 * 174.15945 * 6 5 4 8 8 C 1.50704 * 109.47085 * 294.21242 * 7 6 5 9 9 C 1.38282 * 119.92309 * 89.99646 * 8 7 6 10 10 C 1.38112 * 120.06934 * 179.97438 * 9 8 7 11 11 C 1.38910 * 119.92832 * 0.02562 * 10 9 8 12 12 N 1.39671 * 120.07868 * 179.97438 * 11 10 9 13 13 C 1.46512 * 119.99592 * 359.97438 * 12 11 10 14 14 C 1.46491 * 120.00446 * 179.97438 * 12 11 10 15 15 C 1.50702 * 109.46957 * 89.99835 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.38915 * 119.84762 * 0.24945 * 11 10 9 24 24 C 1.38105 * 119.92552 * 359.49353 * 23 11 10 25 25 C 1.46843 * 111.19854 * 298.26078 * 6 5 4 26 26 C 1.53033 * 109.52654 * 61.73537 * 25 6 5 27 27 H 1.09002 * 109.50070 * 60.76603 * 26 25 6 28 28 O 1.42902 * 109.50541 * 180.87952 * 26 25 6 29 29 H 1.08994 * 109.47422 * 299.87928 * 1 2 3 30 30 H 1.09004 * 109.46754 * 59.87653 * 1 2 3 31 31 H 1.09002 * 109.47098 * 179.87797 * 1 2 3 32 32 H 1.09001 * 109.50614 * 302.38520 * 4 2 1 33 33 H 1.09003 * 109.50019 * 62.46132 * 4 2 1 34 34 H 1.08996 * 109.46447 * 299.16545 * 5 4 2 35 35 H 1.09001 * 109.46465 * 179.19545 * 5 4 2 36 36 H 1.09001 * 109.47813 * 174.21223 * 7 6 5 37 37 H 1.08998 * 109.47120 * 54.20625 * 7 6 5 38 38 H 1.07997 * 119.97062 * 0.02562 * 9 8 7 39 39 H 1.07996 * 120.03511 * 179.97438 * 10 9 8 40 40 H 1.08995 * 109.46885 * 270.00007 * 13 12 11 41 41 H 1.09002 * 109.46695 * 30.00156 * 13 12 11 42 42 H 1.09003 * 109.46868 * 149.99784 * 13 12 11 43 43 H 1.09004 * 109.47166 * 330.00101 * 14 12 11 44 44 H 1.08994 * 109.47507 * 209.99808 * 14 12 11 45 45 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 46 46 H 1.07996 * 120.03582 * 179.73010 * 23 11 10 47 47 H 1.07995 * 119.96200 * 180.25763 * 24 23 11 48 48 H 1.09003 * 109.46486 * 181.75676 * 25 6 5 49 49 H 1.09007 * 109.46242 * 301.73164 * 25 6 5 50 50 H 0.96703 * 114.00321 * 300.00710 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0418 -0.7258 -1.2473 5 6 3.5708 -0.7759 -1.2110 6 7 4.0102 -1.4789 0.0011 7 6 5.4670 -1.6678 0.0013 8 6 5.8530 -2.5986 -1.1193 9 6 6.1514 -2.0871 -2.3690 10 6 6.5060 -2.9373 -3.3980 11 6 6.5623 -4.3075 -3.1767 12 7 6.9201 -5.1702 -4.2153 13 6 7.2360 -4.6302 -5.5401 14 6 6.9795 -6.6149 -3.9800 15 6 5.6339 -7.2272 -4.2726 16 1 4.8164 -6.6027 -4.6014 17 6 5.4483 -8.5856 -4.1265 18 7 6.4439 -9.3461 -3.7265 19 14 3.7826 -9.3457 -4.4967 20 1 3.7264 -9.7431 -5.9264 21 1 3.5842 -10.5437 -3.6418 22 1 2.7128 -8.3547 -4.2160 23 6 6.2564 -4.8183 -1.9216 24 6 5.9077 -3.9621 -0.8956 25 6 3.5707 -0.7745 1.2122 26 6 2.0417 -0.7242 1.2483 27 1 1.6446 -1.7392 1.2686 28 8 1.6148 -0.0208 2.4167 29 1 -0.3634 0.5119 0.8910 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3633 -1.0277 -0.0022 32 1 1.6448 -1.7408 -1.2663 33 1 1.7156 -0.1907 -2.1392 34 1 3.9675 0.2393 -1.2059 35 1 3.9379 -1.3047 -2.0906 36 1 5.7776 -2.0975 0.9537 37 1 5.9582 -0.7052 -0.1405 38 1 6.1078 -1.0217 -2.5403 39 1 6.7385 -2.5373 -4.3739 40 1 6.3264 -4.5809 -6.1386 41 1 7.6558 -3.6299 -5.4340 42 1 7.9608 -5.2781 -6.0331 43 1 7.2458 -6.8029 -2.9398 44 1 7.7305 -7.0589 -4.6333 45 1 6.3131 -10.3018 -3.6234 46 1 6.2950 -5.8834 -1.7474 47 1 5.6738 -4.3583 0.0814 48 1 3.9377 -1.3021 2.0926 49 1 3.9672 0.2409 1.2059 50 1 1.9065 -0.4228 3.2464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231816021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:29 Heat of formation + Delta-G solvation = -41.381579 kcal Electronic energy + Delta-G solvation = -26973.902524 eV Core-core repulsion = 23385.595548 eV Total energy + Delta-G solvation = -3588.306976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 318.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85109 -40.05408 -37.81863 -36.69458 -35.14487 -34.64022 -31.91802 -31.68006 -30.73508 -29.65061 -28.77609 -26.86805 -25.65333 -24.09973 -23.82493 -23.03814 -22.36308 -20.98773 -20.71062 -18.64671 -18.30111 -17.96478 -16.91073 -16.77204 -16.57280 -16.15333 -15.72563 -15.62746 -15.40885 -15.29921 -14.74624 -14.55129 -14.45044 -14.33109 -14.05375 -13.98795 -13.53072 -13.40350 -13.19789 -13.16198 -13.04342 -12.93376 -12.67773 -12.59198 -12.53297 -12.48180 -12.23688 -11.92276 -11.79238 -11.76158 -11.45242 -11.38732 -11.14253 -10.83851 -10.63943 -10.38740 -9.63938 -9.20700 -8.35976 -7.79546 -6.37184 0.72176 0.84143 1.36314 1.37687 1.48772 2.34356 2.63862 2.80941 3.06113 3.23992 3.48937 3.77331 3.81605 3.98398 4.07192 4.11667 4.23771 4.29662 4.37782 4.40680 4.44023 4.49975 4.57159 4.62341 4.69019 4.72460 4.77836 4.82407 4.87453 4.89421 4.93293 4.94322 5.01737 5.02314 5.12648 5.15269 5.19249 5.22470 5.33817 5.35184 5.46058 5.59903 5.67168 5.70603 5.92998 6.07658 6.13802 6.19326 6.24223 6.50561 6.83117 6.89622 6.94630 7.34612 8.83202 Molecular weight = 318.20amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.003043 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.422532 B = 9197.929160 C =10138.309699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.070 0.930 4 C -0.108 4.108 5 C 0.051 3.949 6 N -0.543 5.543 7 C 0.116 3.884 8 C -0.153 4.153 9 C -0.060 4.060 10 C -0.217 4.217 11 C 0.213 3.787 12 N -0.632 5.632 13 C 0.100 3.900 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.047 0.953 17 C 0.013 3.987 18 N -0.926 5.926 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.273 1.273 23 C -0.217 4.217 24 C -0.055 4.055 25 C 0.030 3.970 26 C 0.115 3.885 27 H 0.055 0.945 28 O -0.576 6.576 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.038 0.962 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.011 0.989 44 H 0.010 0.990 45 H 0.267 0.733 46 H 0.094 0.906 47 H 0.122 0.878 48 H 0.086 0.914 49 H 0.039 0.961 50 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 20.891 8.299 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.088 0.912 4 C -0.146 4.146 5 C -0.076 4.076 6 N -0.269 5.269 7 C -0.011 4.011 8 C -0.156 4.156 9 C -0.079 4.079 10 C -0.239 4.239 11 C 0.109 3.891 12 N -0.340 5.340 13 C -0.043 4.043 14 C 0.145 3.855 15 C -0.580 4.580 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.566 5.566 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.198 1.198 23 C -0.239 4.239 24 C -0.074 4.074 25 C -0.098 4.098 26 C 0.056 3.944 27 H 0.073 0.927 28 O -0.383 6.383 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.057 0.943 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.140 0.860 48 H 0.104 0.896 49 H 0.057 0.943 50 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.975 20.505 7.735 22.715 hybrid contribution 0.075 -0.918 0.067 0.923 sum -5.900 19.587 7.802 21.894 Atomic orbital electron populations 1.21710 0.94229 1.01718 1.01975 1.21140 0.96684 0.99304 0.93045 0.91164 1.21611 0.94548 1.00849 0.97565 1.22179 0.95764 0.96360 0.93331 1.61829 1.12866 1.50020 1.02167 1.20790 0.86553 0.96762 0.96952 1.19439 1.07095 0.93343 0.95735 1.20876 0.96140 0.99299 0.91589 1.20766 1.11389 0.90570 1.01201 1.18206 0.92384 0.90519 0.88025 1.46959 1.72132 1.05787 1.09159 1.21590 0.99746 0.99564 0.83415 1.18783 0.95310 0.75978 0.95435 1.21772 0.97705 0.92920 1.45580 0.93444 1.25767 1.00594 0.97508 0.94764 1.70034 1.33119 1.05952 1.47520 0.85520 0.79617 0.77871 0.78478 1.19545 1.20326 1.19787 1.20781 1.10026 0.99422 0.93704 1.20767 0.95927 0.93006 0.97691 1.22771 0.96296 0.97183 0.93517 1.21721 0.92149 0.94821 0.85717 0.92729 1.86472 1.78734 1.56301 1.16808 0.92498 0.91924 0.93116 0.92216 0.89780 0.94207 0.90791 0.89711 0.93275 0.84397 0.84984 0.94307 0.89713 0.92053 0.97118 0.97213 0.92380 0.88810 0.86035 0.89573 0.94260 0.75721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.08 71.98 0.65 -1.72 16 2 C -0.08 -1.51 2.51 -10.72 -0.03 -1.53 16 3 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.11 -2.08 5.38 30.64 0.16 -1.91 16 5 C 0.05 1.06 5.15 86.33 0.44 1.51 16 6 N -0.54 -11.72 4.65 -900.96 -4.19 -15.91 16 7 C 0.12 2.51 5.12 85.56 0.44 2.95 16 8 C -0.15 -4.32 4.89 -19.84 -0.10 -4.42 16 9 C -0.06 -1.65 7.86 22.25 0.17 -1.47 16 10 C -0.22 -7.02 9.21 22.40 0.21 -6.82 16 11 C 0.21 8.69 6.55 38.22 0.25 8.94 16 12 N -0.63 -27.81 2.99 -726.55 -2.17 -29.99 16 13 C 0.10 3.47 10.23 127.76 1.31 4.78 16 14 C 0.27 14.12 4.95 85.64 0.42 14.54 16 15 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 16 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 17 C 0.01 0.73 5.46 84.66 0.46 1.19 16 18 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 19 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 C -0.22 -9.10 9.20 22.40 0.21 -8.89 16 24 C -0.05 -1.86 9.69 22.25 0.22 -1.65 16 25 C 0.03 0.53 5.08 86.33 0.44 0.97 16 26 C 0.12 2.07 3.04 30.65 0.09 2.17 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 O -0.58 -9.49 12.76 -148.98 -1.90 -11.39 16 29 H 0.06 1.01 7.76 -2.39 -0.02 1.00 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.92 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 1.76 5.75 -2.39 -0.01 1.75 16 36 H 0.08 1.69 7.93 -2.39 -0.02 1.67 16 37 H 0.05 0.93 8.07 -2.39 -0.02 0.92 16 38 H 0.14 2.90 7.95 -2.91 -0.02 2.88 16 39 H 0.13 3.70 6.14 -2.91 -0.02 3.68 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 2.36 6.20 -2.39 -0.01 2.34 16 42 H 0.06 2.08 7.89 -2.39 -0.02 2.06 16 43 H 0.01 0.62 6.21 -2.38 -0.01 0.60 16 44 H 0.01 0.55 7.89 -2.39 -0.02 0.53 16 45 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 46 H 0.09 4.57 6.15 -2.91 -0.02 4.55 16 47 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 48 H 0.09 1.30 8.02 -2.39 -0.02 1.28 16 49 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 50 H 0.39 3.32 9.08 -74.06 -0.67 2.65 16 Total: -1.00 -65.94 389.84 -0.11 -66.05 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.24 Total: 21.01 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 5.60 Total: -21.90 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -6.07 Total: -100.33 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.90 Total: -11.39 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -65.94 -0.11 -66.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231816021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.669 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds